Wall clock time and date at job start Sat Apr 11 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47599 * 2 1 4 4 O 1.21282 * 119.99880 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99939 * 179.97438 * 3 2 1 6 6 C 1.47021 * 125.65050 * 359.97438 * 5 3 2 7 7 C 1.54318 * 107.27154 * 178.98098 * 6 5 3 8 8 C 1.55162 * 102.94445 * 337.80649 * 7 6 5 9 9 H 1.08990 * 111.00164 * 277.38985 * 8 7 6 10 10 C 1.50704 * 111.00301 * 153.57532 * 8 7 6 11 11 O 1.21285 * 119.99544 * 241.45292 * 10 8 7 12 12 N 1.34771 * 119.99968 * 61.45514 * 10 8 7 13 13 C 1.46503 * 119.99646 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46877 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.68018 * 59.76615 * 14 13 12 16 16 C 1.53296 * 109.68076 * 180.32407 * 14 13 12 17 17 O 1.42967 * 109.22159 * 172.02484 * 16 14 13 18 18 C 1.42955 * 114.16480 * 297.41319 * 17 16 14 19 19 C 1.53301 * 109.22023 * 62.58784 * 18 17 16 20 20 N 1.47150 * 108.38360 * 307.69348 * 19 18 17 21 21 C 1.36942 * 120.98258 * 230.51697 * 20 19 18 22 22 H 1.07997 * 120.00048 * 149.51195 * 21 20 19 23 23 C 1.38804 * 119.99636 * 329.51120 * 21 20 19 24 24 N 1.31626 * 119.99748 * 163.16333 * 23 21 20 25 25 Si 1.86797 * 120.00509 * 343.16569 * 23 21 20 26 26 H 1.48497 * 109.47305 * 88.95795 * 25 23 21 27 27 H 1.48501 * 109.46979 * 208.95668 * 25 23 21 28 28 H 1.48495 * 109.46828 * 328.95626 * 25 23 21 29 29 C 1.47421 * 125.64596 * 180.02562 * 5 3 2 30 30 H 1.09006 * 109.46840 * 300.00331 * 1 2 3 31 31 H 1.08995 * 109.46746 * 59.99194 * 1 2 3 32 32 H 1.08993 * 109.47715 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46840 * 239.99669 * 2 1 3 34 34 H 1.09004 * 109.46958 * 120.00666 * 2 1 3 35 35 H 1.08997 * 109.88142 * 59.56429 * 6 5 3 36 36 H 1.09001 * 110.01045 * 298.47224 * 6 5 3 37 37 H 1.08999 * 110.72370 * 219.43970 * 7 6 5 38 38 H 1.09006 * 110.72170 * 96.16930 * 7 6 5 39 39 H 0.96994 * 120.00020 * 0.02562 * 12 10 8 40 40 H 1.08997 * 109.47177 * 59.99919 * 13 12 10 41 41 H 1.09003 * 109.46850 * 299.99911 * 13 12 10 42 42 H 1.09006 * 109.51352 * 291.94490 * 16 14 13 43 43 H 1.08999 * 109.51342 * 52.09736 * 16 14 13 44 44 H 1.08999 * 109.51822 * 302.66170 * 18 17 16 45 45 H 1.08998 * 109.51150 * 182.50172 * 18 17 16 46 46 H 1.08996 * 109.68086 * 187.97065 * 19 18 17 47 47 H 1.08997 * 109.68373 * 67.41727 * 19 18 17 48 48 H 0.97000 * 120.00172 * 179.97438 * 24 23 21 49 49 H 1.09008 * 110.36328 * 85.24873 * 29 5 3 50 50 H 1.09003 * 110.37157 * 322.93030 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2444 2.3426 0.0005 5 7 3.3575 1.6669 0.0005 6 6 4.4182 0.6488 0.0017 7 6 5.7690 1.3945 -0.0243 8 6 5.3898 2.7805 -0.6097 9 1 5.3426 2.7452 -1.6980 10 6 6.3527 3.8438 -0.1478 11 8 5.9518 4.7801 0.5106 12 7 7.6591 3.7542 -0.4665 13 6 8.5950 4.7882 -0.0179 14 6 10.0033 4.4499 -0.5111 15 1 10.0089 4.4003 -1.6000 16 6 10.9883 5.5249 -0.0374 17 8 12.3217 5.1080 -0.3407 18 6 12.7262 3.9098 0.3258 19 6 11.8303 2.7520 -0.1293 20 7 10.4260 3.1552 0.0462 21 6 9.5386 2.3493 0.7082 22 1 8.7173 2.7865 1.2565 23 6 9.6948 0.9705 0.6744 24 7 9.0701 0.2157 1.5534 25 14 10.7914 0.1860 -0.6184 26 1 12.1821 0.1039 -0.1042 27 1 10.2957 -1.1798 -0.9253 28 1 10.7681 1.0102 -1.8534 29 6 3.9834 3.0017 0.0011 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 4.3265 0.0170 -0.8818 36 1 4.3487 0.0388 0.9023 37 1 6.4796 0.8829 -0.6736 38 1 6.1716 1.4985 0.9833 39 1 7.9795 3.0055 -0.9934 40 1 8.5921 4.8332 1.0712 41 1 8.2909 5.7536 -0.4223 42 1 10.7754 6.4641 -0.5480 43 1 10.8860 5.6635 1.0389 44 1 12.6303 4.0424 1.4035 45 1 13.7636 3.6869 0.0765 46 1 12.0368 1.8686 0.4749 47 1 12.0204 2.5317 -1.1797 48 1 9.1789 -0.7479 1.5296 49 1 4.0675 3.3807 1.0197 50 1 3.4065 3.6915 -0.6148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051196422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:57 Heat of formation + Delta-G solvation = -106.066573 kcal Electronic energy + Delta-G solvation = -31291.571939 eV Core-core repulsion = 27125.895856 eV Total energy + Delta-G solvation = -4165.676083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52827 -40.68030 -40.00851 -38.19286 -36.99278 -35.30377 -33.94960 -33.57769 -32.91709 -32.14528 -30.16595 -29.20235 -27.44402 -25.94616 -25.15372 -24.00753 -23.49483 -22.99453 -21.54041 -20.81163 -20.14157 -18.93264 -18.30751 -18.08237 -17.68881 -17.35225 -16.86967 -16.63266 -16.48897 -16.41394 -16.02535 -15.87003 -15.51552 -15.39179 -15.05971 -14.54490 -14.44534 -14.37107 -14.26598 -13.90240 -13.73604 -13.51221 -13.43008 -13.13202 -13.11309 -12.81278 -12.78120 -12.57646 -12.34763 -12.28536 -12.20729 -12.06562 -12.00018 -11.83305 -11.48888 -11.33375 -11.05383 -10.96390 -10.76333 -10.45028 -9.86487 -9.72712 -8.79439 -8.01297 -5.41419 1.37751 1.51059 1.56461 1.57710 1.66291 1.87542 2.40390 2.50542 2.90378 3.06869 3.28057 3.31120 3.51455 3.76915 3.86399 3.96550 4.09803 4.18195 4.21033 4.22534 4.24670 4.27268 4.29672 4.31029 4.42378 4.49967 4.56432 4.63208 4.70562 4.72145 4.74733 4.78270 4.86703 4.92931 4.95274 4.97170 5.05073 5.07227 5.11731 5.23587 5.29316 5.36616 5.59983 5.94484 6.21164 6.29425 6.46712 6.69528 6.92098 7.09174 7.33617 7.67147 8.08488 9.14564 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016565 B = 0.003223 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.859669 B = 8685.017693 C =10037.115443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.133 4.133 3 C 0.517 3.483 4 O -0.592 6.592 5 N -0.619 5.619 6 C 0.106 3.894 7 C -0.105 4.105 8 C -0.111 4.111 9 H 0.135 0.865 10 C 0.521 3.479 11 O -0.594 6.594 12 N -0.688 5.688 13 C 0.140 3.860 14 C 0.130 3.870 15 H 0.058 0.942 16 C 0.055 3.945 17 O -0.391 6.391 18 C 0.052 3.948 19 C 0.086 3.914 20 N -0.619 5.619 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.005 4.005 24 N -0.936 5.936 25 Si 0.928 3.072 26 H -0.289 1.289 27 H -0.314 1.314 28 H -0.264 1.264 29 C 0.131 3.869 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.413 0.587 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.113 0.887 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.260 0.740 49 H 0.052 0.948 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.010 -1.137 -7.479 8.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.172 4.172 3 C 0.309 3.691 4 O -0.473 6.473 5 N -0.352 5.352 6 C -0.016 4.016 7 C -0.143 4.143 8 C -0.133 4.133 9 H 0.153 0.847 10 C 0.308 3.692 11 O -0.476 6.476 12 N -0.337 5.337 13 C 0.016 3.984 14 C 0.024 3.976 15 H 0.075 0.925 16 C -0.023 4.023 17 O -0.309 6.309 18 C -0.026 4.026 19 C -0.039 4.039 20 N -0.346 5.346 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.202 4.202 24 N -0.581 5.581 25 Si 0.759 3.241 26 H -0.217 1.217 27 H -0.243 1.243 28 H -0.189 1.189 29 C 0.008 3.992 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.250 0.750 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.140 0.860 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.131 0.869 46 H 0.082 0.918 47 H 0.055 0.945 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.675 -0.077 -7.093 8.496 hybrid contribution 0.759 -1.034 -0.043 1.283 sum -3.917 -1.110 -7.136 8.215 Atomic orbital electron populations 1.21541 0.93033 1.02815 1.01897 1.21706 0.98333 0.90662 1.06516 1.21343 0.79786 0.93361 0.74625 1.90672 1.55433 1.48599 1.52554 1.48698 1.05750 1.08039 1.72754 1.22215 0.84608 0.90661 1.04102 1.22458 0.96905 0.92763 1.02221 1.22369 0.92933 0.94662 1.03305 0.84733 1.20457 0.83327 0.86154 0.79268 1.90648 1.78811 1.36291 1.41841 1.45875 1.06403 1.27134 1.54318 1.21112 0.87626 0.90874 0.98783 1.21594 0.92418 0.86578 0.96986 0.92480 1.23015 0.81816 0.97255 1.00216 1.87842 1.30359 1.42453 1.70292 1.23037 0.98829 0.84596 0.96158 1.22090 0.85236 0.97663 0.98887 1.44568 1.05053 1.19372 1.65619 1.18790 1.07903 0.87134 1.23153 0.91276 1.25631 0.99035 0.96515 0.99037 1.69909 1.47214 1.04944 1.36058 0.86273 0.78762 0.76787 0.82318 1.21656 1.24280 1.18886 1.21754 0.91544 0.85391 1.00543 0.93743 0.93241 0.89243 0.86181 0.87030 0.87738 0.89947 0.88417 0.92293 0.74996 0.93891 0.89945 0.86018 0.93469 0.93447 0.86885 0.91804 0.94548 0.93101 0.92959 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.20 71.98 0.66 -1.70 16 2 C -0.13 -2.30 5.61 29.85 0.17 -2.13 16 3 C 0.52 14.28 7.85 87.66 0.69 14.97 16 4 O -0.59 -21.48 16.24 -3.03 -0.05 -21.53 16 5 N -0.62 -16.66 3.33 -811.79 -2.70 -19.36 16 6 C 0.11 2.35 6.49 86.73 0.56 2.92 16 7 C -0.11 -2.98 6.37 31.78 0.20 -2.78 16 8 C -0.11 -3.15 3.43 -10.14 -0.03 -3.18 16 9 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 10 C 0.52 18.31 7.16 87.66 0.63 18.94 16 11 O -0.59 -25.00 15.80 -3.05 -0.05 -25.05 16 12 N -0.69 -23.25 3.72 -463.05 -1.72 -24.97 16 13 C 0.14 4.66 4.44 86.38 0.38 5.04 16 14 C 0.13 4.22 3.21 44.97 0.14 4.36 16 15 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 16 C 0.06 1.58 6.29 72.08 0.45 2.04 16 17 O -0.39 -12.20 10.74 -148.98 -1.60 -13.80 16 18 C 0.05 1.61 6.98 72.08 0.50 2.11 16 19 C 0.09 3.20 4.38 86.36 0.38 3.58 16 20 N -0.62 -24.43 2.78 -673.73 -1.87 -26.31 16 21 C -0.24 -11.08 7.54 84.03 0.63 -10.45 16 22 H 0.07 3.58 5.98 -2.91 -0.02 3.57 16 23 C -0.01 -0.26 5.28 84.86 0.45 0.19 16 24 N -0.94 -49.22 13.97 21.65 0.30 -48.91 16 25 Si 0.93 39.62 24.28 68.60 1.67 41.29 16 26 H -0.29 -12.27 6.54 99.48 0.65 -11.62 16 27 H -0.31 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.26 -10.81 6.65 99.48 0.66 -10.15 16 29 C 0.13 4.11 5.97 86.86 0.52 4.63 16 30 H 0.04 0.92 8.10 -2.38 -0.02 0.90 16 31 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.06 2.17 8.03 -2.38 -0.02 2.15 16 39 H 0.41 13.87 7.33 -92.71 -0.68 13.19 16 40 H 0.04 1.67 7.56 -2.39 -0.02 1.65 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 46 H 0.06 2.61 4.89 -2.39 -0.01 2.60 16 47 H 0.04 1.35 6.82 -2.39 -0.02 1.33 16 48 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 49 H 0.05 1.93 7.51 -2.38 -0.02 1.91 16 50 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 Total: -1.00 -66.83 387.88 0.47 -66.35 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.16 Total: 33.76 kcal Atomic # 6 Polarization: 32.20 SS G_CDS: 6.34 Total: 38.54 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -5.99 Total: -119.56 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -1.70 Total: -60.38 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.67 Total: 41.29 kcal Total: -66.83 0.47 -66.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051196422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.714 kcal (2) G-P(sol) polarization free energy of solvation -66.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds