Wall clock time and date at job start Sat Apr 11 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47038 * 2 1 4 4 O 1.21280 * 120.00217 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99542 * 179.97438 * 3 2 1 6 6 C 1.46920 * 120.63432 * 3.67997 * 5 3 2 7 7 C 1.53197 * 108.77330 * 126.39114 * 6 5 3 8 8 C 1.53034 * 109.31391 * 54.63437 * 7 6 5 9 9 C 1.53040 * 109.54055 * 298.63469 * 8 7 6 10 10 C 1.46930 * 120.62295 * 183.67641 * 5 3 2 11 11 H 1.09003 * 109.58203 * 113.82719 * 10 5 3 12 12 C 1.50693 * 109.70878 * 353.46886 * 10 5 3 13 13 O 1.21283 * 120.00145 * 294.67999 * 12 10 5 14 14 N 1.34784 * 119.99875 * 114.67451 * 12 10 5 15 15 C 1.46500 * 119.99632 * 180.02562 * 14 12 10 16 16 H 1.08998 * 110.89073 * 31.11910 * 15 14 12 17 17 C 1.54910 * 111.00252 * 267.19681 * 15 14 12 18 18 N 1.47422 * 104.83223 * 204.91956 * 17 15 14 19 19 C 1.36940 * 125.65237 * 204.10823 * 18 17 15 20 20 H 1.08003 * 119.99790 * 5.04426 * 19 18 17 21 21 C 1.38811 * 120.00396 * 185.04254 * 19 18 17 22 22 N 1.31622 * 120.00010 * 354.92398 * 21 19 18 23 23 Si 1.86802 * 119.99828 * 174.92830 * 21 19 18 24 24 H 1.48507 * 109.47114 * 95.00068 * 23 21 19 25 25 H 1.48503 * 109.46783 * 214.99645 * 23 21 19 26 26 H 1.48491 * 109.47211 * 334.99990 * 23 21 19 27 27 C 1.47020 * 108.70334 * 24.12664 * 18 17 15 28 28 C 1.54317 * 107.27216 * 358.94338 * 27 18 17 29 29 H 1.08998 * 110.72164 * 219.44299 * 28 27 18 30 30 O 1.42900 * 110.87583 * 96.23831 * 28 27 18 31 31 H 1.09003 * 109.47041 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47486 * 299.99312 * 1 2 3 33 33 H 1.09005 * 109.47484 * 59.99997 * 1 2 3 34 34 H 1.09004 * 109.47031 * 240.00462 * 2 1 3 35 35 H 1.09001 * 109.47301 * 120.00729 * 2 1 3 36 36 H 1.09001 * 109.58532 * 6.60445 * 6 5 3 37 37 H 1.08998 * 109.70346 * 246.24585 * 6 5 3 38 38 H 1.09006 * 109.49683 * 294.67757 * 7 6 5 39 39 H 1.09004 * 109.49465 * 174.59268 * 7 6 5 40 40 H 1.09005 * 109.45758 * 178.61545 * 8 7 6 41 41 H 1.08997 * 109.44801 * 58.65183 * 8 7 6 42 42 H 1.08999 * 109.49588 * 301.41696 * 9 8 7 43 43 H 1.08991 * 109.52477 * 181.33681 * 9 8 7 44 44 H 0.96995 * 120.00130 * 0.02562 * 14 12 10 45 45 H 1.09001 * 110.36877 * 323.75501 * 17 15 14 46 46 H 1.09000 * 110.36857 * 86.08540 * 17 15 14 47 47 H 0.96996 * 119.99725 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.88699 * 239.51970 * 27 18 17 49 49 H 1.09001 * 110.01223 * 118.43502 * 27 18 17 50 50 H 0.96709 * 113.99726 * 66.38886 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3239 0.5634 -0.0800 7 6 5.2831 0.8321 -1.2440 8 6 5.9190 2.2129 -1.0674 9 6 4.8271 3.2851 -1.0840 10 6 3.8627 3.0443 0.0816 11 1 4.3885 3.1855 1.0259 12 6 2.7123 4.0137 -0.0060 13 8 2.0604 4.0906 -1.0258 14 7 2.4078 4.7952 1.0491 15 6 1.2890 5.7372 0.9641 16 1 0.5090 5.3558 0.3051 17 6 1.7734 7.1342 0.5020 18 7 0.7687 8.0754 1.0294 19 6 0.4954 9.3178 0.5225 20 1 0.9788 9.6492 -0.3846 21 6 -0.4030 10.1512 1.1745 22 7 -1.0671 9.7117 2.2224 23 14 -0.6696 11.8966 0.5645 24 1 -1.8440 11.9295 -0.3439 25 1 -0.9143 12.7936 1.7224 26 1 0.5372 12.3541 -0.1699 27 6 0.1091 7.4595 2.1900 28 6 0.7210 6.0546 2.3726 29 1 -0.0468 5.3326 2.6505 30 8 1.7669 6.0774 3.3461 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.7947 -0.3739 -0.2515 37 1 4.8876 0.4999 0.8507 38 1 4.7318 0.8028 -2.1839 39 1 6.0633 0.0709 -1.2555 40 1 6.6205 2.3963 -1.8813 41 1 6.4493 2.2492 -0.1159 42 1 4.2801 3.2328 -2.0254 43 1 5.2824 4.2701 -0.9821 44 1 2.9293 4.7339 1.8646 45 1 2.7553 7.3532 0.9215 46 1 1.8051 7.1839 -0.5864 47 1 -1.6952 10.2939 2.6778 48 1 -0.9621 7.3763 2.0067 49 1 0.2867 8.0600 3.0822 50 1 1.4644 6.2716 4.2439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083484066.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:28 Heat of formation + Delta-G solvation = -84.380856 kcal Electronic energy + Delta-G solvation = -31652.422636 eV Core-core repulsion = 27487.686916 eV Total energy + Delta-G solvation = -4164.735720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96282 -38.86183 -37.74542 -37.28011 -34.72650 -33.67140 -33.38868 -32.72009 -31.73832 -31.19828 -28.39012 -27.11132 -26.16575 -24.50631 -24.40076 -23.51848 -20.99634 -20.78239 -20.27879 -19.75713 -18.91779 -17.73600 -17.10401 -16.66483 -16.34937 -16.18909 -15.71089 -15.13704 -14.79270 -14.58837 -14.49051 -14.21394 -13.95367 -13.88778 -13.81679 -13.42404 -13.13441 -12.97229 -12.75380 -12.58552 -12.38571 -12.29137 -12.00050 -11.84309 -11.74526 -11.43880 -11.30126 -11.17983 -11.14214 -10.97953 -10.86839 -10.75554 -10.40656 -10.32603 -10.04204 -9.73134 -9.46903 -9.30366 -9.14651 -8.83542 -8.58259 -8.32484 -6.77974 -5.68199 -3.00111 2.49994 2.59043 3.43992 3.45115 3.48879 3.50390 3.53526 4.32397 4.39416 4.53552 4.55750 4.62316 4.70762 4.79009 4.85046 4.89870 4.92815 5.04920 5.12929 5.21707 5.32946 5.42342 5.45617 5.48796 5.54237 5.55926 5.63498 5.67362 5.73724 5.78505 5.79335 5.87027 6.02680 6.08376 6.11677 6.25018 6.32687 6.38758 6.77126 6.87037 7.15086 7.20014 7.42613 7.55475 7.80429 8.08150 8.14025 8.19753 8.28056 8.86316 9.25365 9.85919 10.51893 11.44315 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.002932 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.513936 B = 9546.455150 C =10188.205733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.499 3.501 4 O -0.490 6.490 5 N -0.608 5.608 6 C 0.111 3.889 7 C -0.137 4.137 8 C -0.117 4.117 9 C -0.123 4.123 10 C 0.129 3.871 11 H 0.084 0.916 12 C 0.531 3.469 13 O -0.525 6.525 14 N -0.707 5.707 15 C 0.150 3.850 16 H 0.104 0.896 17 C 0.131 3.869 18 N -0.601 5.601 19 C -0.222 4.222 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.925 5.925 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.155 3.845 28 C 0.068 3.932 29 H 0.058 0.942 30 O -0.568 6.568 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.400 0.600 45 H 0.024 0.976 46 H 0.041 0.959 47 H 0.251 0.749 48 H 0.050 0.950 49 H 0.055 0.945 50 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.407 -24.229 -0.702 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.287 3.713 4 O -0.362 6.362 5 N -0.346 5.346 6 C -0.012 4.012 7 C -0.176 4.176 8 C -0.155 4.155 9 C -0.161 4.161 10 C 0.022 3.978 11 H 0.102 0.898 12 C 0.316 3.684 13 O -0.400 6.400 14 N -0.359 5.359 15 C 0.044 3.956 16 H 0.122 0.878 17 C 0.004 3.996 18 N -0.327 5.327 19 C -0.351 4.351 20 H 0.097 0.903 21 C -0.206 4.206 22 N -0.574 5.574 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.030 3.970 28 C 0.008 3.992 29 H 0.076 0.924 30 O -0.374 6.374 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.234 0.766 45 H 0.042 0.958 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 12.686 -23.617 -1.920 26.877 hybrid contribution -0.172 0.993 0.683 1.217 sum 12.514 -22.624 -1.236 25.884 Atomic orbital electron populations 1.21543 0.92866 1.01390 1.03752 1.21623 0.98733 0.93655 1.03708 1.20946 0.81683 0.92267 0.76412 1.90881 1.54035 1.44631 1.46700 1.48036 1.05773 1.05676 1.75087 1.21748 0.91113 0.89424 0.98941 1.21949 0.98850 0.97834 0.98938 1.21508 0.97438 0.94090 1.02473 1.21825 0.96058 0.99636 0.98628 1.21174 0.94457 0.82097 1.00029 0.89833 1.19644 0.83987 0.80455 0.84280 1.90677 1.50348 1.68127 1.30888 1.45564 1.34159 1.40086 1.16048 1.22195 0.88947 0.89228 0.95252 0.87842 1.21848 0.92802 0.87942 0.97036 1.44278 1.40794 1.15013 1.32664 1.19107 1.21000 0.88962 1.06011 0.90326 1.24800 0.99299 0.98577 0.97900 1.69937 1.29754 1.35127 1.22546 0.86074 0.77863 0.84278 0.77439 1.21677 1.21696 1.20632 1.21833 0.95809 0.87404 0.91994 1.23488 0.88718 0.99019 0.87931 0.92430 1.86247 1.36489 1.94320 1.20300 0.92226 0.91879 0.91776 0.89250 0.89172 0.89448 0.91141 0.91217 0.90532 0.91145 0.91546 0.90116 0.90252 0.76577 0.95829 0.94061 0.93824 0.93155 0.92742 0.77583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.20 37.16 0.34 -1.01 16 2 C -0.14 -1.18 4.80 -27.88 -0.13 -1.32 16 3 C 0.50 6.53 7.56 -10.98 -0.08 6.45 16 4 O -0.49 -8.93 11.52 -19.28 -0.22 -9.15 16 5 N -0.61 -6.54 2.97 -166.54 -0.49 -7.04 16 6 C 0.11 0.69 6.33 -3.71 -0.02 0.67 16 7 C -0.14 -0.81 6.08 -26.61 -0.16 -0.97 16 8 C -0.12 -0.82 5.88 -26.69 -0.16 -0.97 16 9 C -0.12 -1.30 5.29 -26.61 -0.14 -1.44 16 10 C 0.13 1.58 3.31 -68.75 -0.23 1.35 16 11 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 12 C 0.53 9.20 4.41 -10.99 -0.05 9.15 16 13 O -0.52 -11.35 14.15 -19.28 -0.27 -11.63 16 14 N -0.71 -12.38 5.17 -51.73 -0.27 -12.65 16 15 C 0.15 3.13 3.31 -65.78 -0.22 2.91 16 16 H 0.10 2.43 7.54 -51.93 -0.39 2.04 16 17 C 0.13 3.10 6.92 -2.53 -0.02 3.08 16 18 N -0.60 -16.35 3.39 -170.08 -0.58 -16.93 16 19 C -0.22 -6.53 10.27 -15.06 -0.15 -6.68 16 20 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 21 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 22 N -0.93 -27.70 10.34 55.49 0.57 -27.12 16 23 Si 0.91 22.84 29.56 -169.99 -5.02 17.82 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.16 3.88 5.15 -3.07 -0.02 3.86 16 28 C 0.07 1.36 4.19 -24.90 -0.10 1.26 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 O -0.57 -9.86 12.15 -35.23 -0.43 -10.29 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.09 0.59 7.54 -51.93 -0.39 0.20 16 35 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 36 H 0.09 0.38 5.95 -51.93 -0.31 0.08 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 1.04 7.87 -51.93 -0.41 0.63 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.40 6.25 7.43 -40.82 -0.30 5.94 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.05 1.38 7.53 -51.93 -0.39 0.99 16 49 H 0.05 1.46 7.30 -51.93 -0.38 1.08 16 50 H 0.38 5.14 9.12 45.56 0.42 5.56 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -37.47 388.81 -9.70 -47.17 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.61 Total: 8.00 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: -1.24 Total: 15.94 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.77 Total: -63.73 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.92 Total: -31.06 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.47 -9.70 -47.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083484066.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.209 kcal (2) G-P(sol) polarization free energy of solvation -37.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds