Wall clock time and date at job start Sat Apr 11 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47038 * 2 1 4 4 O 1.21280 * 120.00217 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99542 * 179.97438 * 3 2 1 6 6 C 1.46920 * 120.63432 * 3.67997 * 5 3 2 7 7 C 1.53197 * 108.77330 * 126.39114 * 6 5 3 8 8 C 1.53034 * 109.31391 * 54.63437 * 7 6 5 9 9 C 1.53040 * 109.54055 * 298.63469 * 8 7 6 10 10 C 1.46930 * 120.62295 * 183.67641 * 5 3 2 11 11 H 1.09003 * 109.58203 * 113.82719 * 10 5 3 12 12 C 1.50693 * 109.70878 * 353.46886 * 10 5 3 13 13 O 1.21283 * 120.00145 * 294.67999 * 12 10 5 14 14 N 1.34784 * 119.99875 * 114.67451 * 12 10 5 15 15 C 1.46500 * 119.99632 * 180.02562 * 14 12 10 16 16 H 1.08998 * 110.89073 * 31.11910 * 15 14 12 17 17 C 1.54910 * 111.00252 * 267.19681 * 15 14 12 18 18 N 1.47422 * 104.83223 * 204.91956 * 17 15 14 19 19 C 1.36940 * 125.65237 * 204.10823 * 18 17 15 20 20 H 1.08003 * 119.99790 * 5.04426 * 19 18 17 21 21 C 1.38811 * 120.00396 * 185.04254 * 19 18 17 22 22 N 1.31622 * 120.00010 * 354.92398 * 21 19 18 23 23 Si 1.86802 * 119.99828 * 174.92830 * 21 19 18 24 24 H 1.48507 * 109.47114 * 95.00068 * 23 21 19 25 25 H 1.48503 * 109.46783 * 214.99645 * 23 21 19 26 26 H 1.48491 * 109.47211 * 334.99990 * 23 21 19 27 27 C 1.47020 * 108.70334 * 24.12664 * 18 17 15 28 28 C 1.54317 * 107.27216 * 358.94338 * 27 18 17 29 29 H 1.08998 * 110.72164 * 219.44299 * 28 27 18 30 30 O 1.42900 * 110.87583 * 96.23831 * 28 27 18 31 31 H 1.09003 * 109.47041 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47486 * 299.99312 * 1 2 3 33 33 H 1.09005 * 109.47484 * 59.99997 * 1 2 3 34 34 H 1.09004 * 109.47031 * 240.00462 * 2 1 3 35 35 H 1.09001 * 109.47301 * 120.00729 * 2 1 3 36 36 H 1.09001 * 109.58532 * 6.60445 * 6 5 3 37 37 H 1.08998 * 109.70346 * 246.24585 * 6 5 3 38 38 H 1.09006 * 109.49683 * 294.67757 * 7 6 5 39 39 H 1.09004 * 109.49465 * 174.59268 * 7 6 5 40 40 H 1.09005 * 109.45758 * 178.61545 * 8 7 6 41 41 H 1.08997 * 109.44801 * 58.65183 * 8 7 6 42 42 H 1.08999 * 109.49588 * 301.41696 * 9 8 7 43 43 H 1.08991 * 109.52477 * 181.33681 * 9 8 7 44 44 H 0.96995 * 120.00130 * 0.02562 * 14 12 10 45 45 H 1.09001 * 110.36877 * 323.75501 * 17 15 14 46 46 H 1.09000 * 110.36857 * 86.08540 * 17 15 14 47 47 H 0.96996 * 119.99725 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.88699 * 239.51970 * 27 18 17 49 49 H 1.09001 * 110.01223 * 118.43502 * 27 18 17 50 50 H 0.96709 * 113.99726 * 66.38886 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3239 0.5634 -0.0800 7 6 5.2831 0.8321 -1.2440 8 6 5.9190 2.2129 -1.0674 9 6 4.8271 3.2851 -1.0840 10 6 3.8627 3.0443 0.0816 11 1 4.3885 3.1855 1.0259 12 6 2.7123 4.0137 -0.0060 13 8 2.0604 4.0906 -1.0258 14 7 2.4078 4.7952 1.0491 15 6 1.2890 5.7372 0.9641 16 1 0.5090 5.3558 0.3051 17 6 1.7734 7.1342 0.5020 18 7 0.7687 8.0754 1.0294 19 6 0.4954 9.3178 0.5225 20 1 0.9788 9.6492 -0.3846 21 6 -0.4030 10.1512 1.1745 22 7 -1.0671 9.7117 2.2224 23 14 -0.6696 11.8966 0.5645 24 1 -1.8440 11.9295 -0.3439 25 1 -0.9143 12.7936 1.7224 26 1 0.5372 12.3541 -0.1699 27 6 0.1091 7.4595 2.1900 28 6 0.7210 6.0546 2.3726 29 1 -0.0468 5.3326 2.6505 30 8 1.7669 6.0774 3.3461 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.7947 -0.3739 -0.2515 37 1 4.8876 0.4999 0.8507 38 1 4.7318 0.8028 -2.1839 39 1 6.0633 0.0709 -1.2555 40 1 6.6205 2.3963 -1.8813 41 1 6.4493 2.2492 -0.1159 42 1 4.2801 3.2328 -2.0254 43 1 5.2824 4.2701 -0.9821 44 1 2.9293 4.7339 1.8646 45 1 2.7553 7.3532 0.9215 46 1 1.8051 7.1839 -0.5864 47 1 -1.6952 10.2939 2.6778 48 1 -0.9621 7.3763 2.0067 49 1 0.2867 8.0600 3.0822 50 1 1.4644 6.2716 4.2439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083484066.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:27 Heat of formation + Delta-G solvation = -113.342984 kcal Electronic energy + Delta-G solvation = -31653.678528 eV Core-core repulsion = 27487.686916 eV Total energy + Delta-G solvation = -4165.991612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.99374 -40.37567 -39.09013 -38.30799 -36.49818 -35.32106 -34.25183 -33.68754 -33.35515 -32.19351 -30.27998 -28.88356 -27.17818 -26.36312 -25.08251 -24.56283 -22.44390 -21.92683 -21.71330 -21.36767 -19.84143 -19.26945 -18.56214 -18.30845 -17.43112 -17.24885 -16.90639 -16.58142 -16.44549 -15.83949 -15.53228 -15.44330 -15.16479 -15.04590 -14.76731 -14.66584 -14.45679 -14.39266 -14.38263 -13.92409 -13.82630 -13.44055 -13.21754 -13.03285 -12.82247 -12.74139 -12.61542 -12.48645 -12.30910 -12.15499 -12.10261 -12.01105 -11.96539 -11.88752 -11.71783 -11.57917 -10.94617 -10.78157 -10.64703 -10.47913 -9.96023 -9.63147 -8.97824 -7.91743 -5.28036 1.42748 1.45165 1.52589 1.54843 1.67081 2.13995 2.31970 2.47407 3.16518 3.26430 3.46426 3.62663 3.77382 3.82388 3.86850 3.88511 3.97485 4.07832 4.14088 4.17170 4.21900 4.23967 4.25518 4.48181 4.50653 4.62552 4.66017 4.74048 4.77776 4.84111 4.89093 4.93974 5.02903 5.06155 5.08621 5.14905 5.22451 5.30357 5.32594 5.43362 5.45849 5.52072 5.58917 5.59572 6.10880 6.38670 6.71626 6.83788 7.02727 7.21377 7.54039 7.66862 8.32191 9.18796 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.002932 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.513936 B = 9546.455150 C =10188.205733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.483 3.517 4 O -0.554 6.554 5 N -0.604 5.604 6 C 0.103 3.897 7 C -0.135 4.135 8 C -0.112 4.112 9 C -0.121 4.121 10 C 0.133 3.867 11 H 0.113 0.887 12 C 0.526 3.474 13 O -0.575 6.575 14 N -0.699 5.699 15 C 0.164 3.836 16 H 0.071 0.929 17 C 0.136 3.864 18 N -0.621 5.621 19 C -0.251 4.251 20 H 0.077 0.923 21 C -0.061 4.061 22 N -0.948 5.948 23 Si 0.983 3.017 24 H -0.286 1.286 25 H -0.286 1.286 26 H -0.270 1.270 27 C 0.163 3.837 28 C 0.095 3.905 29 H 0.077 0.923 30 O -0.560 6.560 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.412 0.588 45 H 0.029 0.971 46 H 0.022 0.978 47 H 0.250 0.750 48 H 0.017 0.983 49 H 0.034 0.966 50 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.147 -26.831 0.311 31.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.273 3.727 4 O -0.431 6.431 5 N -0.341 5.341 6 C -0.018 4.018 7 C -0.173 4.173 8 C -0.149 4.149 9 C -0.160 4.160 10 C 0.026 3.974 11 H 0.131 0.869 12 C 0.315 3.685 13 O -0.454 6.454 14 N -0.352 5.352 15 C 0.057 3.943 16 H 0.089 0.911 17 C 0.009 3.991 18 N -0.348 5.348 19 C -0.380 4.380 20 H 0.094 0.906 21 C -0.254 4.254 22 N -0.596 5.596 23 Si 0.811 3.189 24 H -0.213 1.213 25 H -0.212 1.212 26 H -0.195 1.195 27 C 0.038 3.962 28 C 0.034 3.966 29 H 0.095 0.905 30 O -0.369 6.369 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.249 0.751 45 H 0.047 0.953 46 H 0.040 0.960 47 H 0.060 0.940 48 H 0.035 0.965 49 H 0.052 0.948 50 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 15.509 -26.281 -0.877 30.528 hybrid contribution -1.003 1.779 0.344 2.071 sum 14.506 -24.502 -0.533 28.479 Atomic orbital electron populations 1.21529 0.94307 1.02473 1.01176 1.21678 0.97384 0.91011 1.06559 1.21874 0.81994 0.93556 0.75283 1.90858 1.55703 1.46703 1.49875 1.48249 1.06028 1.05995 1.73800 1.22180 0.90658 0.88577 1.00364 1.21968 0.99402 0.97955 0.97983 1.21521 0.96158 0.93248 1.03992 1.21830 0.96547 1.01334 0.96257 1.21172 0.92270 0.81898 1.02074 0.86885 1.20599 0.84563 0.80362 0.83023 1.90647 1.52465 1.69428 1.32827 1.45443 1.33282 1.39473 1.16961 1.21650 0.89308 0.88301 0.95080 0.91077 1.21856 0.92371 0.89063 0.95822 1.44562 1.41656 1.15170 1.33435 1.19444 1.21688 0.90331 1.06528 0.90554 1.25682 0.98905 1.02565 0.98229 1.70137 1.29857 1.36250 1.23369 0.85001 0.77935 0.79017 0.76980 1.21340 1.21241 1.19483 1.21667 0.94269 0.89891 0.90400 1.23027 0.89292 0.96038 0.88241 0.90543 1.86203 1.35353 1.94080 1.21220 0.89118 0.94062 0.94851 0.86569 0.85606 0.86954 0.88471 0.92923 0.87262 0.90314 0.89445 0.93419 0.90504 0.75149 0.95286 0.95954 0.94039 0.96532 0.94839 0.75213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.20 71.98 0.66 -1.96 16 2 C -0.13 -1.86 4.80 29.85 0.14 -1.72 16 3 C 0.48 12.26 7.56 87.66 0.66 12.93 16 4 O -0.55 -21.06 11.52 20.72 0.24 -20.82 16 5 N -0.60 -11.71 2.97 -799.18 -2.38 -14.09 16 6 C 0.10 0.82 6.33 86.37 0.55 1.37 16 7 C -0.14 -1.06 6.08 30.67 0.19 -0.88 16 8 C -0.11 -1.19 5.88 30.62 0.18 -1.01 16 9 C -0.12 -2.45 5.29 30.67 0.16 -2.29 16 10 C 0.13 3.08 3.31 44.22 0.15 3.22 16 11 H 0.11 1.96 7.93 -2.39 -0.02 1.94 16 12 C 0.53 18.75 4.41 87.65 0.39 19.13 16 13 O -0.58 -26.51 14.15 20.71 0.29 -26.22 16 14 N -0.70 -24.81 5.17 -435.96 -2.25 -27.07 16 15 C 0.16 7.14 3.31 46.38 0.15 7.30 16 16 H 0.07 3.60 7.54 -2.39 -0.02 3.58 16 17 C 0.14 6.71 6.92 86.86 0.60 7.31 16 18 N -0.62 -35.29 3.39 -692.00 -2.35 -37.63 16 19 C -0.25 -15.27 10.27 84.03 0.86 -14.40 16 20 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 21 C -0.06 -3.61 5.48 84.86 0.47 -3.14 16 22 N -0.95 -58.29 10.34 21.65 0.22 -58.06 16 23 Si 0.98 47.75 29.56 68.60 2.03 49.77 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 26 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 27 C 0.16 8.50 5.15 86.73 0.45 8.94 16 28 C 0.09 3.82 4.19 31.78 0.13 3.96 16 29 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 30 O -0.56 -18.73 12.15 -148.98 -1.81 -20.54 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.03 0.82 8.10 -2.38 -0.02 0.80 16 34 H 0.12 1.11 7.54 -2.39 -0.02 1.09 16 35 H 0.13 0.98 8.07 -2.39 -0.02 0.97 16 36 H 0.11 0.38 5.95 -2.39 -0.01 0.37 16 37 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 40 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.05 1.28 7.87 -2.39 -0.02 1.26 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.41 12.43 7.43 -92.71 -0.69 11.74 16 45 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 48 H 0.02 0.96 7.53 -2.39 -0.02 0.94 16 49 H 0.03 1.86 7.30 -2.39 -0.02 1.85 16 50 H 0.40 10.09 9.12 -74.05 -0.68 9.41 16 Total: -1.00 -89.09 388.81 -0.68 -89.77 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.41 Total: 26.12 kcal Atomic # 6 Polarization: 33.02 SS G_CDS: 5.74 Total: 38.76 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -6.75 Total: -136.85 kcal Atomic # 8 Polarization: -66.30 SS G_CDS: -1.28 Total: -67.58 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.77 kcal Total: -89.09 -0.68 -89.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083484066.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.572 kcal (2) G-P(sol) polarization free energy of solvation -89.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds