Wall clock time and date at job start Sat Apr 11 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47523 * 2 1 4 4 N 1.46910 * 109.46877 * 119.99714 * 2 1 3 5 5 C 1.46900 * 110.99800 * 174.99993 * 4 2 1 6 6 C 1.53241 * 109.33796 * 187.25017 * 5 4 2 7 7 N 1.47075 * 108.52451 * 306.17549 * 6 5 4 8 8 C 1.34774 * 120.88329 * 231.18883 * 7 6 5 9 9 O 1.21348 * 120.00654 * 181.51558 * 8 7 6 10 10 C 1.49455 * 119.99516 * 1.50990 * 8 7 6 11 11 O 1.21345 * 120.00363 * 353.44742 * 10 8 7 12 12 N 1.34780 * 119.99851 * 173.17050 * 10 8 7 13 13 C 1.47428 * 125.64711 * 0.30178 * 12 10 8 14 14 C 1.54906 * 104.83234 * 204.09179 * 13 12 10 15 15 C 1.55159 * 101.58358 * 322.99076 * 14 13 12 16 16 O 1.42899 * 110.72189 * 277.14245 * 15 14 13 17 17 C 1.50697 * 110.72207 * 154.04142 * 15 14 13 18 18 H 1.08002 * 120.00187 * 0.02562 * 17 15 14 19 19 C 1.37880 * 119.99988 * 180.02562 * 17 15 14 20 20 N 1.31518 * 119.99779 * 359.97438 * 19 17 15 21 21 Si 1.86792 * 119.99993 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47381 * 59.99753 * 21 19 17 23 23 H 1.48504 * 109.47331 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47185 * 299.99775 * 21 19 17 25 25 C 1.47022 * 125.64896 * 179.97438 * 12 10 8 26 26 C 1.47080 * 118.23986 * 51.45107 * 7 6 5 27 27 C 1.46898 * 110.99589 * 299.30140 * 4 2 1 28 28 H 1.09001 * 109.47097 * 300.00410 * 1 2 3 29 29 H 1.09003 * 109.46396 * 60.00323 * 1 2 3 30 30 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47617 * 239.99512 * 2 1 3 32 32 H 1.08999 * 109.47433 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46906 * 300.00064 * 3 2 1 34 34 H 1.09001 * 109.47072 * 59.99178 * 3 2 1 35 35 H 1.08996 * 109.49218 * 67.29550 * 5 4 2 36 36 H 1.08998 * 109.51506 * 307.22505 * 5 4 2 37 37 H 1.09001 * 109.63176 * 186.45851 * 6 5 4 38 38 H 1.09008 * 109.62465 * 65.87985 * 6 5 4 39 39 H 1.09005 * 110.36480 * 322.93052 * 13 12 10 40 40 H 1.09002 * 110.36370 * 85.14355 * 13 12 10 41 41 H 1.09000 * 111.00772 * 81.06205 * 14 13 12 42 42 H 1.08996 * 111.00614 * 204.91715 * 14 13 12 43 43 H 0.96701 * 114.00546 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99655 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.87986 * 298.39094 * 25 12 10 46 46 H 1.08997 * 109.88545 * 59.55734 * 25 12 10 47 47 H 1.09004 * 109.62546 * 68.25449 * 26 7 6 48 48 H 1.08999 * 109.63298 * 188.83619 * 26 7 6 49 49 H 1.09001 * 109.49479 * 292.70303 * 27 4 2 50 50 H 1.09001 * 109.49543 * 52.76544 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 3.4832 -0.8165 1.1753 6 6 3.9373 -1.6971 2.3442 7 7 3.3804 -1.1455 3.5887 8 6 4.1712 -0.9037 4.6529 9 8 3.6905 -0.4742 5.6810 10 6 5.6403 -1.1646 4.5668 11 8 6.1042 -1.7041 3.5839 12 7 6.4507 -0.7954 5.5785 13 6 6.0225 -0.1349 6.8251 14 6 7.2824 0.6106 7.3317 15 6 8.4082 -0.3881 6.9543 16 8 8.5354 -1.4062 7.9489 17 6 9.7176 0.3325 6.7612 18 1 9.7687 1.4036 6.8904 19 6 10.8503 -0.3755 6.4197 20 7 10.7882 -1.6798 6.2629 21 14 12.4735 0.5176 6.1811 22 1 12.8484 1.2082 7.4411 23 1 13.5296 -0.4624 5.8212 24 1 12.3331 1.5171 5.0917 25 6 7.9071 -0.9909 5.6248 26 6 1.9366 -0.8703 3.6431 27 6 1.5622 -0.0167 2.4210 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.9335 0.1718 1.2681 36 1 3.7945 -1.2712 0.2349 37 1 5.0259 -1.6995 2.3996 38 1 3.5730 -2.7143 2.1994 39 1 5.2187 0.5729 6.6226 40 1 5.6991 -0.8765 7.5556 41 1 7.4109 1.5594 6.8107 42 1 7.2396 0.7617 8.4103 43 1 9.2262 -2.0561 7.7605 44 1 11.5850 -2.1779 6.0222 45 1 8.1396 -2.0552 5.5870 46 1 8.3770 -0.4767 4.7864 47 1 1.3838 -1.8095 3.6207 48 1 1.7018 -0.3257 4.5576 49 1 2.0394 0.9605 2.4965 50 1 0.4801 0.1088 2.3839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332384756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:36 Heat of formation + Delta-G solvation = -80.395228 kcal Electronic energy + Delta-G solvation = -31242.837062 eV Core-core repulsion = 27078.274172 eV Total energy + Delta-G solvation = -4164.562890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.80774 -39.38595 -38.21904 -37.41668 -35.70396 -34.28262 -32.21369 -31.76020 -31.32812 -30.23007 -28.01433 -27.56133 -27.17402 -25.72247 -24.35842 -23.43735 -22.22473 -21.33741 -19.94401 -19.57722 -18.74479 -17.28115 -16.99453 -16.77457 -16.09776 -15.94688 -15.59562 -15.24331 -15.16417 -14.94637 -14.60336 -14.42488 -14.24968 -14.14308 -13.45094 -13.16040 -13.04462 -12.96511 -12.83317 -12.60806 -12.42352 -12.32479 -12.08338 -11.95031 -11.77855 -11.59156 -11.54811 -11.28633 -11.16915 -11.10063 -10.95060 -10.88829 -10.63381 -10.56362 -10.45643 -10.14976 -9.37101 -8.94225 -8.81640 -8.67571 -8.44162 -8.36676 -8.08359 -6.34549 -4.43315 1.72726 2.51929 3.19431 3.25153 3.27199 3.46132 3.57136 3.79027 4.22473 4.44341 4.52636 4.65234 4.78214 4.87776 4.93368 4.95795 5.03822 5.16726 5.26997 5.28314 5.35139 5.44152 5.47011 5.51001 5.58114 5.60787 5.71379 5.79693 5.82199 5.86909 5.88213 5.96216 6.00916 6.10357 6.25051 6.36113 6.47412 6.72696 6.76512 6.78811 6.79042 6.86675 7.14668 7.20632 7.28175 7.68144 7.76124 7.96275 8.02066 8.37150 8.60196 9.25916 9.39546 10.73214 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.002671 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.719181 B =10478.726114 C =11103.724983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.188 4.188 4 N -0.533 5.533 5 C 0.041 3.959 6 C 0.058 3.942 7 N -0.587 5.587 8 C 0.511 3.489 9 O -0.521 6.521 10 C 0.509 3.491 11 O -0.528 6.528 12 N -0.570 5.570 13 C 0.101 3.899 14 C -0.121 4.121 15 C 0.249 3.751 16 O -0.585 6.585 17 C -0.537 4.537 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.096 3.904 26 C 0.113 3.887 27 C 0.037 3.963 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.386 0.614 44 H 0.272 0.728 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.042 0.958 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.540 2.654 -10.506 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.257 5.257 5 C -0.087 4.087 6 C -0.063 4.063 7 N -0.321 5.321 8 C 0.294 3.706 9 O -0.397 6.397 10 C 0.293 3.707 11 O -0.410 6.410 12 N -0.300 5.300 13 C -0.021 4.021 14 C -0.159 4.159 15 C 0.208 3.792 16 O -0.395 6.395 17 C -0.575 4.575 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.536 5.536 21 Si 0.733 3.267 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.025 4.025 26 C -0.009 4.009 27 C -0.091 4.091 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.178 0.822 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.238 0.762 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.114 0.886 49 H 0.060 0.940 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.143 2.278 -10.252 20.964 hybrid contribution 1.547 0.839 -0.638 1.872 sum -16.597 3.117 -10.891 20.094 Atomic orbital electron populations 1.21879 0.94296 1.02462 1.01635 1.21724 0.95755 0.92476 0.93375 1.22495 1.01769 0.98103 1.02347 1.62267 1.11118 1.50729 1.01630 1.22543 0.87006 0.99474 0.99682 1.23402 1.06036 0.96277 0.80603 1.47999 1.07971 1.62345 1.13771 1.20275 0.87951 0.78741 0.83589 1.90698 1.75704 1.44227 1.29081 1.19629 0.86670 0.81057 0.83356 1.90262 1.75729 1.44873 1.30100 1.48724 1.10056 1.54391 1.16862 1.22618 0.97893 0.96604 0.84976 1.22838 0.93551 0.98187 1.01371 1.19491 0.92164 0.84827 0.82676 1.86097 1.61207 1.42752 1.49413 1.21489 0.92826 0.94729 1.48498 0.91410 1.25087 0.99659 0.95057 0.93479 1.69562 1.30517 1.06123 1.47365 0.86423 0.82094 0.79365 0.78822 1.19935 1.21031 1.20015 1.23319 0.74586 1.02037 1.02514 1.21881 0.80169 1.00364 0.98509 1.22631 1.01063 0.95780 0.89674 0.92532 0.92295 0.91754 0.89844 0.92358 0.92061 0.92386 0.94186 0.89557 0.82162 0.91084 0.89908 0.91080 0.90533 0.90192 0.76184 0.91766 0.91013 0.90862 0.90516 0.88635 0.94026 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.00 37.16 0.33 -0.63 16 2 C 0.07 0.60 2.96 -67.71 -0.20 0.40 16 3 C -0.19 -1.49 8.51 37.16 0.32 -1.17 16 4 N -0.53 -5.18 4.61 -226.04 -1.04 -6.22 16 5 C 0.04 0.45 5.14 -3.70 -0.02 0.43 16 6 C 0.06 0.76 6.35 -3.60 -0.02 0.74 16 7 N -0.59 -8.32 3.00 -172.68 -0.52 -8.84 16 8 C 0.51 8.79 7.72 -11.58 -0.09 8.70 16 9 O -0.52 -9.52 13.34 5.50 0.07 -9.45 16 10 C 0.51 9.95 7.83 -11.58 -0.09 9.86 16 11 O -0.53 -10.73 13.36 5.50 0.07 -10.66 16 12 N -0.57 -11.84 3.33 -171.01 -0.57 -12.41 16 13 C 0.10 1.95 5.96 -2.53 -0.02 1.93 16 14 C -0.12 -2.47 6.23 -24.58 -0.15 -2.62 16 15 C 0.25 5.95 0.86 -89.93 -0.08 5.87 16 16 O -0.58 -14.67 13.07 -35.23 -0.46 -15.14 16 17 C -0.54 -13.73 8.12 -34.44 -0.28 -14.01 16 18 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 19 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 20 N -0.90 -23.21 10.97 55.43 0.61 -22.60 16 21 Si 0.91 20.00 29.54 -169.99 -5.02 14.98 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 C 0.10 2.26 5.54 -3.06 -0.02 2.24 16 26 C 0.11 1.29 6.62 -3.36 -0.02 1.27 16 27 C 0.04 0.36 4.78 -3.46 -0.02 0.34 16 28 H 0.06 0.37 6.27 -51.93 -0.33 0.04 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.64 8.07 -51.93 -0.42 0.23 16 32 H 0.06 0.52 6.69 -51.93 -0.35 0.17 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 35 H 0.04 0.47 6.81 -51.93 -0.35 0.12 16 36 H 0.09 0.82 8.05 -51.93 -0.42 0.41 16 37 H 0.16 2.50 3.92 -56.53 -0.22 2.28 16 38 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.08 1.50 6.34 -51.93 -0.33 1.17 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 42 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 43 H 0.39 9.91 6.98 45.56 0.32 10.23 16 44 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 45 H 0.07 1.81 8.07 -51.93 -0.42 1.39 16 46 H 0.07 1.82 7.82 -51.93 -0.41 1.41 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.10 1.13 7.07 -51.93 -0.37 0.76 16 49 H 0.04 0.44 6.71 -51.93 -0.35 0.10 16 50 H 0.09 0.71 5.97 -51.93 -0.31 0.40 16 LS Contribution 379.85 15.07 5.72 5.72 Total: -1.00 -27.42 379.85 -8.78 -36.21 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -7.20 Total: 13.35 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: -0.45 Total: 15.05 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -1.52 Total: -50.07 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.31 Total: -35.24 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.42 -8.78 -36.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332384756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.190 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds