Wall clock time and date at job start Sat Apr 11 2020 05:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47523 * 2 1 4 4 N 1.46910 * 109.46877 * 119.99714 * 2 1 3 5 5 C 1.46900 * 110.99800 * 174.99993 * 4 2 1 6 6 C 1.53241 * 109.33796 * 187.25017 * 5 4 2 7 7 N 1.47075 * 108.52451 * 306.17549 * 6 5 4 8 8 C 1.34774 * 120.88329 * 231.18883 * 7 6 5 9 9 O 1.21348 * 120.00654 * 181.51558 * 8 7 6 10 10 C 1.49455 * 119.99516 * 1.50990 * 8 7 6 11 11 O 1.21345 * 120.00363 * 353.44742 * 10 8 7 12 12 N 1.34780 * 119.99851 * 173.17050 * 10 8 7 13 13 C 1.47428 * 125.64711 * 0.30178 * 12 10 8 14 14 C 1.54906 * 104.83234 * 204.09179 * 13 12 10 15 15 C 1.55159 * 101.58358 * 322.99076 * 14 13 12 16 16 O 1.42899 * 110.72189 * 277.14245 * 15 14 13 17 17 C 1.50697 * 110.72207 * 154.04142 * 15 14 13 18 18 H 1.08002 * 120.00187 * 0.02562 * 17 15 14 19 19 C 1.37880 * 119.99988 * 180.02562 * 17 15 14 20 20 N 1.31518 * 119.99779 * 359.97438 * 19 17 15 21 21 Si 1.86792 * 119.99993 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47381 * 59.99753 * 21 19 17 23 23 H 1.48504 * 109.47331 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47185 * 299.99775 * 21 19 17 25 25 C 1.47022 * 125.64896 * 179.97438 * 12 10 8 26 26 C 1.47080 * 118.23986 * 51.45107 * 7 6 5 27 27 C 1.46898 * 110.99589 * 299.30140 * 4 2 1 28 28 H 1.09001 * 109.47097 * 300.00410 * 1 2 3 29 29 H 1.09003 * 109.46396 * 60.00323 * 1 2 3 30 30 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47617 * 239.99512 * 2 1 3 32 32 H 1.08999 * 109.47433 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46906 * 300.00064 * 3 2 1 34 34 H 1.09001 * 109.47072 * 59.99178 * 3 2 1 35 35 H 1.08996 * 109.49218 * 67.29550 * 5 4 2 36 36 H 1.08998 * 109.51506 * 307.22505 * 5 4 2 37 37 H 1.09001 * 109.63176 * 186.45851 * 6 5 4 38 38 H 1.09008 * 109.62465 * 65.87985 * 6 5 4 39 39 H 1.09005 * 110.36480 * 322.93052 * 13 12 10 40 40 H 1.09002 * 110.36370 * 85.14355 * 13 12 10 41 41 H 1.09000 * 111.00772 * 81.06205 * 14 13 12 42 42 H 1.08996 * 111.00614 * 204.91715 * 14 13 12 43 43 H 0.96701 * 114.00546 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99655 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.87986 * 298.39094 * 25 12 10 46 46 H 1.08997 * 109.88545 * 59.55734 * 25 12 10 47 47 H 1.09004 * 109.62546 * 68.25449 * 26 7 6 48 48 H 1.08999 * 109.63298 * 188.83619 * 26 7 6 49 49 H 1.09001 * 109.49479 * 292.70303 * 27 4 2 50 50 H 1.09001 * 109.49543 * 52.76544 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 3.4832 -0.8165 1.1753 6 6 3.9373 -1.6971 2.3442 7 7 3.3804 -1.1455 3.5887 8 6 4.1712 -0.9037 4.6529 9 8 3.6905 -0.4742 5.6810 10 6 5.6403 -1.1646 4.5668 11 8 6.1042 -1.7041 3.5839 12 7 6.4507 -0.7954 5.5785 13 6 6.0225 -0.1349 6.8251 14 6 7.2824 0.6106 7.3317 15 6 8.4082 -0.3881 6.9543 16 8 8.5354 -1.4062 7.9489 17 6 9.7176 0.3325 6.7612 18 1 9.7687 1.4036 6.8904 19 6 10.8503 -0.3755 6.4197 20 7 10.7882 -1.6798 6.2629 21 14 12.4735 0.5176 6.1811 22 1 12.8484 1.2082 7.4411 23 1 13.5296 -0.4624 5.8212 24 1 12.3331 1.5171 5.0917 25 6 7.9071 -0.9909 5.6248 26 6 1.9366 -0.8703 3.6431 27 6 1.5622 -0.0167 2.4210 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.9335 0.1718 1.2681 36 1 3.7945 -1.2712 0.2349 37 1 5.0259 -1.6995 2.3996 38 1 3.5730 -2.7143 2.1994 39 1 5.2187 0.5729 6.6226 40 1 5.6991 -0.8765 7.5556 41 1 7.4109 1.5594 6.8107 42 1 7.2396 0.7617 8.4103 43 1 9.2262 -2.0561 7.7605 44 1 11.5850 -2.1779 6.0222 45 1 8.1396 -2.0552 5.5870 46 1 8.3770 -0.4767 4.7864 47 1 1.3838 -1.8095 3.6207 48 1 1.7018 -0.3257 4.5576 49 1 2.0394 0.9605 2.4965 50 1 0.4801 0.1088 2.3839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332384756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:35 Heat of formation + Delta-G solvation = -100.376474 kcal Electronic energy + Delta-G solvation = -31243.703514 eV Core-core repulsion = 27078.274172 eV Total energy + Delta-G solvation = -4165.429342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16123 -40.58792 -39.52175 -39.04653 -36.89563 -35.95076 -34.18645 -32.60899 -32.25920 -31.93702 -29.78837 -28.37339 -28.14032 -27.32009 -25.59346 -24.74972 -23.54062 -22.40395 -21.46556 -20.95638 -19.89892 -19.19177 -18.32077 -18.16236 -17.50119 -17.13202 -17.00263 -16.77750 -16.32782 -16.03916 -15.98353 -15.60918 -15.41487 -15.04376 -14.85359 -14.82033 -14.74608 -14.27088 -14.04181 -13.78147 -13.57284 -13.46673 -13.41330 -13.18997 -12.94530 -12.85853 -12.77875 -12.61124 -12.35381 -12.32742 -12.27101 -12.18587 -12.10391 -11.97298 -11.74681 -11.55926 -11.19385 -10.65648 -10.40785 -10.11076 -10.06103 -9.75680 -9.27136 -8.28229 -6.44158 0.26476 1.16006 1.44146 1.44995 1.52768 2.02291 2.27018 2.38874 2.87865 2.97103 3.04713 3.76422 3.79054 3.88073 3.95142 4.03082 4.12559 4.12726 4.16584 4.31645 4.32949 4.35709 4.40160 4.50435 4.57898 4.63602 4.68233 4.75147 4.80025 4.83453 4.86917 4.93711 4.99684 5.00366 5.05852 5.07637 5.13402 5.27429 5.30216 5.32440 5.39810 5.44469 5.72672 5.88295 6.00203 6.02110 6.12772 6.27311 6.55859 6.64507 6.84991 7.27632 7.37656 8.78095 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.002671 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.719181 B =10478.726114 C =11103.724983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 C -0.185 4.185 4 N -0.534 5.534 5 C 0.049 3.951 6 C 0.059 3.941 7 N -0.577 5.577 8 C 0.514 3.486 9 O -0.534 6.534 10 C 0.504 3.496 11 O -0.541 6.541 12 N -0.580 5.580 13 C 0.111 3.889 14 C -0.115 4.115 15 C 0.235 3.765 16 O -0.590 6.590 17 C -0.557 4.557 18 H 0.069 0.931 19 C 0.028 3.972 20 N -0.916 5.916 21 Si 0.965 3.035 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.114 3.886 26 C 0.111 3.889 27 C 0.043 3.957 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.101 0.899 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.380 0.620 44 H 0.273 0.727 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.032 0.968 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.394 3.577 -11.570 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.243 4.243 4 N -0.259 5.259 5 C -0.080 4.080 6 C -0.062 4.062 7 N -0.310 5.310 8 C 0.296 3.704 9 O -0.412 6.412 10 C 0.289 3.711 11 O -0.422 6.422 12 N -0.311 5.311 13 C -0.010 4.010 14 C -0.153 4.153 15 C 0.194 3.806 16 O -0.400 6.400 17 C -0.595 4.595 18 H 0.087 0.913 19 C -0.173 4.173 20 N -0.555 5.555 21 Si 0.790 3.210 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.008 4.008 26 C -0.010 4.010 27 C -0.085 4.085 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.119 0.881 37 H 0.154 0.846 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.231 0.769 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.050 0.950 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.046 3.204 -11.348 23.257 hybrid contribution 2.060 0.502 -0.408 2.159 sum -17.985 3.706 -11.756 21.804 Atomic orbital electron populations 1.21846 0.92922 1.02615 1.02415 1.21814 0.96766 0.92228 0.92566 1.22457 1.00865 0.98230 1.02785 1.62283 1.10007 1.51229 1.02385 1.22425 0.88005 0.98393 0.99138 1.23290 1.04594 0.97375 0.80990 1.48120 1.09033 1.60802 1.13062 1.19764 0.86792 0.79460 0.84374 1.90684 1.75433 1.45435 1.29646 1.20243 0.87938 0.80283 0.82669 1.90306 1.76610 1.44906 1.30404 1.48751 1.09059 1.55391 1.17927 1.22586 0.97681 0.96542 0.84201 1.22835 0.92442 0.97722 1.02267 1.19705 0.93028 0.85169 0.82694 1.86088 1.60928 1.42945 1.49991 1.21776 0.93899 0.94986 1.48879 0.91313 1.25803 1.02587 0.95729 0.93190 1.69659 1.31143 1.07106 1.47600 0.85493 0.78445 0.78274 0.78750 1.19506 1.20835 1.19700 1.22837 0.76494 0.99803 1.01654 1.22129 0.78019 1.01437 0.99458 1.22617 1.02377 0.94717 0.88835 0.92292 0.91024 0.91874 0.89384 0.93695 0.90758 0.92812 0.95337 0.88075 0.84575 0.90124 0.88251 0.91375 0.89549 0.89106 0.76918 0.91770 0.93740 0.93046 0.89088 0.88830 0.94963 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.00 71.98 0.65 -0.78 16 2 C 0.07 0.99 2.96 44.91 0.13 1.12 16 3 C -0.18 -2.55 8.51 71.98 0.61 -1.93 16 4 N -0.53 -9.14 4.61 -869.06 -4.01 -13.15 16 5 C 0.05 0.99 5.14 86.38 0.44 1.44 16 6 C 0.06 1.48 6.35 86.35 0.55 2.03 16 7 N -0.58 -15.75 3.00 -818.61 -2.46 -18.21 16 8 C 0.51 17.42 7.72 87.27 0.67 18.10 16 9 O -0.53 -19.02 13.34 -3.24 -0.04 -19.07 16 10 C 0.50 19.98 7.83 87.27 0.68 20.66 16 11 O -0.54 -22.55 13.36 -3.23 -0.04 -22.59 16 12 N -0.58 -24.53 3.33 -813.32 -2.70 -27.23 16 13 C 0.11 4.25 5.96 86.85 0.52 4.77 16 14 C -0.11 -4.62 6.23 31.99 0.20 -4.42 16 15 C 0.23 11.39 0.86 -10.35 -0.01 11.38 16 16 O -0.59 -30.27 13.07 -148.98 -1.95 -32.21 16 17 C -0.56 -28.78 8.12 25.60 0.21 -28.57 16 18 H 0.07 3.45 7.76 -2.91 -0.02 3.43 16 19 C 0.03 1.43 5.28 84.65 0.45 1.87 16 20 N -0.92 -48.42 10.97 21.45 0.24 -48.19 16 21 Si 0.97 41.11 29.54 68.60 2.03 43.13 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 C 0.11 5.55 5.54 86.73 0.48 6.03 16 26 C 0.11 2.30 6.62 86.50 0.57 2.87 16 27 C 0.04 0.73 4.78 86.54 0.41 1.14 16 28 H 0.06 0.57 6.27 -2.39 -0.01 0.56 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 1.12 8.07 -2.39 -0.02 1.11 16 32 H 0.04 0.74 6.69 -2.39 -0.02 0.72 16 33 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.05 0.79 6.56 -2.39 -0.02 0.77 16 35 H 0.03 0.65 6.81 -2.39 -0.02 0.64 16 36 H 0.10 1.76 8.05 -2.39 -0.02 1.74 16 37 H 0.14 4.28 3.92 -75.23 -0.29 3.98 16 38 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.10 3.48 6.34 -2.38 -0.02 3.46 16 40 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.09 3.27 8.03 -2.39 -0.02 3.25 16 42 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.38 20.17 6.98 -74.06 -0.52 19.66 16 44 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 45 H 0.04 2.35 8.07 -2.39 -0.02 2.34 16 46 H 0.05 2.66 7.82 -2.39 -0.02 2.64 16 47 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.09 2.03 7.07 -2.39 -0.02 2.01 16 49 H 0.03 0.63 6.71 -2.39 -0.02 0.61 16 50 H 0.11 1.42 5.97 -2.39 -0.01 1.41 16 Total: -1.00 -59.02 379.85 -2.21 -61.24 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: 0.16 Total: 40.57 kcal Atomic # 6 Polarization: 29.15 SS G_CDS: 6.57 Total: 35.72 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -8.94 Total: -106.79 kcal Atomic # 8 Polarization: -71.84 SS G_CDS: -2.03 Total: -73.87 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -59.02 -2.21 -61.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332384756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.141 kcal (2) G-P(sol) polarization free energy of solvation -59.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds