Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46835 * 2 1 4 4 N 1.46904 * 109.47012 * 174.89191 * 3 2 1 5 5 C 1.46894 * 110.99956 * 76.02398 * 4 3 2 6 6 C 1.52999 * 109.47200 * 199.54503 * 5 4 3 7 7 N 1.46495 * 109.47073 * 174.89113 * 6 5 4 8 8 C 1.34780 * 120.00264 * 179.97438 * 7 6 5 9 9 O 1.21611 * 119.99717 * 359.97438 * 8 7 6 10 10 C 1.47097 * 120.00404 * 179.97438 * 8 7 6 11 11 C 1.32083 * 118.87653 * 179.97438 * 10 8 7 12 12 C 1.50272 * 122.57827 * 180.65159 * 11 10 8 13 13 O 1.43066 * 110.00431 * 343.86968 * 12 11 10 14 14 C 1.43275 * 112.91489 * 50.93887 * 13 12 11 15 15 C 1.50417 * 118.87759 * 0.02562 * 10 8 7 16 16 C 1.46895 * 110.99921 * 199.98278 * 4 3 2 17 17 C 1.50701 * 109.47405 * 66.04596 * 16 4 3 18 18 O 1.21284 * 120.00059 * 359.97438 * 17 16 4 19 19 N 1.34780 * 119.99939 * 179.97438 * 17 16 4 20 20 C 1.37094 * 119.99877 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99974 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00124 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00328 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46617 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47190 * 119.99847 * 24 22 20 27 27 H 1.48498 * 109.47112 * 240.00182 * 24 22 20 28 28 H 1.08998 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46772 * 299.99437 * 1 2 3 30 30 H 1.08998 * 109.47219 * 59.99301 * 1 2 3 31 31 H 1.08996 * 109.46882 * 240.00748 * 2 1 3 32 32 H 1.09000 * 109.47133 * 120.00154 * 2 1 3 33 33 H 1.09008 * 109.47023 * 54.89448 * 3 2 1 34 34 H 1.08999 * 109.47485 * 294.89141 * 3 2 1 35 35 H 1.09007 * 109.46587 * 79.54533 * 5 4 3 36 36 H 1.08997 * 109.47069 * 319.54695 * 5 4 3 37 37 H 1.08992 * 109.47299 * 54.88923 * 6 5 4 38 38 H 1.09001 * 109.46697 * 294.88912 * 6 5 4 39 39 H 0.97003 * 120.00401 * 359.97438 * 7 6 5 40 40 H 1.07998 * 118.71171 * 0.37151 * 11 10 8 41 41 H 1.08997 * 109.37181 * 104.26274 * 12 11 10 42 42 H 1.08999 * 109.37099 * 223.88833 * 12 11 10 43 43 H 1.09004 * 109.63755 * 171.27832 * 14 13 12 44 44 H 1.08999 * 109.63918 * 50.66406 * 14 13 12 45 45 H 1.08997 * 109.45299 * 283.37558 * 15 10 8 46 46 H 1.09008 * 109.45207 * 43.30966 * 15 10 8 47 47 H 1.09002 * 109.47322 * 186.04234 * 16 4 3 48 48 H 1.09003 * 109.47096 * 306.04348 * 16 4 3 49 49 H 0.96998 * 120.00134 * 0.02562 * 19 17 16 50 50 H 0.96996 * 120.00052 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4444 0.1233 5 6 4.1397 1.0745 -1.1482 6 6 5.5752 0.6147 -0.8858 7 7 6.1690 0.1311 -2.1346 8 6 7.4366 -0.3267 -2.1451 9 8 8.0876 -0.3379 -1.1179 10 6 8.0327 -0.8128 -3.3989 11 6 9.2769 -1.2561 -3.3839 12 6 9.9720 -1.7579 -4.6180 13 8 9.0128 -2.0278 -5.6445 14 6 8.1187 -0.9321 -5.8745 15 6 7.2051 -0.7871 -4.6546 16 6 3.9906 2.7472 0.5961 17 6 3.5118 2.9811 2.0057 18 8 2.8315 2.1450 2.5617 19 7 3.8395 4.1195 2.6486 20 6 3.4043 4.3320 3.9311 21 1 2.7986 3.5874 4.4262 22 6 3.7417 5.5058 4.5938 23 7 4.4784 6.4120 3.9912 24 14 3.1482 5.7957 6.3411 25 1 2.3410 4.6325 6.7890 26 1 4.3184 5.9625 7.2401 27 1 2.3129 7.0228 6.3830 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6038 1.9821 0.8408 34 1 1.7533 1.9293 -0.9322 35 1 4.1505 1.9379 -1.8136 36 1 3.5779 0.2644 -1.6132 37 1 5.5703 -0.1897 -0.1503 38 1 6.1608 1.4515 -0.5051 39 1 5.6499 0.1404 -2.9540 40 1 9.8172 -1.2537 -2.4488 41 1 10.6781 -1.0044 -4.9669 42 1 10.5122 -2.6746 -4.3812 43 1 7.5169 -1.1303 -6.7615 44 1 8.6912 -0.0152 -6.0141 45 1 6.4915 -1.6107 -4.6360 46 1 6.6661 0.1585 -4.7148 47 1 5.0804 2.7569 0.5763 48 1 3.6084 3.5352 -0.0530 49 1 4.3832 4.7884 2.2038 50 1 4.7142 7.2312 4.4539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493286470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -102.474783 kcal Electronic energy + Delta-G solvation = -29244.855626 eV Core-core repulsion = 25079.335295 eV Total energy + Delta-G solvation = -4165.520331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50433 -39.15431 -38.71717 -36.98632 -35.01827 -34.14980 -33.84466 -32.97542 -31.56204 -31.20127 -29.41328 -27.57060 -26.47217 -24.96864 -24.40560 -23.68299 -21.99977 -21.46624 -20.61769 -19.19151 -18.77432 -17.97726 -17.84568 -16.87060 -16.39670 -15.89993 -15.80122 -15.67149 -15.43925 -14.94197 -14.87402 -14.65260 -14.31716 -14.12060 -13.91145 -13.73213 -13.61183 -13.41925 -13.18670 -12.97073 -12.89426 -12.42221 -12.11258 -12.01632 -11.74116 -11.60304 -11.52836 -11.45480 -11.29334 -11.15451 -10.95819 -10.61890 -10.53105 -10.33797 -10.29291 -10.21045 -9.89845 -9.55351 -9.46459 -9.16401 -8.43157 -7.98818 -7.91277 -6.40451 -3.81015 0.99562 2.88093 3.03057 3.17234 3.27796 3.34917 3.39181 3.90635 4.00154 4.19977 4.23434 4.30803 4.38459 4.70161 4.74459 4.81255 4.89741 4.97279 5.05231 5.06078 5.13963 5.21292 5.22653 5.25554 5.35409 5.39580 5.41717 5.60197 5.66240 5.67978 5.84898 5.87829 5.90174 5.99153 6.00504 6.05200 6.08259 6.25342 6.27805 6.30586 6.52278 6.55707 6.56746 7.24972 7.27101 7.36458 7.56769 8.03343 8.07777 8.62945 9.19582 9.55859 10.07377 10.77444 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012818 B = 0.002140 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.841634 B =13081.499257 C =14726.791306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.058 3.942 4 N -0.512 5.512 5 C 0.044 3.956 6 C 0.120 3.880 7 N -0.724 5.724 8 C 0.549 3.451 9 O -0.537 6.537 10 C -0.167 4.167 11 C -0.113 4.113 12 C 0.084 3.916 13 O -0.377 6.377 14 C 0.059 3.941 15 C -0.120 4.120 16 C 0.042 3.958 17 C 0.444 3.556 18 O -0.575 6.575 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.022 0.978 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.398 0.602 40 H 0.137 0.863 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.048 0.952 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.892 -12.070 -22.556 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.070 4.070 4 N -0.236 5.236 5 C -0.084 4.084 6 C -0.003 4.003 7 N -0.375 5.375 8 C 0.337 3.663 9 O -0.415 6.415 10 C -0.170 4.170 11 C -0.133 4.133 12 C 0.008 3.992 13 O -0.295 6.295 14 C -0.018 4.018 15 C -0.158 4.158 16 C -0.089 4.089 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.232 0.768 40 H 0.155 0.845 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.066 0.934 49 H 0.225 0.775 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.049 -12.963 -21.083 25.260 hybrid contribution -0.340 1.665 -0.142 1.705 sum 4.710 -11.299 -21.225 24.502 Atomic orbital electron populations 1.21718 0.96084 1.01180 1.01722 1.21429 0.94924 0.96701 1.01977 1.22251 0.86335 0.97601 1.00767 1.61402 1.06588 1.29440 1.26181 1.22256 0.94382 1.00112 0.91689 1.21386 0.92918 1.00464 0.85579 1.45850 1.14051 1.65034 1.12601 1.18365 0.81576 0.77665 0.88707 1.90829 1.61336 1.55300 1.33997 1.20868 0.96588 1.04882 0.94697 1.23735 0.95471 0.93261 1.00856 1.21647 0.90662 1.02023 0.84909 1.88197 1.46158 1.39491 1.55695 1.22659 0.91707 0.90224 0.97180 1.21087 0.98651 1.03472 0.92546 1.21950 1.00881 0.89831 0.96243 1.19690 0.85891 0.83845 0.87660 1.90509 1.42120 1.45062 1.68166 1.41880 1.47117 1.16887 1.14299 1.19739 1.30053 1.03423 0.89409 0.87848 1.25262 0.96969 0.95561 1.00240 1.69619 1.37410 1.09077 1.38247 0.85809 0.78430 0.78363 0.81801 1.19217 1.20746 1.20821 0.93008 0.92290 0.93390 0.93247 0.90688 0.88358 0.95945 0.94336 0.90220 0.90043 0.91126 0.76751 0.84504 0.90674 0.86903 0.87969 0.92362 0.89260 0.89586 0.89301 0.93404 0.77540 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.11 -1.53 5.98 -26.73 -0.16 -1.69 16 3 C 0.06 0.90 4.46 -3.82 -0.02 0.88 16 4 N -0.51 -8.16 4.10 -236.07 -0.97 -9.12 16 5 C 0.04 0.52 4.92 -3.83 -0.02 0.50 16 6 C 0.12 1.53 5.70 -4.04 -0.02 1.50 16 7 N -0.72 -7.44 5.50 -61.50 -0.34 -7.78 16 8 C 0.55 6.78 7.73 -12.67 -0.10 6.69 16 9 O -0.54 -8.98 16.06 5.27 0.08 -8.90 16 10 C -0.17 -1.54 5.86 -103.09 -0.60 -2.15 16 11 C -0.11 -0.98 9.58 -36.44 -0.35 -1.33 16 12 C 0.08 0.53 7.04 35.80 0.25 0.79 16 13 O -0.38 -2.97 10.85 -35.23 -0.38 -3.35 16 14 C 0.06 0.33 6.87 37.21 0.26 0.59 16 15 C -0.12 -0.73 5.29 -27.97 -0.15 -0.88 16 16 C 0.04 0.74 5.27 -4.98 -0.03 0.72 16 17 C 0.44 10.39 7.29 -10.98 -0.08 10.31 16 18 O -0.57 -15.24 14.12 5.55 0.08 -15.16 16 19 N -0.57 -14.34 5.29 -10.96 -0.06 -14.39 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16 24 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.58 6.91 -51.93 -0.36 0.22 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.89 5.85 -51.92 -0.30 1.58 16 34 H 0.02 0.31 7.99 -51.93 -0.42 -0.11 16 35 H 0.04 0.41 8.00 -51.92 -0.42 -0.01 16 36 H 0.08 0.81 6.58 -51.93 -0.34 0.47 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.01 6.95 -51.93 -0.36 0.65 16 39 H 0.40 2.79 6.78 -40.82 -0.28 2.52 16 40 H 0.14 1.30 7.29 -52.49 -0.38 0.92 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.38 7.31 -51.92 -0.38 0.00 16 47 H 0.09 1.47 6.71 -51.93 -0.35 1.12 16 48 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 49 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -34.33 404.16 -8.74 -43.07 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -8.06 Total: 10.78 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -0.89 Total: 6.56 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.64 Total: -55.29 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.22 Total: -27.41 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.33 -8.74 -43.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493286470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.401 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds