Wall clock time and date at job start Sat Apr 11 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46835 * 2 1 4 4 N 1.46904 * 109.47012 * 174.89191 * 3 2 1 5 5 C 1.46894 * 110.99956 * 76.02398 * 4 3 2 6 6 C 1.52999 * 109.47200 * 199.54503 * 5 4 3 7 7 N 1.46495 * 109.47073 * 174.89113 * 6 5 4 8 8 C 1.34780 * 120.00264 * 179.97438 * 7 6 5 9 9 O 1.21611 * 119.99717 * 359.97438 * 8 7 6 10 10 C 1.47097 * 120.00404 * 179.97438 * 8 7 6 11 11 C 1.32083 * 118.87653 * 179.97438 * 10 8 7 12 12 C 1.50272 * 122.57827 * 180.65159 * 11 10 8 13 13 O 1.43066 * 110.00431 * 343.86968 * 12 11 10 14 14 C 1.43275 * 112.91489 * 50.93887 * 13 12 11 15 15 C 1.50417 * 118.87759 * 0.02562 * 10 8 7 16 16 C 1.46895 * 110.99921 * 199.98278 * 4 3 2 17 17 C 1.50701 * 109.47405 * 66.04596 * 16 4 3 18 18 O 1.21284 * 120.00059 * 359.97438 * 17 16 4 19 19 N 1.34780 * 119.99939 * 179.97438 * 17 16 4 20 20 C 1.37094 * 119.99877 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99974 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00124 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00328 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46617 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47190 * 119.99847 * 24 22 20 27 27 H 1.48498 * 109.47112 * 240.00182 * 24 22 20 28 28 H 1.08998 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46772 * 299.99437 * 1 2 3 30 30 H 1.08998 * 109.47219 * 59.99301 * 1 2 3 31 31 H 1.08996 * 109.46882 * 240.00748 * 2 1 3 32 32 H 1.09000 * 109.47133 * 120.00154 * 2 1 3 33 33 H 1.09008 * 109.47023 * 54.89448 * 3 2 1 34 34 H 1.08999 * 109.47485 * 294.89141 * 3 2 1 35 35 H 1.09007 * 109.46587 * 79.54533 * 5 4 3 36 36 H 1.08997 * 109.47069 * 319.54695 * 5 4 3 37 37 H 1.08992 * 109.47299 * 54.88923 * 6 5 4 38 38 H 1.09001 * 109.46697 * 294.88912 * 6 5 4 39 39 H 0.97003 * 120.00401 * 359.97438 * 7 6 5 40 40 H 1.07998 * 118.71171 * 0.37151 * 11 10 8 41 41 H 1.08997 * 109.37181 * 104.26274 * 12 11 10 42 42 H 1.08999 * 109.37099 * 223.88833 * 12 11 10 43 43 H 1.09004 * 109.63755 * 171.27832 * 14 13 12 44 44 H 1.08999 * 109.63918 * 50.66406 * 14 13 12 45 45 H 1.08997 * 109.45299 * 283.37558 * 15 10 8 46 46 H 1.09008 * 109.45207 * 43.30966 * 15 10 8 47 47 H 1.09002 * 109.47322 * 186.04234 * 16 4 3 48 48 H 1.09003 * 109.47096 * 306.04348 * 16 4 3 49 49 H 0.96998 * 120.00134 * 0.02562 * 19 17 16 50 50 H 0.96996 * 120.00052 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4444 0.1233 5 6 4.1397 1.0745 -1.1482 6 6 5.5752 0.6147 -0.8858 7 7 6.1690 0.1311 -2.1346 8 6 7.4366 -0.3267 -2.1451 9 8 8.0876 -0.3379 -1.1179 10 6 8.0327 -0.8128 -3.3989 11 6 9.2769 -1.2561 -3.3839 12 6 9.9720 -1.7579 -4.6180 13 8 9.0128 -2.0278 -5.6445 14 6 8.1187 -0.9321 -5.8745 15 6 7.2051 -0.7871 -4.6546 16 6 3.9906 2.7472 0.5961 17 6 3.5118 2.9811 2.0057 18 8 2.8315 2.1450 2.5617 19 7 3.8395 4.1195 2.6486 20 6 3.4043 4.3320 3.9311 21 1 2.7986 3.5874 4.4262 22 6 3.7417 5.5058 4.5938 23 7 4.4784 6.4120 3.9912 24 14 3.1482 5.7957 6.3411 25 1 2.3410 4.6325 6.7890 26 1 4.3184 5.9625 7.2401 27 1 2.3129 7.0228 6.3830 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6038 1.9821 0.8408 34 1 1.7533 1.9293 -0.9322 35 1 4.1505 1.9379 -1.8136 36 1 3.5779 0.2644 -1.6132 37 1 5.5703 -0.1897 -0.1503 38 1 6.1608 1.4515 -0.5051 39 1 5.6499 0.1404 -2.9540 40 1 9.8172 -1.2537 -2.4488 41 1 10.6781 -1.0044 -4.9669 42 1 10.5122 -2.6746 -4.3812 43 1 7.5169 -1.1303 -6.7615 44 1 8.6912 -0.0152 -6.0141 45 1 6.4915 -1.6107 -4.6360 46 1 6.6661 0.1585 -4.7148 47 1 5.0804 2.7569 0.5763 48 1 3.6084 3.5352 -0.0530 49 1 4.3832 4.7884 2.2038 50 1 4.7142 7.2312 4.4539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493286470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:39 Heat of formation + Delta-G solvation = -129.179428 kcal Electronic energy + Delta-G solvation = -29246.013626 eV Core-core repulsion = 25079.335295 eV Total energy + Delta-G solvation = -4166.678331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.32286 -40.50290 -39.70042 -38.45787 -36.15571 -35.79343 -34.81926 -34.08522 -33.23254 -32.06881 -30.53210 -28.95606 -27.15750 -26.67525 -25.35598 -24.51486 -23.07796 -22.40521 -21.79149 -20.95471 -19.88637 -19.53903 -18.61753 -17.94943 -17.54587 -16.96708 -16.85787 -16.54935 -16.51194 -16.29183 -15.97948 -15.89886 -15.71449 -15.41565 -15.14230 -14.85822 -14.61810 -14.50346 -14.29263 -13.83837 -13.63449 -13.60123 -13.44823 -13.39417 -13.08649 -12.85525 -12.70610 -12.52514 -12.48809 -12.40978 -12.19635 -12.11311 -11.85686 -11.76125 -11.54500 -11.34852 -11.25667 -10.60356 -10.33154 -10.26332 -10.02772 -9.99635 -9.24396 -8.47147 -5.95362 0.25030 1.35116 1.40002 1.54231 1.96179 2.05495 2.14314 2.28482 2.81493 2.97830 3.19810 3.35099 3.57749 3.69946 3.83967 3.87675 3.99943 4.08694 4.20074 4.28537 4.32448 4.33298 4.40351 4.45614 4.46239 4.53139 4.54971 4.56201 4.63651 4.70135 4.77877 4.82546 4.94576 4.96714 4.98066 4.98804 5.21080 5.23108 5.32565 5.40659 5.41435 5.44221 5.46097 5.89110 6.08358 6.10585 6.19855 6.47665 6.60339 7.13046 7.14408 7.56551 8.12431 8.70703 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012818 B = 0.002140 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.841634 B =13081.499257 C =14726.791306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C 0.061 3.939 4 N -0.535 5.535 5 C 0.054 3.946 6 C 0.127 3.873 7 N -0.705 5.705 8 C 0.543 3.457 9 O -0.592 6.592 10 C -0.178 4.178 11 C -0.112 4.112 12 C 0.086 3.914 13 O -0.395 6.395 14 C 0.055 3.945 15 C -0.116 4.116 16 C 0.056 3.944 17 C 0.441 3.559 18 O -0.610 6.610 19 N -0.577 5.577 20 C -0.329 4.329 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.269 1.269 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.418 0.582 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.072 0.928 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.540 -12.150 -25.533 28.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.067 4.067 4 N -0.260 5.260 5 C -0.074 4.074 6 C 0.003 3.997 7 N -0.357 5.357 8 C 0.332 3.668 9 O -0.474 6.474 10 C -0.181 4.181 11 C -0.132 4.132 12 C 0.010 3.990 13 O -0.314 6.314 14 C -0.022 4.022 15 C -0.153 4.153 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.496 6.496 19 N -0.215 5.215 20 C -0.458 4.458 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.198 1.198 27 H -0.195 1.195 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.256 0.744 40 H 0.137 0.863 41 H 0.112 0.888 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.084 0.916 45 H 0.114 0.886 46 H 0.125 0.875 47 H 0.118 0.882 48 H 0.090 0.910 49 H 0.228 0.772 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.676 -13.037 -24.126 27.819 hybrid contribution -0.205 1.628 0.754 1.806 sum 4.471 -11.410 -23.372 26.389 Atomic orbital electron populations 1.21692 0.94868 1.02210 1.01559 1.21387 0.95972 0.95371 1.01767 1.22169 0.85896 0.98484 1.00114 1.61311 1.07175 1.28394 1.29072 1.22255 0.93203 1.01846 0.90072 1.21141 0.93692 0.98822 0.86079 1.45629 1.13600 1.63905 1.12608 1.18979 0.81712 0.76912 0.89164 1.90802 1.62728 1.57673 1.36186 1.20947 0.97161 1.05490 0.94541 1.23922 0.95472 0.92504 1.01318 1.21770 0.90504 1.03114 0.83617 1.88177 1.46736 1.40716 1.55738 1.22865 0.91656 0.90057 0.97585 1.21161 0.98452 1.04826 0.90860 1.21781 1.01387 0.91808 0.92561 1.20754 0.84308 0.82444 0.89625 1.90486 1.43355 1.45985 1.69737 1.41958 1.47757 1.17826 1.13934 1.19671 1.31351 1.03803 0.90998 0.90356 1.26036 0.96737 0.94858 1.03845 1.69678 1.37650 1.09367 1.39625 0.84884 0.78174 0.78220 0.77144 1.19821 1.19768 1.19461 0.91402 0.94551 0.91432 0.90368 0.93854 0.92795 0.93185 0.91659 0.87728 0.92876 0.92993 0.74399 0.86259 0.88835 0.85558 0.85913 0.91602 0.88600 0.87531 0.88164 0.90975 0.77163 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.91 71.98 0.71 -2.57 16 2 C -0.11 -2.78 5.98 30.60 0.18 -2.60 16 3 C 0.06 1.82 4.46 86.30 0.39 2.20 16 4 N -0.53 -16.51 4.10 -900.78 -3.70 -20.20 16 5 C 0.05 1.12 4.92 86.30 0.42 1.55 16 6 C 0.13 3.14 5.70 86.38 0.49 3.63 16 7 N -0.70 -13.37 5.50 -466.73 -2.57 -15.93 16 8 C 0.54 13.26 7.73 86.57 0.67 13.93 16 9 O -0.59 -20.63 16.06 -4.07 -0.07 -20.70 16 10 C -0.18 -3.08 5.86 -18.58 -0.11 -3.19 16 11 C -0.11 -1.87 9.58 24.59 0.24 -1.64 16 12 C 0.09 0.95 7.04 71.10 0.50 1.45 16 13 O -0.39 -5.27 10.85 -148.98 -1.62 -6.89 16 14 C 0.05 0.45 6.87 72.01 0.50 0.94 16 15 C -0.12 -1.07 5.29 29.79 0.16 -0.91 16 16 C 0.06 1.94 5.27 85.56 0.45 2.39 16 17 C 0.44 21.30 7.29 87.66 0.64 21.94 16 18 O -0.61 -33.87 14.12 -3.04 -0.04 -33.91 16 19 N -0.58 -30.22 5.29 -306.98 -1.62 -31.85 16 20 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 23 N -0.92 -50.70 13.05 21.66 0.28 -50.42 16 24 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.57 6.91 -2.39 -0.02 1.56 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 2.12 5.85 -2.38 -0.01 2.10 16 34 H 0.05 1.21 7.99 -2.39 -0.02 1.20 16 35 H 0.07 1.08 8.00 -2.38 -0.02 1.06 16 36 H 0.10 1.70 6.58 -2.39 -0.02 1.68 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.05 1.48 6.95 -2.39 -0.02 1.47 16 39 H 0.42 4.50 6.78 -92.71 -0.63 3.87 16 40 H 0.12 2.39 7.29 -2.91 -0.02 2.37 16 41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 45 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.11 0.52 7.31 -2.38 -0.02 0.50 16 47 H 0.10 3.27 6.71 -2.39 -0.02 3.26 16 48 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 49 H 0.39 19.73 7.90 -92.71 -0.73 18.99 16 50 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -79.00 404.16 -1.18 -80.18 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -0.40 Total: 35.23 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 6.52 Total: 18.58 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -7.60 Total: -118.40 kcal Atomic # 8 Polarization: -59.77 SS G_CDS: -1.72 Total: -61.50 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -79.00 -1.18 -80.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493286470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.000 kcal (2) G-P(sol) polarization free energy of solvation -78.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds