Wall clock time and date at job start Sat Apr 11 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47238 * 2 1 4 4 N 1.46896 * 109.47476 * 179.97438 * 3 2 1 5 5 C 1.46891 * 111.00032 * 179.97438 * 4 3 2 6 6 C 1.50709 * 109.47286 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99614 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99820 * 180.02562 * 6 5 4 9 9 C 1.37102 * 119.99416 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00368 * 359.97438 * 9 8 6 11 11 C 1.38946 * 119.99926 * 179.97438 * 9 8 6 12 12 N 1.31418 * 119.99881 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00058 * 179.72135 * 11 9 8 14 14 H 1.48496 * 109.46849 * 60.00471 * 13 11 9 15 15 H 1.48505 * 109.46946 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47275 * 300.00019 * 13 11 9 17 17 N 1.46499 * 109.47626 * 119.99959 * 2 1 3 18 18 C 1.34773 * 119.99560 * 295.93237 * 17 2 1 19 19 O 1.21275 * 120.00742 * 4.87346 * 18 17 2 20 20 C 1.50703 * 119.99500 * 184.87284 * 18 17 2 21 21 H 1.09003 * 110.27829 * 305.62985 * 20 18 17 22 22 C 1.54941 * 110.31324 * 67.83445 * 20 18 17 23 23 C 1.55305 * 100.94511 * 155.35834 * 22 20 18 24 24 C 1.54378 * 102.25168 * 325.86324 * 23 22 20 25 25 O 1.43241 * 107.59060 * 21.36251 * 24 23 22 26 26 C 1.52999 * 109.47323 * 240.00300 * 2 1 3 27 27 C 1.53005 * 117.49854 * 13.85970 * 26 2 1 28 28 C 1.53008 * 117.49885 * 305.20388 * 26 2 1 29 29 H 1.08997 * 109.47142 * 60.00275 * 1 2 3 30 30 H 1.09001 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47175 * 299.99897 * 1 2 3 32 32 H 1.09001 * 109.46953 * 59.99967 * 3 2 1 33 33 H 1.09001 * 109.46804 * 300.00404 * 3 2 1 34 34 H 1.00906 * 110.99852 * 56.04636 * 4 3 2 35 35 H 1.09000 * 109.47426 * 60.00388 * 5 4 3 36 36 H 1.09003 * 109.47538 * 300.00082 * 5 4 3 37 37 H 0.96995 * 120.00242 * 359.97438 * 8 6 5 38 38 H 0.96995 * 119.99850 * 179.97438 * 12 11 9 39 39 H 0.96998 * 119.99767 * 115.92183 * 17 2 1 40 40 H 1.09000 * 111.12283 * 273.28188 * 22 20 18 41 41 H 1.09003 * 111.12621 * 37.43433 * 22 20 18 42 42 H 1.09002 * 110.84642 * 207.67435 * 23 22 20 43 43 H 1.08995 * 110.84857 * 84.06207 * 23 22 20 44 44 H 1.08996 * 109.83063 * 261.84623 * 24 23 22 45 45 H 1.08999 * 109.90366 * 140.91321 * 24 23 22 46 46 H 1.09000 * 115.55194 * 159.53286 * 26 2 1 47 47 H 1.08997 * 117.49886 * 0.02562 * 27 26 2 48 48 H 1.08998 * 117.49686 * 145.01862 * 27 26 2 49 49 H 1.08998 * 117.49888 * 214.98293 * 28 26 2 50 50 H 1.08997 * 117.49272 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0353 2.8140 0.0000 6 6 5.5419 2.7739 0.0000 7 8 6.1201 1.7077 0.0010 8 7 6.2465 3.9227 0.0001 9 6 7.6171 3.8861 -0.0004 10 1 8.1320 2.9368 -0.0004 11 6 8.3436 5.0705 -0.0010 12 7 7.7171 6.2257 -0.0015 13 14 10.2110 5.0207 0.0062 14 1 10.6916 4.3045 -1.2026 15 1 10.7431 6.4071 0.0050 16 1 10.6826 4.3111 1.2224 17 7 2.0184 -0.6906 1.1961 18 6 1.7618 -0.1842 2.4185 19 8 1.0529 0.7930 2.5336 20 6 2.3560 -0.8324 3.6424 21 1 2.1043 -1.8927 3.6682 22 6 3.8935 -0.6419 3.6592 23 6 4.1888 -0.7609 5.1793 24 6 2.9304 -0.1252 5.8082 25 8 1.8840 -0.1790 4.8315 26 6 2.0400 -0.7212 -1.2493 27 6 1.0332 -0.9922 -2.3691 28 6 1.5379 -2.1450 -1.4976 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.8709 0.9164 -0.7806 35 1 3.6855 3.3379 0.8896 36 1 3.6862 3.3369 -0.8904 37 1 5.7841 4.7753 -0.0003 38 1 8.2243 7.0525 -0.0014 39 1 2.5263 -1.5123 1.1083 40 1 4.3934 -1.4319 3.0988 41 1 4.1717 0.3418 3.2808 42 1 5.0828 -0.1972 5.4461 43 1 4.2850 -1.8055 5.4751 44 1 3.1341 0.9118 6.0752 45 1 2.6363 -0.6847 6.6962 46 1 3.0653 -0.4914 -1.5391 47 1 0.0076 -0.6564 -2.2159 48 1 1.3963 -0.9411 -3.3955 49 1 2.2328 -2.8518 -1.9510 50 1 0.8438 -2.5677 -0.7711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568012863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:47 Heat of formation + Delta-G solvation = -84.650287 kcal Electronic energy + Delta-G solvation = -30967.901366 eV Core-core repulsion = 26803.153963 eV Total energy + Delta-G solvation = -4164.747403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66536 -39.35155 -38.16326 -37.63101 -35.23719 -34.03639 -33.62104 -32.23814 -31.25159 -31.02641 -29.17831 -27.61221 -25.26261 -24.29343 -23.30128 -22.95580 -22.52128 -21.75059 -20.24784 -19.31307 -19.06705 -17.87342 -17.78065 -16.91308 -16.42578 -16.08241 -15.60423 -15.34114 -15.12773 -14.92116 -14.54908 -14.41478 -14.40594 -14.01414 -13.53683 -13.42131 -13.31617 -13.13839 -12.88411 -12.59495 -12.32549 -12.01944 -11.94570 -11.83051 -11.59938 -11.51094 -11.44757 -11.40065 -11.30612 -11.12738 -11.00334 -10.94108 -10.55785 -10.44363 -10.30224 -10.20544 -9.88903 -9.48831 -9.22447 -8.93030 -8.40352 -7.98487 -7.92379 -6.40246 -3.81276 2.73169 2.84916 3.19926 3.25681 3.29695 3.61567 3.93500 3.97044 4.12088 4.32611 4.36158 4.41137 4.58259 4.69571 4.75843 4.81797 4.89195 4.98292 5.00136 5.15146 5.18712 5.20960 5.28244 5.40235 5.41548 5.58467 5.61582 5.61905 5.64674 5.68775 5.72197 5.74871 5.84238 5.89790 5.91074 5.95955 6.05607 6.11276 6.16841 6.23432 6.30781 6.59702 6.81200 7.28114 7.55590 7.63434 7.75584 8.07475 8.37541 8.62950 9.18843 9.56346 10.07711 10.77491 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.003346 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.478491 B = 8365.325749 C =10316.649031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.218 3.782 3 C 0.046 3.954 4 N -0.660 5.660 5 C 0.051 3.949 6 C 0.443 3.557 7 O -0.585 6.585 8 N -0.564 5.564 9 C -0.300 4.300 10 H 0.102 0.898 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.274 1.274 17 N -0.703 5.703 18 C 0.526 3.474 19 O -0.523 6.523 20 C 0.065 3.935 21 H 0.089 0.911 22 C -0.140 4.140 23 C -0.155 4.155 24 C 0.049 3.951 25 O -0.357 6.357 26 C -0.164 4.164 27 C -0.173 4.173 28 C -0.174 4.174 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.033 0.967 34 H 0.342 0.658 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.399 0.601 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.102 0.898 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 -15.859 2.352 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.132 3.868 3 C -0.084 4.084 4 N -0.293 5.293 5 C -0.082 4.082 6 C 0.229 3.771 7 O -0.469 6.469 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.199 1.199 17 N -0.355 5.355 18 C 0.311 3.689 19 O -0.398 6.398 20 C 0.004 3.996 21 H 0.106 0.894 22 C -0.178 4.178 23 C -0.192 4.192 24 C -0.027 4.027 25 O -0.275 6.275 26 C -0.183 4.183 27 C -0.210 4.210 28 C -0.211 4.211 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.163 0.837 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.233 0.767 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.133 0.867 47 H 0.120 0.880 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.950 -15.617 3.171 21.179 hybrid contribution 1.096 0.458 -1.002 1.554 sum -12.854 -15.159 2.169 19.993 Atomic orbital electron populations 1.22327 0.94337 1.02227 1.03604 1.19688 0.93121 0.91409 0.82592 1.22414 0.88705 0.95222 1.02105 1.60066 1.05280 1.13126 1.50830 1.21659 0.94911 0.90483 1.01138 1.19812 0.88074 0.84979 0.84282 1.90494 1.71228 1.29633 1.55584 1.41865 1.06995 1.06832 1.64358 1.19634 0.81109 0.94443 1.47741 0.88044 1.25258 1.00642 0.94656 0.97358 1.69610 1.36674 0.97495 1.50509 0.85929 0.82243 0.77078 0.79016 1.19950 1.20973 1.19921 1.45683 1.57197 1.28075 1.04526 1.20196 0.80441 0.84249 0.83983 1.90627 1.36879 1.26100 1.86187 1.22813 0.94604 0.96503 0.85717 0.89370 1.23213 0.92618 1.05321 0.96672 1.23127 0.99059 1.01904 0.95160 1.23189 0.86741 1.01208 0.91580 1.88499 1.35510 1.79976 1.23518 1.22557 1.00008 0.98910 0.96784 1.23129 0.99491 1.02684 0.95694 1.22955 1.03791 0.91045 1.03336 0.91551 0.92390 0.90175 0.88507 0.94905 0.83715 0.89744 0.94093 0.77463 0.91826 0.76726 0.89083 0.88640 0.89431 0.90471 0.90999 0.91281 0.86719 0.87957 0.88619 0.88584 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 7.12 37.16 0.26 -1.49 16 2 C 0.22 2.45 0.65 -131.82 -0.09 2.36 16 3 C 0.05 0.64 4.40 -3.82 -0.02 0.63 16 4 N -0.66 -10.78 5.94 -115.06 -0.68 -11.46 16 5 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 6 C 0.44 10.53 7.82 -10.98 -0.09 10.45 16 7 O -0.58 -15.59 15.78 5.55 0.09 -15.50 16 8 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 9 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 10 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 13 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 17 N -0.70 -7.86 4.90 -47.61 -0.23 -8.09 16 18 C 0.53 7.26 6.58 -10.99 -0.07 7.19 16 19 O -0.52 -9.12 12.79 -13.76 -0.18 -9.30 16 20 C 0.06 0.77 3.87 -26.86 -0.10 0.67 16 21 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 22 C -0.14 -1.61 6.56 -24.48 -0.16 -1.77 16 23 C -0.15 -1.50 7.02 -24.79 -0.17 -1.67 16 24 C 0.05 0.54 7.79 37.88 0.30 0.84 16 25 O -0.36 -5.08 10.61 -54.56 -0.58 -5.66 16 26 C -0.16 -1.58 4.94 -90.61 -0.45 -2.02 16 27 C -0.17 -1.39 9.66 -26.69 -0.26 -1.65 16 28 C -0.17 -1.33 9.77 -26.69 -0.26 -1.59 16 29 H 0.07 0.62 6.73 -51.93 -0.35 0.27 16 30 H 0.06 0.54 6.95 -51.93 -0.36 0.17 16 31 H 0.08 1.04 6.31 -51.93 -0.33 0.71 16 32 H 0.10 1.60 6.05 -51.93 -0.31 1.29 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.34 5.60 6.34 -39.29 -0.25 5.36 16 35 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.40 3.64 8.41 -40.82 -0.34 3.29 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.11 1.27 6.27 -51.93 -0.33 0.94 16 47 H 0.10 0.78 5.89 -51.93 -0.31 0.47 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.10 0.69 7.28 -51.93 -0.38 0.31 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -33.40 397.95 -9.18 -42.57 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -7.86 Total: 19.13 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.38 Total: 4.83 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.25 Total: -58.15 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.67 Total: -30.46 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.40 -9.18 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568012863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.077 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds