Wall clock time and date at job start Sat Apr 11 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47238 * 2 1 4 4 N 1.46896 * 109.47476 * 179.97438 * 3 2 1 5 5 C 1.46891 * 111.00032 * 179.97438 * 4 3 2 6 6 C 1.50709 * 109.47286 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99614 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99820 * 180.02562 * 6 5 4 9 9 C 1.37102 * 119.99416 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00368 * 359.97438 * 9 8 6 11 11 C 1.38946 * 119.99926 * 179.97438 * 9 8 6 12 12 N 1.31418 * 119.99881 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00058 * 179.72135 * 11 9 8 14 14 H 1.48496 * 109.46849 * 60.00471 * 13 11 9 15 15 H 1.48505 * 109.46946 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47275 * 300.00019 * 13 11 9 17 17 N 1.46499 * 109.47626 * 119.99959 * 2 1 3 18 18 C 1.34773 * 119.99560 * 295.93237 * 17 2 1 19 19 O 1.21275 * 120.00742 * 4.87346 * 18 17 2 20 20 C 1.50703 * 119.99500 * 184.87284 * 18 17 2 21 21 H 1.09003 * 110.27829 * 305.62985 * 20 18 17 22 22 C 1.54941 * 110.31324 * 67.83445 * 20 18 17 23 23 C 1.55305 * 100.94511 * 155.35834 * 22 20 18 24 24 C 1.54378 * 102.25168 * 325.86324 * 23 22 20 25 25 O 1.43241 * 107.59060 * 21.36251 * 24 23 22 26 26 C 1.52999 * 109.47323 * 240.00300 * 2 1 3 27 27 C 1.53005 * 117.49854 * 13.85970 * 26 2 1 28 28 C 1.53008 * 117.49885 * 305.20388 * 26 2 1 29 29 H 1.08997 * 109.47142 * 60.00275 * 1 2 3 30 30 H 1.09001 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47175 * 299.99897 * 1 2 3 32 32 H 1.09001 * 109.46953 * 59.99967 * 3 2 1 33 33 H 1.09001 * 109.46804 * 300.00404 * 3 2 1 34 34 H 1.00906 * 110.99852 * 56.04636 * 4 3 2 35 35 H 1.09000 * 109.47426 * 60.00388 * 5 4 3 36 36 H 1.09003 * 109.47538 * 300.00082 * 5 4 3 37 37 H 0.96995 * 120.00242 * 359.97438 * 8 6 5 38 38 H 0.96995 * 119.99850 * 179.97438 * 12 11 9 39 39 H 0.96998 * 119.99767 * 115.92183 * 17 2 1 40 40 H 1.09000 * 111.12283 * 273.28188 * 22 20 18 41 41 H 1.09003 * 111.12621 * 37.43433 * 22 20 18 42 42 H 1.09002 * 110.84642 * 207.67435 * 23 22 20 43 43 H 1.08995 * 110.84857 * 84.06207 * 23 22 20 44 44 H 1.08996 * 109.83063 * 261.84623 * 24 23 22 45 45 H 1.08999 * 109.90366 * 140.91321 * 24 23 22 46 46 H 1.09000 * 115.55194 * 159.53286 * 26 2 1 47 47 H 1.08997 * 117.49886 * 0.02562 * 27 26 2 48 48 H 1.08998 * 117.49686 * 145.01862 * 27 26 2 49 49 H 1.08998 * 117.49888 * 214.98293 * 28 26 2 50 50 H 1.08997 * 117.49272 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0353 2.8140 0.0000 6 6 5.5419 2.7739 0.0000 7 8 6.1201 1.7077 0.0010 8 7 6.2465 3.9227 0.0001 9 6 7.6171 3.8861 -0.0004 10 1 8.1320 2.9368 -0.0004 11 6 8.3436 5.0705 -0.0010 12 7 7.7171 6.2257 -0.0015 13 14 10.2110 5.0207 0.0062 14 1 10.6916 4.3045 -1.2026 15 1 10.7431 6.4071 0.0050 16 1 10.6826 4.3111 1.2224 17 7 2.0184 -0.6906 1.1961 18 6 1.7618 -0.1842 2.4185 19 8 1.0529 0.7930 2.5336 20 6 2.3560 -0.8324 3.6424 21 1 2.1043 -1.8927 3.6682 22 6 3.8935 -0.6419 3.6592 23 6 4.1888 -0.7609 5.1793 24 6 2.9304 -0.1252 5.8082 25 8 1.8840 -0.1790 4.8315 26 6 2.0400 -0.7212 -1.2493 27 6 1.0332 -0.9922 -2.3691 28 6 1.5379 -2.1450 -1.4976 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.8709 0.9164 -0.7806 35 1 3.6855 3.3379 0.8896 36 1 3.6862 3.3369 -0.8904 37 1 5.7841 4.7753 -0.0003 38 1 8.2243 7.0525 -0.0014 39 1 2.5263 -1.5123 1.1083 40 1 4.3934 -1.4319 3.0988 41 1 4.1717 0.3418 3.2808 42 1 5.0828 -0.1972 5.4461 43 1 4.2850 -1.8055 5.4751 44 1 3.1341 0.9118 6.0752 45 1 2.6363 -0.6847 6.6962 46 1 3.0653 -0.4914 -1.5391 47 1 0.0076 -0.6564 -2.2159 48 1 1.3963 -0.9411 -3.3955 49 1 2.2328 -2.8518 -1.9510 50 1 0.8438 -2.5677 -0.7711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568012863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:46 Heat of formation + Delta-G solvation = -109.547322 kcal Electronic energy + Delta-G solvation = -30968.980982 eV Core-core repulsion = 26803.153963 eV Total energy + Delta-G solvation = -4165.827019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65580 -40.35535 -39.98040 -38.60199 -36.56264 -35.81163 -34.89433 -33.29488 -33.15803 -32.05748 -30.11017 -29.04500 -26.85268 -25.50944 -24.47459 -24.06616 -23.15088 -22.60646 -21.23391 -21.08074 -20.12826 -19.91165 -18.71849 -18.02991 -17.73936 -17.14812 -16.93744 -16.48431 -16.40291 -16.21354 -15.99373 -15.73506 -15.66454 -15.37207 -14.82628 -14.61847 -14.51999 -14.22172 -14.15249 -13.72354 -13.47752 -13.46053 -13.15730 -13.06464 -12.91852 -12.79091 -12.73579 -12.45477 -12.39843 -12.27992 -12.13034 -12.04573 -12.01402 -11.81826 -11.50552 -11.26087 -11.05656 -10.85195 -10.38840 -10.24092 -10.03217 -9.91477 -9.33031 -8.47186 -5.96622 1.39143 1.40856 1.52265 1.68394 1.94409 2.02629 2.27937 2.84043 2.92876 3.11767 3.19635 3.46025 3.52221 3.58246 3.70048 3.87190 3.92770 4.07292 4.12766 4.14664 4.15726 4.26138 4.28243 4.32539 4.43016 4.51333 4.56815 4.59487 4.74082 4.76098 4.80638 4.83286 4.89570 4.91519 4.98179 4.98975 5.04338 5.20409 5.22846 5.32838 5.39131 5.40336 5.63044 5.83910 5.91770 6.05488 6.43807 6.57801 6.70629 7.10417 7.37641 7.53735 8.07838 8.70228 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.003346 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.478491 B = 8365.325749 C =10316.649031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.221 3.779 3 C 0.050 3.950 4 N -0.663 5.663 5 C 0.064 3.936 6 C 0.443 3.557 7 O -0.615 6.615 8 N -0.574 5.574 9 C -0.333 4.333 10 H 0.082 0.918 11 C -0.014 4.014 12 N -0.923 5.923 13 Si 0.995 3.005 14 H -0.269 1.269 15 H -0.272 1.272 16 H -0.271 1.271 17 N -0.690 5.690 18 C 0.518 3.482 19 O -0.567 6.567 20 C 0.065 3.935 21 H 0.125 0.875 22 C -0.138 4.138 23 C -0.146 4.146 24 C 0.043 3.957 25 O -0.389 6.389 26 C -0.178 4.178 27 C -0.167 4.167 28 C -0.157 4.157 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.344 0.656 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.394 0.606 38 H 0.277 0.723 39 H 0.411 0.589 40 H 0.111 0.889 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.784 -17.783 1.858 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.135 3.865 3 C -0.080 4.080 4 N -0.297 5.297 5 C -0.069 4.069 6 C 0.230 3.770 7 O -0.501 6.501 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.100 0.900 11 C -0.214 4.214 12 N -0.564 5.564 13 Si 0.818 3.182 14 H -0.194 1.194 15 H -0.196 1.196 16 H -0.196 1.196 17 N -0.342 5.342 18 C 0.304 3.696 19 O -0.445 6.445 20 C 0.004 3.996 21 H 0.142 0.858 22 C -0.176 4.176 23 C -0.184 4.184 24 C -0.033 4.033 25 O -0.308 6.308 26 C -0.197 4.197 27 C -0.204 4.204 28 C -0.194 4.194 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.165 0.835 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.228 0.772 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.130 0.870 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.128 0.872 48 H 0.120 0.880 49 H 0.124 0.876 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.973 -17.561 2.661 22.599 hybrid contribution 1.055 1.053 -0.859 1.720 sum -12.918 -16.508 1.802 21.039 Atomic orbital electron populations 1.22252 0.93435 1.03123 1.02908 1.19660 0.93660 0.89854 0.83370 1.22383 0.86964 0.97428 1.01220 1.60024 1.06799 1.11723 1.51105 1.21482 0.91040 0.92240 1.02091 1.20648 0.90083 0.83959 0.82315 1.90461 1.72555 1.30596 1.56499 1.41944 1.06624 1.07462 1.65063 1.19655 0.82375 0.94244 1.50002 0.90000 1.26087 1.05137 0.93932 0.96205 1.69685 1.38394 0.97987 1.50293 0.84965 0.76544 0.77631 0.79058 1.19427 1.19627 1.19628 1.45642 1.56487 1.28153 1.03952 1.20683 0.79926 0.83810 0.85181 1.90610 1.38978 1.28045 1.86899 1.23003 0.94374 0.97843 0.84341 0.85783 1.23147 0.92670 1.03521 0.98303 1.23137 0.98237 1.03610 0.93381 1.23359 0.86897 1.01145 0.91944 1.88460 1.37093 1.80658 1.24621 1.22349 0.99697 1.00924 0.96710 1.23223 0.99262 1.02389 0.95511 1.23035 1.03422 0.90088 1.02888 0.90215 0.90627 0.92880 0.91164 0.93823 0.83520 0.89672 0.92023 0.77244 0.91317 0.75333 0.87036 0.92980 0.89591 0.87401 0.92361 0.88801 0.88202 0.87233 0.88030 0.87623 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 7.12 71.98 0.51 -2.65 16 2 C 0.22 4.78 0.65 3.60 0.00 4.78 16 3 C 0.05 1.41 4.40 86.31 0.38 1.79 16 4 N -0.66 -21.91 5.94 -517.93 -3.08 -24.99 16 5 C 0.06 2.42 6.17 85.56 0.53 2.94 16 6 C 0.44 21.56 7.82 87.66 0.69 22.25 16 7 O -0.61 -33.58 15.78 -3.05 -0.05 -33.63 16 8 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 9 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 10 H 0.08 4.93 7.16 -2.91 -0.02 4.90 16 11 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 12 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 13 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 14 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 15 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 17 N -0.69 -14.98 4.90 -422.93 -2.07 -17.05 16 18 C 0.52 14.42 6.58 87.66 0.58 15.00 16 19 O -0.57 -20.61 12.79 15.46 0.20 -20.41 16 20 C 0.06 1.51 3.87 30.51 0.12 1.63 16 21 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 22 C -0.14 -3.12 6.56 32.05 0.21 -2.91 16 23 C -0.15 -2.64 7.02 31.85 0.22 -2.41 16 24 C 0.04 0.91 7.79 72.45 0.56 1.48 16 25 O -0.39 -11.11 10.61 -130.50 -1.38 -12.49 16 26 C -0.18 -3.13 4.94 -10.79 -0.05 -3.18 16 27 C -0.17 -2.25 9.66 30.62 0.30 -1.96 16 28 C -0.16 -1.95 9.77 30.62 0.30 -1.65 16 29 H 0.08 1.35 6.73 -2.39 -0.02 1.33 16 30 H 0.07 1.23 6.95 -2.39 -0.02 1.21 16 31 H 0.05 1.39 6.31 -2.39 -0.02 1.37 16 32 H 0.07 2.42 6.05 -2.39 -0.01 2.40 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.34 11.29 6.34 -89.69 -0.57 10.73 16 35 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.39 20.09 7.90 -92.71 -0.73 19.36 16 38 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.41 6.85 8.41 -92.71 -0.78 6.07 16 40 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 1.63 8.05 -2.39 -0.02 1.61 16 42 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.10 2.11 6.27 -2.39 -0.01 2.09 16 47 H 0.11 1.34 5.89 -2.39 -0.01 1.33 16 48 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.10 1.14 7.28 -2.39 -0.02 1.12 16 Total: -1.00 -74.62 397.95 -1.17 -75.78 By element: Atomic # 1 Polarization: 54.62 SS G_CDS: -1.09 Total: 53.52 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 5.62 Total: 16.55 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -6.49 Total: -124.38 kcal Atomic # 8 Polarization: -65.30 SS G_CDS: -1.23 Total: -66.53 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -74.62 -1.17 -75.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568012863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.766 kcal (2) G-P(sol) polarization free energy of solvation -74.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds