Wall clock time and date at job start Sat Apr 11 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47133 * 2 1 4 4 N 1.46900 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.46897 * 111.00062 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47446 * 180.02562 * 5 4 3 7 7 O 1.21293 * 119.99801 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00171 * 180.02562 * 6 5 4 9 9 C 1.37096 * 119.99891 * 180.02562 * 8 6 5 10 10 H 1.07999 * 119.99719 * 359.97438 * 9 8 6 11 11 C 1.38946 * 120.00148 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00470 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 119.99797 * 359.72482 * 11 9 8 14 14 H 1.48501 * 109.47491 * 89.99954 * 13 11 9 15 15 H 1.48506 * 109.47447 * 210.00100 * 13 11 9 16 16 H 1.48502 * 109.47100 * 329.99854 * 13 11 9 17 17 N 1.46499 * 109.47509 * 120.00491 * 2 1 3 18 18 C 1.34776 * 119.99630 * 295.86686 * 17 2 1 19 19 O 1.21276 * 120.00603 * 4.94927 * 18 17 2 20 20 C 1.50703 * 119.99714 * 184.94811 * 18 17 2 21 21 H 1.08998 * 109.82130 * 55.56634 * 20 18 17 22 22 C 1.54384 * 109.82989 * 294.58780 * 20 18 17 23 23 C 1.55309 * 102.25095 * 219.12827 * 22 20 18 24 24 C 1.54944 * 100.94052 * 34.13376 * 23 22 20 25 25 O 1.43239 * 109.83126 * 176.45654 * 20 18 17 26 26 C 1.53010 * 109.46923 * 240.00487 * 2 1 3 27 27 C 1.52998 * 117.49398 * 12.71398 * 26 2 1 28 28 C 1.52994 * 117.49768 * 304.09190 * 26 2 1 29 29 H 1.08996 * 109.47537 * 59.99440 * 1 2 3 30 30 H 1.08999 * 109.46860 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46615 * 299.99344 * 1 2 3 32 32 H 1.09003 * 109.46834 * 60.00790 * 3 2 1 33 33 H 1.08996 * 109.47366 * 300.00665 * 3 2 1 34 34 H 1.00899 * 110.99835 * 303.95801 * 4 3 2 35 35 H 1.09007 * 109.47037 * 60.00152 * 5 4 3 36 36 H 1.09002 * 109.47498 * 300.00576 * 5 4 3 37 37 H 0.96999 * 120.00171 * 359.97438 * 8 6 5 38 38 H 0.96996 * 120.00483 * 180.02562 * 12 11 9 39 39 H 0.96995 * 119.99666 * 115.86494 * 17 2 1 40 40 H 1.08996 * 110.85033 * 337.31905 * 22 20 18 41 41 H 1.08998 * 110.84912 * 100.94154 * 22 20 18 42 42 H 1.08995 * 111.12281 * 276.21203 * 23 22 20 43 43 H 1.09005 * 111.15806 * 152.06986 * 23 22 20 44 44 H 1.09003 * 110.30687 * 204.63801 * 24 23 22 45 45 H 1.09003 * 110.30858 * 82.46850 * 24 23 22 46 46 H 1.09001 * 115.54501 * 158.41856 * 26 2 1 47 47 H 1.08993 * 117.50199 * 0.02562 * 27 26 2 48 48 H 1.09004 * 117.49581 * 145.02482 * 27 26 2 49 49 H 1.08996 * 117.49668 * 214.97812 * 28 26 2 50 50 H 1.09004 * 117.49787 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0355 2.8139 0.0000 6 6 5.5419 2.7738 -0.0013 7 8 6.1202 1.7075 -0.0021 8 7 6.2467 3.9226 -0.0005 9 6 7.6172 3.8860 -0.0022 10 1 8.1320 2.9366 -0.0038 11 6 8.3438 5.0703 -0.0019 12 7 9.6575 5.0353 -0.0031 13 14 7.4533 6.7124 -0.0070 14 1 7.2133 7.1497 1.3917 15 1 8.2852 7.7246 -0.7062 16 1 6.1535 6.5684 -0.7106 17 7 2.0184 -0.6907 1.1961 18 6 1.7630 -0.1837 2.4184 19 8 1.0539 0.7933 2.5337 20 6 2.3585 -0.8311 3.6421 21 1 3.4424 -0.8852 3.5412 22 6 1.7757 -2.2496 3.8203 23 6 1.5971 -2.3414 5.3603 24 6 1.2283 -0.8757 5.7015 25 8 2.0162 -0.0730 4.8082 26 6 2.0400 -0.7212 -1.2494 27 6 1.0272 -1.0160 -2.3576 28 6 1.5582 -2.1542 -1.4839 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6768 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.8709 0.9162 0.7805 35 1 3.6864 3.3367 0.8905 36 1 3.6856 3.3379 -0.8895 37 1 5.7843 4.7753 0.0005 38 1 10.1647 5.8621 -0.0025 39 1 2.5256 -1.5128 1.1082 40 1 0.8158 -2.3412 3.3123 41 1 2.4773 -3.0046 3.4655 42 1 2.5269 -2.6360 5.8468 43 1 0.7867 -3.0217 5.6225 44 1 1.4849 -0.6523 6.7371 45 1 0.1661 -0.7027 5.5283 46 1 3.0589 -0.4771 -1.5501 47 1 -0.0022 -0.6959 -2.1969 48 1 1.3797 -0.9660 -3.3879 49 1 2.2600 -2.8529 -1.9393 50 1 0.8783 -2.5834 -0.7479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568012866.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:59 Heat of formation + Delta-G solvation = -78.848372 kcal Electronic energy + Delta-G solvation = -30766.500631 eV Core-core repulsion = 26602.004818 eV Total energy + Delta-G solvation = -4164.495813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.90870 -39.47970 -38.32403 -37.69361 -35.33767 -34.10745 -33.69319 -32.49406 -31.62417 -31.23716 -29.37649 -27.73718 -25.34425 -24.32797 -23.39765 -22.75253 -22.40027 -22.13321 -20.33315 -19.51796 -19.20973 -18.28001 -17.93316 -17.08202 -16.42514 -16.15889 -15.77058 -15.48929 -15.27864 -15.20320 -14.79417 -14.58697 -14.32135 -13.96896 -13.79764 -13.46228 -13.28998 -13.13860 -12.91114 -12.66092 -12.46681 -12.28191 -12.16393 -12.04584 -11.77705 -11.68514 -11.63950 -11.47852 -11.41796 -11.28832 -11.21792 -11.09373 -10.55419 -10.49168 -10.33723 -10.24148 -9.93892 -9.52738 -9.32667 -9.20439 -8.49053 -8.14303 -7.99308 -6.27460 -3.78501 2.45499 2.78218 3.07298 3.11396 3.18778 3.57257 3.78465 3.80188 4.02581 4.13402 4.17057 4.35384 4.43853 4.49064 4.68989 4.75804 4.78871 4.86341 4.93423 5.01692 5.06119 5.16240 5.23775 5.27159 5.33138 5.35849 5.40165 5.45498 5.47154 5.61031 5.66700 5.67074 5.68190 5.73025 5.79321 5.89562 5.94927 5.97437 6.02042 6.10116 6.34875 6.45508 6.61633 7.17162 7.42538 7.62535 7.66185 8.13431 8.18552 8.64309 8.98900 9.46965 9.87704 10.85746 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010359 B = 0.003071 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.299889 B = 9114.696842 C =10734.900597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.215 3.785 3 C 0.045 3.955 4 N -0.661 5.661 5 C 0.047 3.953 6 C 0.453 3.547 7 O -0.566 6.566 8 N -0.591 5.591 9 C -0.304 4.304 10 H 0.119 0.881 11 C 0.041 3.959 12 N -0.883 5.883 13 Si 0.879 3.121 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.269 1.269 17 N -0.717 5.717 18 C 0.502 3.498 19 O -0.519 6.519 20 C 0.062 3.938 21 H 0.110 0.890 22 C -0.145 4.145 23 C -0.155 4.155 24 C 0.047 3.953 25 O -0.350 6.350 26 C -0.148 4.148 27 C -0.174 4.174 28 C -0.183 4.183 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.346 0.654 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.402 0.598 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.130 0.870 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.182 -15.607 4.529 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.129 3.871 3 C -0.085 4.085 4 N -0.294 5.294 5 C -0.086 4.086 6 C 0.239 3.761 7 O -0.448 6.448 8 N -0.231 5.231 9 C -0.432 4.432 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.523 5.523 13 Si 0.705 3.295 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.194 1.194 17 N -0.371 5.371 18 C 0.288 3.712 19 O -0.394 6.394 20 C 0.000 4.000 21 H 0.128 0.872 22 C -0.183 4.183 23 C -0.192 4.192 24 C -0.029 4.029 25 O -0.267 6.267 26 C -0.166 4.166 27 C -0.212 4.212 28 C -0.220 4.220 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.203 0.797 38 H 0.083 0.917 39 H 0.236 0.764 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.148 0.852 47 H 0.117 0.883 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.968 -15.326 3.987 27.080 hybrid contribution -0.463 1.143 0.727 1.431 sum -22.431 -14.183 4.714 26.954 Atomic orbital electron populations 1.22312 0.94453 1.02127 1.03481 1.19782 0.93052 0.91478 0.82776 1.22363 0.88787 0.95206 1.02155 1.60096 1.05418 1.12861 1.50978 1.21703 0.94684 0.90923 1.01286 1.19714 0.88014 0.84703 0.83710 1.90541 1.71137 1.29310 1.53818 1.42208 1.07447 1.06270 1.67160 1.19423 0.79118 0.96747 1.47945 0.86317 1.25027 0.95422 0.98024 0.97679 1.69619 1.04797 1.28285 1.49604 0.86680 0.79679 0.84196 0.78912 1.19637 1.20195 1.19443 1.46105 1.57462 1.28519 1.04970 1.20968 0.81036 0.84647 0.84595 1.90657 1.36534 1.26006 1.86212 1.22719 1.00693 0.90764 0.85805 0.87202 1.23114 1.02513 0.95312 0.97380 1.23284 1.03205 0.97688 0.95066 1.23467 0.95744 0.89145 0.94553 1.88563 1.71534 1.37893 1.28741 1.22543 1.01102 0.97042 0.95916 1.23081 0.99189 1.02828 0.96063 1.22950 1.03975 0.91540 1.03496 0.91359 0.92455 0.90566 0.92645 0.90390 0.83479 0.93828 0.89529 0.79690 0.91661 0.76362 0.90071 0.88834 0.89804 0.89576 0.89207 0.92047 0.85166 0.88319 0.88683 0.88709 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 7.10 37.16 0.26 -1.38 16 2 C 0.21 2.32 0.65 -131.81 -0.09 2.24 16 3 C 0.05 0.61 4.37 -3.82 -0.02 0.60 16 4 N -0.66 -10.75 5.32 -115.05 -0.61 -11.36 16 5 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 6 C 0.45 10.65 7.82 -10.98 -0.09 10.56 16 7 O -0.57 -15.36 15.78 5.55 0.09 -15.27 16 8 N -0.59 -14.59 5.09 -10.96 -0.06 -14.65 16 9 C -0.30 -8.78 10.16 -14.94 -0.15 -8.93 16 10 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 11 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 12 N -0.88 -26.21 13.96 55.50 0.77 -25.43 16 13 Si 0.88 19.94 27.73 -169.99 -4.71 15.23 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.27 -5.61 6.53 56.52 0.37 -5.24 16 17 N -0.72 -7.23 4.29 -47.60 -0.20 -7.43 16 18 C 0.50 6.15 6.41 -10.98 -0.07 6.08 16 19 O -0.52 -8.27 12.76 -14.09 -0.18 -8.45 16 20 C 0.06 0.64 3.95 -27.16 -0.11 0.53 16 21 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 22 C -0.15 -0.96 6.52 -24.78 -0.16 -1.12 16 23 C -0.15 -0.94 7.16 -24.48 -0.18 -1.12 16 24 C 0.05 0.41 7.78 38.18 0.30 0.71 16 25 O -0.35 -4.51 10.56 -54.88 -0.58 -5.09 16 26 C -0.15 -1.49 5.00 -90.62 -0.45 -1.95 16 27 C -0.17 -1.48 9.63 -26.73 -0.26 -1.74 16 28 C -0.18 -1.45 9.71 -26.73 -0.26 -1.71 16 29 H 0.07 0.61 6.78 -51.93 -0.35 0.26 16 30 H 0.06 0.50 6.98 -51.93 -0.36 0.14 16 31 H 0.08 0.92 6.31 -51.93 -0.33 0.60 16 32 H 0.06 0.86 6.05 -51.93 -0.31 0.55 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.35 5.98 7.72 -39.29 -0.30 5.68 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.37 8.13 5.77 -40.82 -0.24 7.89 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.40 3.24 8.38 -40.82 -0.34 2.90 16 40 H 0.08 0.53 7.84 -51.93 -0.41 0.13 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.13 1.67 7.53 -51.93 -0.39 1.28 16 47 H 0.10 0.77 5.88 -51.93 -0.31 0.46 16 48 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.09 0.65 7.35 -51.93 -0.38 0.27 16 LS Contribution 396.01 15.07 5.97 5.97 Total: -1.00 -35.41 396.01 -8.83 -44.24 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -7.93 Total: 17.59 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.39 Total: 4.65 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.10 Total: -58.87 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.67 Total: -28.81 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.71 Total: 15.23 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.41 -8.83 -44.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568012866.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.605 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds