Wall clock time and date at job start Sat Apr 11 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47133 * 2 1 4 4 N 1.46900 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.46897 * 111.00062 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47446 * 180.02562 * 5 4 3 7 7 O 1.21293 * 119.99801 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00171 * 180.02562 * 6 5 4 9 9 C 1.37096 * 119.99891 * 180.02562 * 8 6 5 10 10 H 1.07999 * 119.99719 * 359.97438 * 9 8 6 11 11 C 1.38946 * 120.00148 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00470 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 119.99797 * 359.72482 * 11 9 8 14 14 H 1.48501 * 109.47491 * 89.99954 * 13 11 9 15 15 H 1.48506 * 109.47447 * 210.00100 * 13 11 9 16 16 H 1.48502 * 109.47100 * 329.99854 * 13 11 9 17 17 N 1.46499 * 109.47509 * 120.00491 * 2 1 3 18 18 C 1.34776 * 119.99630 * 295.86686 * 17 2 1 19 19 O 1.21276 * 120.00603 * 4.94927 * 18 17 2 20 20 C 1.50703 * 119.99714 * 184.94811 * 18 17 2 21 21 H 1.08998 * 109.82130 * 55.56634 * 20 18 17 22 22 C 1.54384 * 109.82989 * 294.58780 * 20 18 17 23 23 C 1.55309 * 102.25095 * 219.12827 * 22 20 18 24 24 C 1.54944 * 100.94052 * 34.13376 * 23 22 20 25 25 O 1.43239 * 109.83126 * 176.45654 * 20 18 17 26 26 C 1.53010 * 109.46923 * 240.00487 * 2 1 3 27 27 C 1.52998 * 117.49398 * 12.71398 * 26 2 1 28 28 C 1.52994 * 117.49768 * 304.09190 * 26 2 1 29 29 H 1.08996 * 109.47537 * 59.99440 * 1 2 3 30 30 H 1.08999 * 109.46860 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46615 * 299.99344 * 1 2 3 32 32 H 1.09003 * 109.46834 * 60.00790 * 3 2 1 33 33 H 1.08996 * 109.47366 * 300.00665 * 3 2 1 34 34 H 1.00899 * 110.99835 * 303.95801 * 4 3 2 35 35 H 1.09007 * 109.47037 * 60.00152 * 5 4 3 36 36 H 1.09002 * 109.47498 * 300.00576 * 5 4 3 37 37 H 0.96999 * 120.00171 * 359.97438 * 8 6 5 38 38 H 0.96996 * 120.00483 * 180.02562 * 12 11 9 39 39 H 0.96995 * 119.99666 * 115.86494 * 17 2 1 40 40 H 1.08996 * 110.85033 * 337.31905 * 22 20 18 41 41 H 1.08998 * 110.84912 * 100.94154 * 22 20 18 42 42 H 1.08995 * 111.12281 * 276.21203 * 23 22 20 43 43 H 1.09005 * 111.15806 * 152.06986 * 23 22 20 44 44 H 1.09003 * 110.30687 * 204.63801 * 24 23 22 45 45 H 1.09003 * 110.30858 * 82.46850 * 24 23 22 46 46 H 1.09001 * 115.54501 * 158.41856 * 26 2 1 47 47 H 1.08993 * 117.50199 * 0.02562 * 27 26 2 48 48 H 1.09004 * 117.49581 * 145.02482 * 27 26 2 49 49 H 1.08996 * 117.49668 * 214.97812 * 28 26 2 50 50 H 1.09004 * 117.49787 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0355 2.8139 0.0000 6 6 5.5419 2.7738 -0.0013 7 8 6.1202 1.7075 -0.0021 8 7 6.2467 3.9226 -0.0005 9 6 7.6172 3.8860 -0.0022 10 1 8.1320 2.9366 -0.0038 11 6 8.3438 5.0703 -0.0019 12 7 9.6575 5.0353 -0.0031 13 14 7.4533 6.7124 -0.0070 14 1 7.2133 7.1497 1.3917 15 1 8.2852 7.7246 -0.7062 16 1 6.1535 6.5684 -0.7106 17 7 2.0184 -0.6907 1.1961 18 6 1.7630 -0.1837 2.4184 19 8 1.0539 0.7933 2.5337 20 6 2.3585 -0.8311 3.6421 21 1 3.4424 -0.8852 3.5412 22 6 1.7757 -2.2496 3.8203 23 6 1.5971 -2.3414 5.3603 24 6 1.2283 -0.8757 5.7015 25 8 2.0162 -0.0730 4.8082 26 6 2.0400 -0.7212 -1.2494 27 6 1.0272 -1.0160 -2.3576 28 6 1.5582 -2.1542 -1.4839 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6768 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.8709 0.9162 0.7805 35 1 3.6864 3.3367 0.8905 36 1 3.6856 3.3379 -0.8895 37 1 5.7843 4.7753 0.0005 38 1 10.1647 5.8621 -0.0025 39 1 2.5256 -1.5128 1.1082 40 1 0.8158 -2.3412 3.3123 41 1 2.4773 -3.0046 3.4655 42 1 2.5269 -2.6360 5.8468 43 1 0.7867 -3.0217 5.6225 44 1 1.4849 -0.6523 6.7371 45 1 0.1661 -0.7027 5.5283 46 1 3.0589 -0.4771 -1.5501 47 1 -0.0022 -0.6959 -2.1969 48 1 1.3797 -0.9660 -3.3879 49 1 2.2600 -2.8529 -1.9393 50 1 0.8783 -2.5834 -0.7479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568012866.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:59 Heat of formation + Delta-G solvation = -106.225229 kcal Electronic energy + Delta-G solvation = -30767.687780 eV Core-core repulsion = 26602.004818 eV Total energy + Delta-G solvation = -4165.682963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.79262 -40.42727 -40.07570 -38.56579 -36.62390 -35.88279 -34.92449 -33.76548 -33.20192 -32.11465 -30.14504 -29.15793 -26.82607 -25.46303 -24.51789 -23.81082 -23.08243 -22.69991 -21.34332 -21.16923 -20.48031 -20.08932 -18.75586 -17.98499 -17.71984 -17.28487 -16.92891 -16.64601 -16.54710 -16.28528 -16.10172 -15.62291 -15.51834 -15.42224 -14.96964 -14.57570 -14.45840 -14.31654 -14.19161 -14.10135 -13.71165 -13.31515 -13.14825 -13.11913 -12.93622 -12.80695 -12.71587 -12.45377 -12.40867 -12.20852 -12.09774 -12.03397 -11.99963 -11.87332 -11.54135 -11.24892 -11.10506 -11.00384 -10.51179 -10.27233 -10.22846 -10.07312 -9.31664 -8.43507 -6.04008 1.28564 1.32888 1.41727 1.54343 1.91268 1.96186 2.20487 2.67162 2.88636 3.06963 3.12617 3.35139 3.43751 3.61986 3.72259 3.85010 3.87150 4.06631 4.12188 4.15984 4.17305 4.21613 4.31084 4.37016 4.41860 4.49153 4.59698 4.63035 4.73888 4.75595 4.76112 4.81615 4.86761 4.92556 4.93919 4.98128 5.06302 5.17211 5.29238 5.35881 5.49368 5.52170 5.57224 5.85136 5.89034 5.97553 6.27675 6.56849 6.60445 6.84816 7.24859 7.36410 7.91512 8.73951 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010359 B = 0.003071 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.299889 B = 9114.696842 C =10734.900597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.218 3.782 3 C 0.049 3.951 4 N -0.664 5.664 5 C 0.059 3.941 6 C 0.452 3.548 7 O -0.608 6.608 8 N -0.591 5.591 9 C -0.328 4.328 10 H 0.058 0.942 11 C -0.012 4.012 12 N -0.932 5.932 13 Si 0.961 3.039 14 H -0.259 1.259 15 H -0.272 1.272 16 H -0.234 1.234 17 N -0.705 5.705 18 C 0.499 3.501 19 O -0.561 6.561 20 C 0.054 3.946 21 H 0.111 0.889 22 C -0.136 4.136 23 C -0.145 4.145 24 C 0.036 3.964 25 O -0.389 6.389 26 C -0.162 4.162 27 C -0.168 4.168 28 C -0.165 4.165 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.337 0.663 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.388 0.612 38 H 0.280 0.720 39 H 0.412 0.588 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.057 0.943 46 H 0.101 0.899 47 H 0.110 0.890 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.034 -15.820 4.096 29.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.133 3.867 3 C -0.081 4.081 4 N -0.295 5.295 5 C -0.074 4.074 6 C 0.240 3.760 7 O -0.492 6.492 8 N -0.233 5.233 9 C -0.457 4.457 10 H 0.077 0.923 11 C -0.211 4.211 12 N -0.572 5.572 13 Si 0.781 3.219 14 H -0.184 1.184 15 H -0.197 1.197 16 H -0.158 1.158 17 N -0.359 5.359 18 C 0.286 3.714 19 O -0.439 6.439 20 C -0.007 4.007 21 H 0.128 0.872 22 C -0.174 4.174 23 C -0.182 4.182 24 C -0.040 4.040 25 O -0.308 6.308 26 C -0.180 4.180 27 C -0.205 4.205 28 C -0.202 4.202 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.155 0.845 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.223 0.777 38 H 0.089 0.911 39 H 0.249 0.751 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.110 0.890 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.075 0.925 46 H 0.120 0.880 47 H 0.129 0.871 48 H 0.114 0.886 49 H 0.118 0.882 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.837 -15.576 3.537 29.530 hybrid contribution 0.490 1.104 0.864 1.485 sum -24.347 -14.472 4.400 28.663 Atomic orbital electron populations 1.22232 0.93289 1.03052 1.02915 1.19724 0.93733 0.89996 0.83289 1.22414 0.86730 0.97332 1.01641 1.60144 1.07112 1.11730 1.50558 1.21634 0.90027 0.92494 1.03254 1.20784 0.90364 0.83642 0.81228 1.90519 1.72762 1.30939 1.55020 1.42041 1.05886 1.07582 1.67753 1.19017 0.81234 0.95119 1.50349 0.92349 1.26055 0.96195 1.02775 0.96072 1.69788 1.07078 1.30156 1.50219 0.85415 0.79558 0.77021 0.79874 1.18365 1.19657 1.15791 1.46044 1.56863 1.28600 1.04364 1.21376 0.80402 0.84102 0.85527 1.90634 1.38589 1.27843 1.86853 1.22887 1.00744 0.92596 0.84456 0.87178 1.23146 1.03018 0.93264 0.97973 1.23282 1.04378 0.96058 0.94504 1.23687 0.95137 0.90748 0.94415 1.88515 1.72189 1.40116 1.29968 1.22266 1.00176 0.99251 0.96354 1.23171 0.99157 1.02553 0.95666 1.23018 1.03577 0.90450 1.03143 0.90160 0.90743 0.92838 0.94521 0.89365 0.84458 0.92298 0.86767 0.77656 0.91076 0.75095 0.89778 0.86284 0.89008 0.87324 0.88359 0.92508 0.88038 0.87148 0.88567 0.88237 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 7.10 71.98 0.51 -2.31 16 2 C 0.22 4.47 0.65 3.61 0.00 4.47 16 3 C 0.05 1.28 4.37 86.30 0.38 1.66 16 4 N -0.66 -21.39 5.32 -517.92 -2.76 -24.15 16 5 C 0.06 2.04 6.17 85.56 0.53 2.57 16 6 C 0.45 21.49 7.82 87.66 0.69 22.18 16 7 O -0.61 -34.32 15.78 -3.07 -0.05 -34.36 16 8 N -0.59 -29.23 5.09 -306.99 -1.56 -30.79 16 9 C -0.33 -19.70 10.16 84.04 0.85 -18.84 16 10 H 0.06 4.13 7.39 -2.91 -0.02 4.11 16 11 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 12 N -0.93 -56.95 13.96 21.66 0.30 -56.65 16 13 Si 0.96 40.25 27.73 68.60 1.90 42.15 16 14 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 15 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 16 H -0.23 -8.45 6.53 99.48 0.65 -7.80 16 17 N -0.70 -13.67 4.29 -422.91 -1.81 -15.49 16 18 C 0.50 12.22 6.41 87.66 0.56 12.78 16 19 O -0.56 -18.25 12.76 15.77 0.20 -18.05 16 20 C 0.05 1.12 3.95 30.32 0.12 1.24 16 21 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 22 C -0.14 -1.54 6.52 31.86 0.21 -1.33 16 23 C -0.14 -1.46 7.16 32.05 0.23 -1.23 16 24 C 0.04 0.61 7.78 72.65 0.56 1.18 16 25 O -0.39 -10.24 10.56 -130.19 -1.38 -11.62 16 26 C -0.16 -3.03 5.00 -10.79 -0.05 -3.09 16 27 C -0.17 -2.43 9.63 30.59 0.29 -2.14 16 28 C -0.16 -2.18 9.71 30.59 0.30 -1.89 16 29 H 0.08 1.24 6.78 -2.39 -0.02 1.23 16 30 H 0.07 1.08 6.98 -2.39 -0.02 1.07 16 31 H 0.05 1.26 6.31 -2.39 -0.02 1.24 16 32 H 0.04 1.14 6.05 -2.39 -0.01 1.12 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.34 11.85 7.72 -89.69 -0.69 11.16 16 35 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 37 H 0.39 16.24 5.77 -92.71 -0.53 15.71 16 38 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.41 6.14 8.38 -92.71 -0.78 5.37 16 40 H 0.08 0.92 7.84 -2.39 -0.02 0.90 16 41 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.10 2.57 7.53 -2.39 -0.02 2.55 16 47 H 0.11 1.35 5.88 -2.39 -0.01 1.34 16 48 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 49 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.11 1.12 7.35 -2.39 -0.02 1.10 16 Total: -1.00 -82.95 396.01 -0.58 -83.53 By element: Atomic # 1 Polarization: 51.49 SS G_CDS: -1.08 Total: 50.42 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 5.65 Total: 15.02 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -5.83 Total: -127.08 kcal Atomic # 8 Polarization: -62.81 SS G_CDS: -1.22 Total: -64.03 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.90 Total: 42.15 kcal Total: -82.95 -0.58 -83.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568012866.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.699 kcal (2) G-P(sol) polarization free energy of solvation -82.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds