Wall clock time and date at job start Sat Apr 11 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47203 * 2 1 4 4 N 1.46891 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.46905 * 111.00145 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47146 * 180.02562 * 5 4 3 7 7 O 1.21292 * 120.00106 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99752 * 179.97438 * 6 5 4 9 9 C 1.37099 * 119.99919 * 179.97438 * 8 6 5 10 10 H 1.08000 * 119.99910 * 359.97438 * 9 8 6 11 11 C 1.38951 * 120.00045 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99876 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99985 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47192 * 359.97438 * 13 11 9 15 15 H 1.48507 * 109.47354 * 119.99764 * 13 11 9 16 16 H 1.48500 * 109.46889 * 239.99476 * 13 11 9 17 17 N 1.46499 * 109.47381 * 120.00228 * 2 1 3 18 18 C 1.34776 * 119.99931 * 295.96901 * 17 2 1 19 19 O 1.21281 * 119.99902 * 4.85116 * 18 17 2 20 20 C 1.50695 * 119.99976 * 184.85863 * 18 17 2 21 21 H 1.08997 * 110.75546 * 62.01132 * 20 18 17 22 22 C 1.55305 * 110.84721 * 185.71232 * 20 18 17 23 23 C 1.54953 * 100.94266 * 152.32018 * 22 20 18 24 24 O 1.43646 * 105.13663 * 323.55790 * 23 22 20 25 25 C 1.43241 * 109.97388 * 24.42240 * 24 23 22 26 26 C 1.52997 * 109.46924 * 240.00196 * 2 1 3 27 27 C 1.53006 * 117.50086 * 13.81783 * 26 2 1 28 28 C 1.52999 * 60.00170 * 252.50720 * 27 26 2 29 29 H 1.08997 * 109.47242 * 60.00064 * 1 2 3 30 30 H 1.09006 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47323 * 299.99452 * 1 2 3 32 32 H 1.09000 * 109.47058 * 60.00047 * 3 2 1 33 33 H 1.09008 * 109.47467 * 300.00664 * 3 2 1 34 34 H 1.00894 * 111.00327 * 56.04758 * 4 3 2 35 35 H 1.09008 * 109.46487 * 299.99859 * 5 4 3 36 36 H 1.09002 * 109.47671 * 59.99417 * 5 4 3 37 37 H 0.97001 * 120.00298 * 359.97438 * 8 6 5 38 38 H 0.97000 * 119.99522 * 180.02562 * 12 11 9 39 39 H 0.96997 * 119.99803 * 115.95823 * 17 2 1 40 40 H 1.08997 * 111.12513 * 270.23748 * 22 20 18 41 41 H 1.08996 * 111.12927 * 34.40343 * 22 20 18 42 42 H 1.08997 * 110.30896 * 204.63684 * 23 22 20 43 43 H 1.09010 * 110.38841 * 82.51058 * 23 22 20 44 44 H 1.08997 * 109.83438 * 238.78280 * 25 24 23 45 45 H 1.08995 * 109.82537 * 117.80132 * 25 24 23 46 46 H 1.09003 * 115.55118 * 159.52126 * 26 2 1 47 47 H 1.08999 * 117.49483 * 0.02562 * 27 26 2 48 48 H 1.09003 * 117.49859 * 145.02052 * 27 26 2 49 49 H 1.08991 * 117.50074 * 252.51198 * 28 27 26 50 50 H 1.08998 * 117.49587 * 107.48141 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 -0.0006 5 6 4.0354 2.8139 0.0000 6 6 5.5418 2.7737 -0.0013 7 8 6.1201 1.7075 -0.0021 8 7 6.2466 3.9225 -0.0016 9 6 7.6171 3.8860 -0.0022 10 1 8.1320 2.9366 -0.0021 11 6 8.3437 5.0704 -0.0019 12 7 7.7172 6.2255 -0.0015 13 14 10.2110 5.0206 -0.0035 14 1 10.6685 3.6077 -0.0044 15 1 10.7236 5.7080 -1.2160 16 1 10.7255 5.7063 1.2090 17 7 2.0184 -0.6906 1.1961 18 6 1.7612 -0.1848 2.4186 19 8 1.0520 0.7923 2.5336 20 6 2.3549 -0.8331 3.6425 21 1 3.4437 -0.7930 3.6112 22 6 1.8100 -0.1718 4.9377 23 6 1.9219 -1.3492 5.9387 24 8 1.6007 -2.5227 5.1750 25 6 1.8628 -2.2895 3.7862 26 6 2.0399 -0.7212 -1.2493 27 6 1.0329 -0.9931 -2.3686 28 6 1.5379 -2.1451 -1.4975 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.8702 0.9165 -0.7822 35 1 3.6855 3.3377 -0.8897 36 1 3.6862 3.3369 0.8903 37 1 5.7842 4.7752 -0.0013 38 1 8.2245 7.0523 -0.0017 39 1 2.5267 -1.5120 1.1082 40 1 2.4365 0.6657 5.2447 41 1 0.7732 0.1406 4.8131 42 1 1.2097 -1.2217 6.7540 43 1 2.9366 -1.4191 6.3310 44 1 0.9490 -2.4296 3.2088 45 1 2.6328 -2.9763 3.4349 46 1 3.0652 -0.4913 -1.5392 47 1 0.0072 -0.6578 -2.2151 48 1 1.3956 -0.9421 -3.3953 49 1 2.2328 -2.8518 -1.9510 50 1 0.8443 -2.5679 -0.7707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698644126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:28 Heat of formation + Delta-G solvation = -87.678997 kcal Electronic energy + Delta-G solvation = -30625.336581 eV Core-core repulsion = 26460.457843 eV Total energy + Delta-G solvation = -4164.878738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.81495 -39.44583 -38.20073 -37.84792 -35.29710 -34.08015 -33.65218 -32.56086 -31.22759 -30.73790 -29.25831 -27.64831 -25.28408 -24.31191 -23.34923 -22.99156 -22.57915 -22.30321 -20.06445 -19.33981 -19.09534 -17.88854 -17.81710 -16.92827 -16.49301 -16.20997 -15.83647 -15.53395 -15.14693 -14.91939 -14.63689 -14.51790 -14.27000 -14.07491 -13.74559 -13.56427 -13.40708 -13.18090 -13.04735 -12.74515 -12.37090 -12.19208 -11.97478 -11.71840 -11.68155 -11.60302 -11.47783 -11.43181 -11.37252 -11.13909 -11.09308 -11.04851 -10.58880 -10.35103 -10.33022 -10.22670 -9.86534 -9.52924 -9.51119 -9.01611 -8.42615 -8.00902 -7.94373 -6.41656 -3.82510 2.61792 2.96930 3.15792 3.26204 3.33271 3.58415 3.70763 3.91879 4.10296 4.11138 4.31035 4.37233 4.54324 4.61956 4.68239 4.77995 4.85153 4.90098 5.00412 5.07110 5.13925 5.18147 5.26398 5.32455 5.38720 5.40827 5.51173 5.54952 5.57448 5.61926 5.65922 5.69706 5.73474 5.86268 5.88510 5.92036 5.94850 6.02712 6.10831 6.17904 6.28598 6.53889 6.67142 7.24900 7.54488 7.55077 7.72023 8.06723 8.24838 8.61546 9.17919 9.54972 10.06247 10.76202 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010090 B = 0.002928 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.320732 B = 9560.650800 C =11306.067039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.216 3.784 3 C 0.047 3.953 4 N -0.661 5.661 5 C 0.051 3.949 6 C 0.443 3.557 7 O -0.585 6.585 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.901 5.901 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 N -0.703 5.703 18 C 0.539 3.461 19 O -0.537 6.537 20 C -0.149 4.149 21 H 0.116 0.884 22 C -0.134 4.134 23 C 0.049 3.951 24 O -0.383 6.383 25 C 0.064 3.936 26 C -0.165 4.165 27 C -0.172 4.172 28 C -0.174 4.174 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.033 0.967 34 H 0.343 0.657 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.400 0.600 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.115 0.885 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.463 -14.653 2.249 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.130 3.870 3 C -0.084 4.084 4 N -0.295 5.295 5 C -0.081 4.081 6 C 0.228 3.772 7 O -0.469 6.469 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.756 3.244 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 N -0.353 5.353 18 C 0.325 3.675 19 O -0.414 6.414 20 C -0.170 4.170 21 H 0.134 0.866 22 C -0.172 4.172 23 C -0.027 4.027 24 O -0.302 6.302 25 C -0.013 4.013 26 C -0.184 4.184 27 C -0.210 4.210 28 C -0.211 4.211 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.163 0.837 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.234 0.766 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.133 0.867 47 H 0.120 0.880 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.503 -14.716 3.086 22.326 hybrid contribution 1.048 0.838 -1.176 1.784 sum -15.455 -13.879 1.910 20.860 Atomic orbital electron populations 1.22321 0.94291 1.02224 1.03588 1.19711 0.93137 0.91461 0.82741 1.22403 0.88723 0.95165 1.02082 1.60052 1.05290 1.13228 1.50887 1.21657 0.94936 0.90412 1.01133 1.19815 0.88080 0.84992 0.84302 1.90503 1.71224 1.29653 1.55528 1.41877 1.07030 1.06809 1.64364 1.19743 0.81082 0.94518 1.47486 0.87917 1.25266 1.00694 0.94655 0.97376 1.69625 1.36494 0.97480 1.50676 0.85808 0.82304 0.78554 0.77711 1.19237 1.20775 1.20733 1.45804 1.56729 1.27953 1.04787 1.19907 0.79949 0.83757 0.83870 1.90619 1.37821 1.26569 1.86360 1.22957 1.03219 0.96105 0.94720 0.86563 1.23136 1.03686 0.98307 0.92048 1.23458 1.00890 0.83680 0.94663 1.88396 1.87767 1.36684 1.17386 1.23060 1.00540 0.93928 0.83774 1.22560 1.00037 0.98962 0.96817 1.23118 0.99443 1.02678 0.95727 1.22944 1.03781 0.91043 1.03328 0.91528 0.92388 0.90221 0.88519 0.94911 0.83651 0.94066 0.89733 0.77471 0.91929 0.76605 0.89177 0.89077 0.89457 0.91804 0.91104 0.90605 0.86721 0.87968 0.88597 0.88544 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 7.12 37.16 0.26 -1.37 16 2 C 0.22 2.31 0.65 -131.82 -0.09 2.23 16 3 C 0.05 0.63 4.40 -3.83 -0.02 0.61 16 4 N -0.66 -10.74 5.94 -115.06 -0.68 -11.42 16 5 C 0.05 0.94 6.17 -4.97 -0.03 0.91 16 6 C 0.44 10.55 7.82 -10.99 -0.09 10.47 16 7 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 8 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 9 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 10 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 13 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 N -0.70 -7.43 4.85 -47.61 -0.23 -7.66 16 18 C 0.54 6.61 6.43 -10.99 -0.07 6.54 16 19 O -0.54 -8.08 12.00 5.56 0.07 -8.01 16 20 C -0.15 -1.54 3.40 -89.82 -0.31 -1.84 16 21 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 22 C -0.13 -1.36 6.23 -24.48 -0.15 -1.51 16 23 C 0.05 0.45 7.78 38.19 0.30 0.74 16 24 O -0.38 -4.19 11.36 -35.23 -0.40 -4.59 16 25 C 0.06 0.59 7.29 37.89 0.28 0.86 16 26 C -0.16 -1.56 4.95 -90.61 -0.45 -2.01 16 27 C -0.17 -1.36 9.65 -26.73 -0.26 -1.62 16 28 C -0.17 -1.31 9.76 -26.73 -0.26 -1.57 16 29 H 0.07 0.59 6.73 -51.93 -0.35 0.24 16 30 H 0.06 0.50 6.95 -51.93 -0.36 0.14 16 31 H 0.08 0.95 6.30 -51.93 -0.33 0.62 16 32 H 0.10 1.51 6.05 -51.93 -0.31 1.20 16 33 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.34 5.62 6.34 -39.29 -0.25 5.37 16 35 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.40 3.57 8.34 -40.82 -0.34 3.23 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.01 7.47 -51.93 -0.39 0.63 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 44 H 0.07 0.62 7.81 -51.93 -0.41 0.22 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.11 1.26 6.27 -51.93 -0.33 0.94 16 47 H 0.10 0.75 5.89 -51.93 -0.31 0.44 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.10 0.67 7.28 -51.93 -0.38 0.29 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -32.74 396.19 -8.47 -41.21 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -7.80 Total: 18.23 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.12 Total: 4.41 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.25 Total: -57.64 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.25 Total: -28.27 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.74 -8.47 -41.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698644126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.469 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds