Wall clock time and date at job start Sat Apr 11 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47597 * 2 1 4 4 N 1.46904 * 109.46844 * 300.00192 * 3 2 1 5 5 C 1.46897 * 110.99978 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47422 * 179.97438 * 5 4 3 7 7 O 1.21294 * 119.99789 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00151 * 180.02562 * 6 5 4 9 9 C 1.37103 * 119.99729 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99995 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99829 * 179.97438 * 9 8 6 12 12 N 1.31417 * 119.99821 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99785 * 179.72252 * 11 9 8 14 14 H 1.48502 * 109.46991 * 60.00864 * 13 11 9 15 15 H 1.48502 * 109.46951 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47444 * 300.00538 * 13 11 9 17 17 N 1.46499 * 109.47093 * 239.99634 * 2 1 3 18 18 C 1.34782 * 120.00055 * 173.96483 * 17 2 1 19 19 O 1.21284 * 120.00021 * 5.46196 * 18 17 2 20 20 C 1.50698 * 119.99985 * 185.46491 * 18 17 2 21 21 H 1.08997 * 110.45766 * 59.30071 * 20 18 17 22 22 C 1.54504 * 110.51015 * 181.90106 * 20 18 17 23 23 C 1.54478 * 104.06200 * 118.64537 * 22 20 18 24 24 O 1.44429 * 104.80538 * 23.97982 * 23 22 20 25 25 C 1.44642 * 105.36279 * 319.56829 * 24 23 22 26 26 C 1.53001 * 109.47061 * 119.99949 * 2 1 3 27 27 C 1.53005 * 117.50156 * 123.05099 * 26 2 1 28 28 C 1.52992 * 59.99919 * 252.51047 * 27 26 2 29 29 H 1.09002 * 109.47411 * 60.00194 * 1 2 3 30 30 H 1.08994 * 109.47581 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47212 * 300.00171 * 1 2 3 32 32 H 1.08993 * 109.47310 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46979 * 59.99686 * 3 2 1 34 34 H 1.00896 * 111.00102 * 56.04008 * 4 3 2 35 35 H 1.09004 * 109.47198 * 59.99672 * 5 4 3 36 36 H 1.09001 * 109.47135 * 300.00452 * 5 4 3 37 37 H 0.96998 * 119.99748 * 359.97438 * 8 6 5 38 38 H 0.96999 * 119.99470 * 179.97438 * 12 11 9 39 39 H 0.96995 * 119.99928 * 353.96146 * 17 2 1 40 40 H 1.09001 * 110.51577 * 237.28867 * 22 20 18 41 41 H 1.08997 * 110.51415 * 0.02562 * 22 20 18 42 42 H 1.09003 * 110.37513 * 142.80939 * 23 22 20 43 43 H 1.09004 * 110.37312 * 265.14694 * 23 22 20 44 44 H 1.09007 * 110.34113 * 281.58848 * 25 24 23 45 45 H 1.09005 * 110.50927 * 159.18459 * 25 24 23 46 46 H 1.08997 * 115.55090 * 268.76212 * 26 2 1 47 47 H 1.09003 * 117.49357 * 0.02562 * 27 26 2 48 48 H 1.08997 * 117.50114 * 145.01702 * 27 26 2 49 49 H 1.09005 * 117.50067 * 252.50796 * 28 27 26 50 50 H 1.09003 * 117.51944 * 107.48400 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5504 2.1350 -1.1995 5 6 2.0209 3.5261 -1.2332 6 6 1.5004 4.2026 -2.4751 7 8 0.8061 3.5863 -3.2556 8 7 1.8072 5.4921 -2.7190 9 6 1.3331 6.1077 -3.8486 10 1 0.7135 5.5594 -4.5427 11 6 1.6490 7.4373 -4.0998 12 7 2.4025 8.1046 -3.2548 13 14 1.0095 8.2737 -5.6428 14 1 -0.4754 8.2525 -5.6381 15 1 1.4848 9.6802 -5.6766 16 1 1.5111 7.5533 -6.8405 17 7 2.0183 -0.6907 -1.1961 18 6 3.3373 -0.7087 -1.4727 19 8 4.1290 -0.2399 -0.6824 20 6 3.8283 -1.3111 -2.7637 21 1 3.3898 -0.7933 -3.6168 22 6 5.3709 -1.2587 -2.8333 23 6 5.7933 -2.7421 -2.9193 24 8 4.6421 -3.4227 -3.4647 25 6 3.4980 -2.8191 -2.8176 26 6 2.0399 -0.7212 1.2493 27 6 2.9733 -1.9161 1.0437 28 6 1.5312 -2.1418 1.5020 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 0.8900 34 1 0.5439 2.0925 -1.2559 35 1 3.1109 3.5409 -1.2415 36 1 1.6572 4.0541 -0.3517 37 1 2.3628 5.9848 -2.0949 38 1 2.6233 9.0326 -3.4304 39 1 1.3923 -1.1351 -1.7890 40 1 5.6951 -0.7172 -3.7221 41 1 5.7784 -0.7975 -1.9338 42 1 6.6504 -2.8548 -3.5833 43 1 6.0275 -3.1281 -1.9272 44 1 3.3786 -3.2176 -1.8100 45 1 2.5944 -2.9889 -3.4031 46 1 2.2167 -0.0879 2.1185 47 1 3.2243 -2.1880 0.0184 48 1 3.7644 -2.0688 1.7777 49 1 1.3735 -2.4432 2.5377 50 1 0.8328 -2.5625 0.7786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698644127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:32 Heat of formation + Delta-G solvation = -80.121803 kcal Electronic energy + Delta-G solvation = -30937.555880 eV Core-core repulsion = 26773.004846 eV Total energy + Delta-G solvation = -4164.551033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05770 -39.31054 -38.20735 -37.31411 -35.59290 -34.02873 -33.58739 -32.39214 -31.25131 -30.88989 -29.18957 -27.50252 -25.69651 -24.10115 -23.76045 -22.71255 -22.36614 -21.87475 -20.15000 -19.50246 -19.14044 -17.89645 -17.72595 -16.77559 -16.52495 -16.44884 -15.62494 -15.42754 -15.35121 -15.04025 -14.56081 -14.47329 -14.28702 -14.02057 -13.72089 -13.55065 -13.29055 -13.08718 -12.86759 -12.58064 -12.51448 -12.30295 -11.96226 -11.71288 -11.62858 -11.53188 -11.48633 -11.40887 -11.32247 -11.08255 -11.00865 -10.90486 -10.48690 -10.44199 -10.25677 -10.20675 -10.06418 -9.49967 -9.47903 -9.01115 -8.42431 -8.00715 -7.93998 -6.40836 -3.81821 2.64124 3.07442 3.20115 3.25769 3.30001 3.64768 3.73441 3.92604 4.09733 4.25536 4.28572 4.55133 4.63659 4.69168 4.72402 4.78128 4.89501 4.96956 4.99895 5.06931 5.16124 5.19056 5.25579 5.27093 5.36110 5.47003 5.50245 5.55024 5.59483 5.62216 5.65096 5.81570 5.84325 5.86780 5.90982 5.95416 5.97208 6.03114 6.05398 6.15761 6.29060 6.47937 6.56363 7.24601 7.52395 7.55345 7.72233 8.06944 8.26883 8.62267 9.18374 9.55530 10.06943 10.76894 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.002787 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.133528 B =10045.658396 C =11407.411442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.213 3.787 3 C 0.046 3.954 4 N -0.662 5.662 5 C 0.052 3.948 6 C 0.442 3.558 7 O -0.585 6.585 8 N -0.564 5.564 9 C -0.300 4.300 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.273 1.273 17 N -0.707 5.707 18 C 0.536 3.464 19 O -0.527 6.527 20 C -0.148 4.148 21 H 0.114 0.886 22 C -0.145 4.145 23 C 0.045 3.955 24 O -0.374 6.374 25 C 0.057 3.943 26 C -0.150 4.150 27 C -0.156 4.156 28 C -0.183 4.183 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.031 0.969 34 H 0.344 0.656 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.398 0.602 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 -21.265 8.955 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.127 3.873 3 C -0.085 4.085 4 N -0.295 5.295 5 C -0.081 4.081 6 C 0.228 3.772 7 O -0.469 6.469 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 N -0.358 5.358 18 C 0.323 3.677 19 O -0.404 6.404 20 C -0.170 4.170 21 H 0.132 0.868 22 C -0.183 4.183 23 C -0.032 4.032 24 O -0.292 6.292 25 C -0.021 4.021 26 C -0.169 4.169 27 C -0.193 4.193 28 C -0.220 4.220 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.164 0.836 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.232 0.768 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.106 0.894 49 H 0.108 0.892 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.149 -21.499 8.415 23.187 hybrid contribution -0.799 1.383 0.216 1.612 sum 1.350 -20.115 8.631 21.930 Atomic orbital electron populations 1.22100 0.93235 1.02844 1.03510 1.19732 0.93426 0.91080 0.83107 1.22419 1.03084 0.91799 0.91153 1.60044 1.16945 1.13947 1.38552 1.21643 1.01012 0.88731 0.96676 1.19811 0.85883 0.82977 0.88547 1.90502 1.42219 1.64670 1.49546 1.41860 1.46100 1.09422 1.22633 1.19647 1.29199 0.94142 0.99976 0.88015 1.25263 0.96962 0.96590 0.99114 1.69611 1.36982 1.11063 1.36663 0.85920 0.79103 0.77874 0.81329 1.19930 1.20975 1.19887 1.45845 1.07425 1.55982 1.26558 1.19919 0.82291 0.78548 0.86967 1.90639 1.54701 1.46265 1.48757 1.22748 0.98484 0.97742 0.97993 0.86792 1.22945 0.92889 0.97413 1.05071 1.23479 0.89697 0.91012 0.98996 1.89157 1.15171 1.60181 1.64699 1.23418 0.90815 0.89617 0.98219 1.22517 1.04771 0.90615 0.99032 1.22943 0.92523 1.01560 1.02296 1.22991 0.97997 0.99129 1.01889 0.90828 0.91748 0.90915 0.88282 0.95086 0.83621 0.89752 0.94085 0.77470 0.91821 0.76793 0.90087 0.87942 0.88885 0.92180 0.92027 0.88342 0.87464 0.88888 0.89410 0.89171 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 8.04 37.15 0.30 -1.10 16 2 C 0.21 2.21 0.65 -131.82 -0.09 2.13 16 3 C 0.05 0.61 4.32 -3.82 -0.02 0.59 16 4 N -0.66 -10.62 5.94 -115.06 -0.68 -11.30 16 5 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 6 C 0.44 10.54 7.82 -10.99 -0.09 10.46 16 7 O -0.58 -15.75 15.78 5.55 0.09 -15.67 16 8 N -0.56 -14.49 5.29 -10.96 -0.06 -14.54 16 9 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 10 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 13 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 N -0.71 -7.15 4.31 -47.61 -0.21 -7.35 16 18 C 0.54 6.34 4.39 -10.98 -0.05 6.29 16 19 O -0.53 -7.63 11.20 5.55 0.06 -7.57 16 20 C -0.15 -1.54 3.51 -90.21 -0.32 -1.86 16 21 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 22 C -0.15 -1.52 6.67 -25.17 -0.17 -1.68 16 23 C 0.04 0.42 7.64 37.93 0.29 0.71 16 24 O -0.37 -4.06 11.65 -35.23 -0.41 -4.47 16 25 C 0.06 0.50 7.14 37.93 0.27 0.77 16 26 C -0.15 -1.47 4.82 -90.62 -0.44 -1.90 16 27 C -0.16 -1.55 8.30 -26.73 -0.22 -1.77 16 28 C -0.18 -1.49 9.68 -26.74 -0.26 -1.74 16 29 H 0.07 0.73 6.57 -51.93 -0.34 0.39 16 30 H 0.06 0.46 6.96 -51.93 -0.36 0.10 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.54 5.93 -51.93 -0.31 1.23 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.34 5.53 6.47 -39.29 -0.25 5.28 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.40 3.28 8.46 -40.82 -0.35 2.93 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.10 1.20 6.50 -51.93 -0.34 0.87 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.51 6.87 -51.93 -0.36 0.15 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.11 1.07 8.07 -51.93 -0.42 0.65 16 47 H 0.09 0.97 4.07 -51.93 -0.21 0.76 16 48 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.09 0.68 7.25 -51.93 -0.38 0.30 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -32.70 392.49 -8.44 -41.14 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -7.79 Total: 18.04 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.05 Total: 3.73 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.22 Total: -57.27 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.26 Total: -27.71 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.70 -8.44 -41.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698644127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.980 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds