Wall clock time and date at job start Sat Apr 11 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47066 * 2 1 4 4 N 1.46501 * 109.47002 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00626 * 89.99401 * 4 3 2 6 6 O 1.21275 * 119.99921 * 180.02562 * 5 4 3 7 7 C 1.50695 * 119.99599 * 0.02562 * 5 4 3 8 8 N 1.46498 * 109.47089 * 180.02562 * 7 5 4 9 9 C 1.46467 * 118.66051 * 270.03666 * 8 7 5 10 10 C 1.53029 * 109.71713 * 161.65591 * 9 8 7 11 11 O 1.43244 * 108.80584 * 49.12838 * 10 9 8 12 12 C 1.42965 * 112.98946 * 291.55676 * 11 10 9 13 13 C 1.33871 * 118.73438 * 89.99591 * 8 7 5 14 14 O 1.21288 * 118.83113 * 1.90785 * 13 8 7 15 15 C 1.46505 * 119.99376 * 269.99891 * 4 3 2 16 16 H 1.08999 * 110.88938 * 356.11654 * 15 4 3 17 17 C 1.55150 * 111.00521 * 119.99858 * 15 4 3 18 18 C 1.54323 * 102.94250 * 153.57278 * 17 15 4 19 19 N 1.47025 * 107.27171 * 337.80659 * 18 17 15 20 20 C 1.36932 * 125.64633 * 178.92050 * 19 18 17 21 21 H 1.08001 * 119.99677 * 174.87653 * 20 19 18 22 22 C 1.38816 * 120.00318 * 354.87041 * 20 19 18 23 23 N 1.31609 * 119.99876 * 7.06512 * 22 20 19 24 24 Si 1.86803 * 119.99880 * 187.06373 * 22 20 19 25 25 H 1.48501 * 109.47204 * 94.98862 * 24 22 20 26 26 H 1.48505 * 109.46908 * 214.98839 * 24 22 20 27 27 H 1.48498 * 109.47198 * 334.98591 * 24 22 20 28 28 C 1.47426 * 108.70094 * 358.94232 * 19 18 17 29 29 H 1.08994 * 109.47274 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47141 * 300.01045 * 1 2 3 31 31 H 1.09005 * 109.46896 * 60.00165 * 1 2 3 32 32 H 1.08994 * 109.46621 * 239.99287 * 2 1 3 33 33 H 1.08998 * 109.46350 * 119.99457 * 2 1 3 34 34 H 1.08993 * 109.47466 * 59.99561 * 3 2 1 35 35 H 1.09007 * 109.46909 * 299.99197 * 3 2 1 36 36 H 1.09000 * 109.47528 * 59.99524 * 7 5 4 37 37 H 1.09003 * 109.47469 * 299.99927 * 7 5 4 38 38 H 1.08997 * 109.59049 * 41.52670 * 9 8 7 39 39 H 1.08994 * 109.40889 * 281.67031 * 9 8 7 40 40 H 1.09004 * 109.60431 * 289.29543 * 10 9 8 41 41 H 1.08999 * 109.60368 * 168.96951 * 10 9 8 42 42 H 1.09003 * 109.41293 * 169.69757 * 12 11 10 43 43 H 1.08996 * 109.41144 * 289.56025 * 12 11 10 44 44 H 1.08996 * 110.72418 * 271.93642 * 17 15 4 45 45 H 1.08999 * 110.72342 * 35.03379 * 17 15 4 46 46 H 1.08999 * 109.88458 * 97.22473 * 18 17 15 47 47 H 1.08999 * 109.88373 * 218.38971 * 18 17 15 48 48 H 0.97007 * 120.00575 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.36360 * 265.28865 * 28 19 18 50 50 H 1.08997 * 110.36543 * 142.97084 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1786 1.4425 -1.1680 6 8 5.3913 1.4420 -1.1684 7 6 3.4246 1.4431 -2.4728 8 7 4.3762 1.4424 -3.5867 9 6 4.8341 2.7273 -4.1202 10 6 6.1187 2.5233 -4.9263 11 8 5.9224 1.4388 -5.8413 12 6 5.8000 0.1727 -5.1885 13 6 4.7933 0.2683 -4.0760 14 8 4.3435 -0.7548 -3.6047 15 6 4.2380 1.4423 1.2679 16 1 3.5527 1.5111 2.1127 17 6 5.1432 0.1879 1.3870 18 6 6.2669 0.6611 2.3331 19 7 6.3065 2.1292 2.2638 20 6 7.1532 2.9390 2.9725 21 1 7.1609 4.0035 2.7903 22 6 8.0017 2.3917 3.9252 23 7 8.0941 1.0850 4.0511 24 14 9.0122 3.5102 5.0286 25 1 8.2911 3.7257 6.3087 26 1 10.3281 2.8784 5.3019 27 1 9.2209 4.8157 4.3522 28 6 5.2833 2.5849 1.3053 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9563 -0.8901 36 1 2.7982 2.3333 -2.5301 37 1 2.7975 0.5534 -2.5306 38 1 5.0283 3.4161 -3.2980 39 1 4.0635 3.1462 -4.7673 40 1 6.9409 2.2873 -4.2506 41 1 6.3507 3.4324 -5.4811 42 1 5.4731 -0.5765 -5.9096 43 1 6.7667 -0.1177 -4.7772 44 1 4.5935 -0.6441 1.8271 45 1 5.5468 -0.0904 0.4135 46 1 6.0507 0.3438 3.3533 47 1 7.2224 0.2488 2.0091 48 1 8.6873 0.7024 4.7166 49 1 5.7245 2.7279 0.3188 50 1 4.8226 3.5094 1.6532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713716941.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:43 Heat of formation + Delta-G solvation = -66.098763 kcal Electronic energy + Delta-G solvation = -31728.166018 eV Core-core repulsion = 27564.223069 eV Total energy + Delta-G solvation = -4163.942949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.03798 -39.81249 -37.84873 -36.87163 -35.97013 -35.33726 -33.00235 -31.86018 -30.61911 -29.58041 -28.89778 -27.41427 -26.43486 -25.58528 -24.32070 -23.97664 -21.99959 -21.10098 -19.97705 -19.37166 -18.75892 -17.91437 -17.27552 -17.15805 -16.76943 -16.08372 -15.79154 -15.62742 -14.96504 -14.89021 -14.64158 -14.52199 -14.26467 -13.97387 -13.70257 -13.66509 -13.38570 -13.24426 -12.96269 -12.45170 -12.33952 -12.27162 -12.13177 -11.97944 -11.76892 -11.67377 -11.56388 -11.39845 -10.88770 -10.86549 -10.79893 -10.75868 -10.59362 -10.29025 -10.03943 -9.90575 -9.67619 -9.63466 -9.41448 -8.73376 -8.52198 -8.31153 -6.69508 -5.64056 -2.95526 2.26232 2.56113 2.79428 3.19363 3.44001 3.46857 3.48803 3.51288 4.09060 4.45606 4.49251 4.57968 4.70326 4.74622 4.82980 4.86775 4.95569 5.09502 5.13823 5.17131 5.23547 5.26457 5.32869 5.43398 5.45547 5.49068 5.52033 5.61945 5.64243 5.84668 5.87427 5.90763 5.91835 5.98153 6.15956 6.28994 6.48191 6.54623 6.63530 6.70614 6.78427 7.10478 7.25204 7.59821 7.65922 7.75862 7.86132 7.91329 8.33633 8.42174 9.29816 9.90810 10.58717 11.47977 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.003644 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.123188 B = 7681.143012 C = 9390.668874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.109 3.891 4 N -0.602 5.602 5 C 0.495 3.505 6 O -0.508 6.508 7 C 0.090 3.910 8 N -0.587 5.587 9 C 0.084 3.916 10 C 0.043 3.957 11 O -0.372 6.372 12 C 0.052 3.948 13 C 0.495 3.505 14 O -0.539 6.539 15 C 0.132 3.868 16 H 0.090 0.910 17 C -0.151 4.151 18 C 0.185 3.815 19 N -0.602 5.602 20 C -0.224 4.224 21 H 0.076 0.924 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.126 3.874 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.116 0.884 42 H 0.130 0.870 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.045 0.955 47 H 0.039 0.961 48 H 0.251 0.749 49 H 0.047 0.953 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.901 1.655 -17.827 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C -0.015 4.015 4 N -0.336 5.336 5 C 0.280 3.720 6 O -0.382 6.382 7 C -0.037 4.037 8 N -0.320 5.320 9 C -0.039 4.039 10 C -0.034 4.034 11 O -0.290 6.290 12 C -0.027 4.027 13 C 0.283 3.717 14 O -0.416 6.416 15 C 0.028 3.972 16 H 0.108 0.892 17 C -0.190 4.190 18 C 0.060 3.940 19 N -0.328 5.328 20 C -0.353 4.353 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.001 4.001 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.134 0.866 42 H 0.148 0.852 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.284 1.133 -17.652 22.735 hybrid contribution 0.463 0.536 1.126 1.330 sum -13.820 1.670 -16.526 21.608 Atomic orbital electron populations 1.21701 0.95191 1.01978 1.01761 1.22012 0.95934 0.97250 1.03336 1.21686 0.79819 0.96966 1.03041 1.47982 1.06082 1.73396 1.06130 1.20886 0.88631 0.77162 0.85279 1.90741 1.13407 1.47330 1.86732 1.21484 0.92011 1.05325 0.84858 1.47132 1.45383 1.06405 1.33097 1.22250 0.97493 0.85405 0.98762 1.23017 0.96094 0.91397 0.92927 1.88157 1.93447 1.15020 1.32419 1.22818 0.98169 0.87638 0.94098 1.20964 0.82912 0.83174 0.84673 1.90746 1.56288 1.33758 1.60830 1.22423 0.93302 0.98340 0.83088 0.89173 1.23191 0.98255 0.95893 1.01652 1.21050 0.93940 0.83540 0.95504 1.44320 1.38503 1.02157 1.47846 1.19041 1.13595 0.89961 1.12684 0.90599 1.24804 1.00135 0.95918 0.99606 1.69991 1.41175 1.08787 1.36812 0.86129 0.79355 0.79528 0.80969 1.21705 1.21816 1.20711 1.21903 0.89555 0.93532 0.95095 0.92491 0.92519 0.92726 0.91570 0.91139 0.90013 0.90840 0.87800 0.86787 0.89188 0.90531 0.91084 0.86589 0.85231 0.88847 0.92829 0.91100 0.93671 0.94273 0.93853 0.93544 0.95209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.15 -1.43 6.26 -26.73 -0.17 -1.60 16 3 C 0.11 1.08 5.21 -4.04 -0.02 1.06 16 4 N -0.60 -8.76 2.56 -163.68 -0.42 -9.18 16 5 C 0.49 7.74 7.02 -10.99 -0.08 7.66 16 6 O -0.51 -10.23 12.47 5.56 0.07 -10.16 16 7 C 0.09 1.04 4.35 -5.20 -0.02 1.01 16 8 N -0.59 -7.04 2.33 -175.49 -0.41 -7.45 16 9 C 0.08 0.74 6.66 -4.04 -0.03 0.71 16 10 C 0.04 0.36 6.88 37.17 0.26 0.62 16 11 O -0.37 -3.72 10.86 -35.23 -0.38 -4.11 16 12 C 0.05 0.54 6.98 35.83 0.25 0.79 16 13 C 0.49 6.75 7.58 -11.56 -0.09 6.66 16 14 O -0.54 -9.17 16.36 5.55 0.09 -9.08 16 15 C 0.13 2.43 3.55 -65.78 -0.23 2.20 16 16 H 0.09 1.56 7.86 -51.93 -0.41 1.15 16 17 C -0.15 -3.19 6.33 -24.90 -0.16 -3.35 16 18 C 0.18 4.86 5.38 -3.06 -0.02 4.84 16 19 N -0.60 -16.34 3.39 -170.07 -0.58 -16.92 16 20 C -0.22 -6.54 10.27 -15.06 -0.15 -6.70 16 21 H 0.08 2.14 7.84 -52.49 -0.41 1.72 16 22 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 23 N -0.92 -28.13 10.36 55.49 0.57 -27.56 16 24 Si 0.91 22.73 29.56 -169.99 -5.02 17.70 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.13 2.82 6.58 -2.53 -0.02 2.80 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.72 7.22 -51.93 -0.38 0.35 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 35 H 0.07 0.54 6.44 -51.92 -0.33 0.21 16 36 H 0.10 0.82 7.30 -51.93 -0.38 0.44 16 37 H 0.11 1.34 6.28 -51.93 -0.33 1.01 16 38 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.07 1.62 6.25 -51.93 -0.32 1.30 16 46 H 0.05 1.27 7.30 -51.93 -0.38 0.89 16 47 H 0.04 1.16 7.61 -51.93 -0.40 0.76 16 48 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.05 1.11 5.53 -51.93 -0.29 0.83 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -37.39 391.17 -8.62 -46.01 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -8.24 Total: -0.79 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: -0.20 Total: 15.63 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.83 Total: -61.10 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.22 Total: -23.35 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.39 -8.62 -46.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713716941.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.087 kcal (2) G-P(sol) polarization free energy of solvation -37.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds