Wall clock time and date at job start Sat Apr 11 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47066 * 2 1 4 4 N 1.46501 * 109.47002 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00626 * 89.99401 * 4 3 2 6 6 O 1.21275 * 119.99921 * 180.02562 * 5 4 3 7 7 C 1.50695 * 119.99599 * 0.02562 * 5 4 3 8 8 N 1.46498 * 109.47089 * 180.02562 * 7 5 4 9 9 C 1.46467 * 118.66051 * 270.03666 * 8 7 5 10 10 C 1.53029 * 109.71713 * 161.65591 * 9 8 7 11 11 O 1.43244 * 108.80584 * 49.12838 * 10 9 8 12 12 C 1.42965 * 112.98946 * 291.55676 * 11 10 9 13 13 C 1.33871 * 118.73438 * 89.99591 * 8 7 5 14 14 O 1.21288 * 118.83113 * 1.90785 * 13 8 7 15 15 C 1.46505 * 119.99376 * 269.99891 * 4 3 2 16 16 H 1.08999 * 110.88938 * 356.11654 * 15 4 3 17 17 C 1.55150 * 111.00521 * 119.99858 * 15 4 3 18 18 C 1.54323 * 102.94250 * 153.57278 * 17 15 4 19 19 N 1.47025 * 107.27171 * 337.80659 * 18 17 15 20 20 C 1.36932 * 125.64633 * 178.92050 * 19 18 17 21 21 H 1.08001 * 119.99677 * 174.87653 * 20 19 18 22 22 C 1.38816 * 120.00318 * 354.87041 * 20 19 18 23 23 N 1.31609 * 119.99876 * 7.06512 * 22 20 19 24 24 Si 1.86803 * 119.99880 * 187.06373 * 22 20 19 25 25 H 1.48501 * 109.47204 * 94.98862 * 24 22 20 26 26 H 1.48505 * 109.46908 * 214.98839 * 24 22 20 27 27 H 1.48498 * 109.47198 * 334.98591 * 24 22 20 28 28 C 1.47426 * 108.70094 * 358.94232 * 19 18 17 29 29 H 1.08994 * 109.47274 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47141 * 300.01045 * 1 2 3 31 31 H 1.09005 * 109.46896 * 60.00165 * 1 2 3 32 32 H 1.08994 * 109.46621 * 239.99287 * 2 1 3 33 33 H 1.08998 * 109.46350 * 119.99457 * 2 1 3 34 34 H 1.08993 * 109.47466 * 59.99561 * 3 2 1 35 35 H 1.09007 * 109.46909 * 299.99197 * 3 2 1 36 36 H 1.09000 * 109.47528 * 59.99524 * 7 5 4 37 37 H 1.09003 * 109.47469 * 299.99927 * 7 5 4 38 38 H 1.08997 * 109.59049 * 41.52670 * 9 8 7 39 39 H 1.08994 * 109.40889 * 281.67031 * 9 8 7 40 40 H 1.09004 * 109.60431 * 289.29543 * 10 9 8 41 41 H 1.08999 * 109.60368 * 168.96951 * 10 9 8 42 42 H 1.09003 * 109.41293 * 169.69757 * 12 11 10 43 43 H 1.08996 * 109.41144 * 289.56025 * 12 11 10 44 44 H 1.08996 * 110.72418 * 271.93642 * 17 15 4 45 45 H 1.08999 * 110.72342 * 35.03379 * 17 15 4 46 46 H 1.08999 * 109.88458 * 97.22473 * 18 17 15 47 47 H 1.08999 * 109.88373 * 218.38971 * 18 17 15 48 48 H 0.97007 * 120.00575 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.36360 * 265.28865 * 28 19 18 50 50 H 1.08997 * 110.36543 * 142.97084 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1786 1.4425 -1.1680 6 8 5.3913 1.4420 -1.1684 7 6 3.4246 1.4431 -2.4728 8 7 4.3762 1.4424 -3.5867 9 6 4.8341 2.7273 -4.1202 10 6 6.1187 2.5233 -4.9263 11 8 5.9224 1.4388 -5.8413 12 6 5.8000 0.1727 -5.1885 13 6 4.7933 0.2683 -4.0760 14 8 4.3435 -0.7548 -3.6047 15 6 4.2380 1.4423 1.2679 16 1 3.5527 1.5111 2.1127 17 6 5.1432 0.1879 1.3870 18 6 6.2669 0.6611 2.3331 19 7 6.3065 2.1292 2.2638 20 6 7.1532 2.9390 2.9725 21 1 7.1609 4.0035 2.7903 22 6 8.0017 2.3917 3.9252 23 7 8.0941 1.0850 4.0511 24 14 9.0122 3.5102 5.0286 25 1 8.2911 3.7257 6.3087 26 1 10.3281 2.8784 5.3019 27 1 9.2209 4.8157 4.3522 28 6 5.2833 2.5849 1.3053 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9563 -0.8901 36 1 2.7982 2.3333 -2.5301 37 1 2.7975 0.5534 -2.5306 38 1 5.0283 3.4161 -3.2980 39 1 4.0635 3.1462 -4.7673 40 1 6.9409 2.2873 -4.2506 41 1 6.3507 3.4324 -5.4811 42 1 5.4731 -0.5765 -5.9096 43 1 6.7667 -0.1177 -4.7772 44 1 4.5935 -0.6441 1.8271 45 1 5.5468 -0.0904 0.4135 46 1 6.0507 0.3438 3.3533 47 1 7.2224 0.2488 2.0091 48 1 8.6873 0.7024 4.7166 49 1 5.7245 2.7279 0.3188 50 1 4.8226 3.5094 1.6532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713716941.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:42 Heat of formation + Delta-G solvation = -92.622823 kcal Electronic energy + Delta-G solvation = -31729.316187 eV Core-core repulsion = 27564.223069 eV Total energy + Delta-G solvation = -4165.093118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.05795 -41.02485 -38.79585 -38.52011 -37.15188 -36.34571 -34.59274 -33.31359 -31.55825 -31.09667 -30.33134 -28.96000 -27.33270 -26.89600 -26.01701 -24.86315 -23.02235 -22.43377 -21.95739 -20.43545 -19.87802 -18.96699 -18.77440 -18.26814 -18.14320 -17.11433 -16.98529 -16.68515 -16.54014 -16.05528 -15.95269 -15.65976 -15.52073 -15.27223 -14.91610 -14.58762 -14.48135 -14.34842 -14.23161 -14.07931 -13.80875 -13.67280 -13.25679 -13.00950 -12.96782 -12.81115 -12.77428 -12.67439 -12.40816 -12.28848 -12.11300 -12.03074 -12.02291 -11.87930 -11.75013 -11.60997 -11.45525 -10.84421 -10.71764 -10.54086 -9.81500 -9.65284 -8.87679 -7.87780 -5.23284 1.24187 1.43066 1.46274 1.55284 1.60336 1.66989 2.06475 2.49086 2.72383 3.26297 3.29385 3.46539 3.67622 3.74883 3.87733 3.93954 3.99988 4.04736 4.10532 4.17206 4.18604 4.21283 4.33242 4.37747 4.43206 4.47597 4.57499 4.61264 4.68358 4.70090 4.74610 4.79135 4.88809 4.94648 4.98389 5.06509 5.11955 5.26450 5.28585 5.40244 5.49215 5.58089 5.65000 5.71133 5.74045 6.15352 6.19406 6.44618 6.86844 7.05552 7.21862 7.73604 8.40542 9.23556 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.003644 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.123188 B = 7681.143012 C = 9390.668874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.143 4.143 3 C 0.103 3.897 4 N -0.598 5.598 5 C 0.488 3.512 6 O -0.562 6.562 7 C 0.095 3.905 8 N -0.589 5.589 9 C 0.080 3.920 10 C 0.039 3.961 11 O -0.373 6.373 12 C 0.056 3.944 13 C 0.483 3.517 14 O -0.583 6.583 15 C 0.153 3.847 16 H 0.111 0.889 17 C -0.135 4.135 18 C 0.197 3.803 19 N -0.622 5.622 20 C -0.244 4.244 21 H 0.083 0.917 22 C -0.067 4.067 23 N -0.953 5.953 24 Si 0.983 3.017 25 H -0.282 1.282 26 H -0.296 1.296 27 H -0.267 1.267 28 C 0.125 3.875 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.152 0.848 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.049 0.951 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.020 0.980 47 H -0.011 1.011 48 H 0.247 0.753 49 H 0.032 0.968 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.517 3.920 -19.020 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.182 4.182 3 C -0.018 4.018 4 N -0.330 5.330 5 C 0.276 3.724 6 O -0.440 6.440 7 C -0.031 4.031 8 N -0.321 5.321 9 C -0.042 4.042 10 C -0.037 4.037 11 O -0.291 6.291 12 C -0.023 4.023 13 C 0.273 3.727 14 O -0.464 6.464 15 C 0.048 3.952 16 H 0.129 0.871 17 C -0.175 4.175 18 C 0.072 3.928 19 N -0.349 5.349 20 C -0.373 4.373 21 H 0.100 0.900 22 C -0.260 4.260 23 N -0.602 5.602 24 Si 0.811 3.189 25 H -0.208 1.208 26 H -0.223 1.223 27 H -0.191 1.191 28 C 0.000 4.000 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.169 0.831 37 H 0.134 0.866 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.068 0.932 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.038 0.962 47 H 0.007 0.993 48 H 0.056 0.944 49 H 0.050 0.950 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.966 3.452 -18.883 25.619 hybrid contribution 1.299 -0.148 1.451 1.953 sum -15.667 3.305 -17.432 23.669 Atomic orbital electron populations 1.21660 0.92988 1.02322 1.03067 1.21950 0.97739 0.96775 1.01703 1.22068 0.76468 0.97594 1.05694 1.48012 1.07980 1.72662 1.04340 1.21726 0.88276 0.75662 0.86736 1.90727 1.15969 1.49730 1.87580 1.21603 0.91632 1.07539 0.82298 1.47355 1.44993 1.07096 1.32647 1.22504 0.98527 0.83944 0.99199 1.23191 0.95436 0.92147 0.92955 1.88161 1.93333 1.14995 1.32581 1.22823 0.97204 0.88540 0.93773 1.21549 0.82946 0.83129 0.85126 1.90713 1.57961 1.35268 1.62443 1.22029 0.92801 0.94454 0.85914 0.87113 1.22940 0.97352 0.97961 0.99206 1.20724 0.93429 0.83649 0.95044 1.44631 1.39505 1.02350 1.48376 1.19472 1.14188 0.90609 1.13028 0.89967 1.25740 1.01650 0.97432 1.01148 1.70231 1.41970 1.10730 1.37290 0.84993 0.77159 0.77921 0.78851 1.20826 1.22258 1.19120 1.21980 0.89505 0.95454 0.93110 0.92731 0.91663 0.90927 0.92969 0.93153 0.88373 0.87171 0.83105 0.86636 0.89275 0.87127 0.93243 0.83292 0.83367 0.89093 0.90750 0.93146 0.96222 0.99270 0.94388 0.94994 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.14 -2.47 6.26 30.60 0.19 -2.28 16 3 C 0.10 1.69 5.21 86.38 0.45 2.14 16 4 N -0.60 -16.34 2.56 -790.15 -2.02 -18.36 16 5 C 0.49 14.80 7.02 87.66 0.62 15.42 16 6 O -0.56 -23.18 12.47 -3.02 -0.04 -23.22 16 7 C 0.10 1.97 4.35 85.63 0.37 2.35 16 8 N -0.59 -13.23 2.33 -828.02 -1.93 -15.16 16 9 C 0.08 1.22 6.66 86.40 0.57 1.79 16 10 C 0.04 0.61 6.88 71.99 0.50 1.10 16 11 O -0.37 -6.88 10.86 -148.98 -1.62 -8.49 16 12 C 0.06 1.15 6.98 71.12 0.50 1.64 16 13 C 0.48 13.06 7.58 87.69 0.66 13.72 16 14 O -0.58 -20.16 16.36 -3.06 -0.05 -20.21 16 15 C 0.15 5.53 3.55 46.38 0.16 5.70 16 16 H 0.11 3.60 7.86 -2.39 -0.02 3.58 16 17 C -0.14 -5.91 6.33 31.78 0.20 -5.71 16 18 C 0.20 10.93 5.38 86.73 0.47 11.40 16 19 N -0.62 -34.83 3.39 -691.98 -2.35 -37.18 16 20 C -0.24 -14.54 10.27 84.04 0.86 -13.67 16 21 H 0.08 4.65 7.84 -2.91 -0.02 4.63 16 22 C -0.07 -4.00 5.48 84.86 0.46 -3.54 16 23 N -0.95 -60.72 10.36 21.65 0.22 -60.49 16 24 Si 0.98 47.44 29.56 68.60 2.03 49.47 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 28 C 0.13 5.62 6.58 86.85 0.57 6.19 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.05 1.06 7.22 -2.39 -0.02 1.04 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.37 7.93 -2.39 -0.02 1.35 16 35 H 0.11 1.05 6.44 -2.38 -0.02 1.03 16 36 H 0.15 1.66 7.30 -2.39 -0.02 1.64 16 37 H 0.12 2.45 6.28 -2.39 -0.01 2.44 16 38 H 0.09 1.41 8.13 -2.39 -0.02 1.39 16 39 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 0.98 8.10 -2.38 -0.02 0.96 16 41 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.15 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 45 H 0.05 2.42 6.25 -2.39 -0.01 2.40 16 46 H 0.02 1.17 7.30 -2.39 -0.02 1.15 16 47 H -0.01 -0.70 7.61 -2.39 -0.02 -0.72 16 48 H 0.25 15.19 8.31 -92.70 -0.77 14.41 16 49 H 0.03 1.56 5.53 -2.39 -0.01 1.55 16 50 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -87.40 391.17 2.48 -84.92 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.93 Total: 13.42 kcal Atomic # 6 Polarization: 27.99 SS G_CDS: 7.31 Total: 35.30 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -6.08 Total: -131.19 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -1.71 Total: -51.92 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -87.40 2.48 -84.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713716941.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.704 kcal (2) G-P(sol) polarization free energy of solvation -87.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds