Wall clock time and date at job start Sat Apr 11 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47212 * 2 1 4 4 N 1.46504 * 109.47142 * 174.72259 * 3 2 1 5 5 C 1.34775 * 119.99355 * 263.68806 * 4 3 2 6 6 O 1.21294 * 119.99454 * 175.30553 * 5 4 3 7 7 C 1.50691 * 120.00517 * 355.30535 * 5 4 3 8 8 H 1.08994 * 109.87466 * 312.86589 * 7 5 4 9 9 C 1.54101 * 109.87864 * 73.87888 * 7 5 4 10 10 C 1.54805 * 104.19177 * 121.45553 * 9 7 5 11 11 C 1.54998 * 102.09223 * 20.87559 * 10 9 7 12 12 H 1.08998 * 110.61631 * 81.64136 * 11 10 9 13 13 C 1.50699 * 110.62067 * 204.47601 * 11 10 9 14 14 N 1.34779 * 120.00244 * 295.00332 * 13 11 10 15 15 O 1.21281 * 119.99810 * 114.99807 * 13 11 10 16 16 O 1.43747 * 109.87839 * 191.70472 * 7 5 4 17 17 C 1.46491 * 119.99929 * 83.68923 * 4 3 2 18 18 H 1.09003 * 110.64442 * 19.08046 * 17 4 3 19 19 C 1.55156 * 110.71954 * 255.73982 * 17 4 3 20 20 C 1.54915 * 101.58154 * 277.13753 * 19 17 4 21 21 N 1.47422 * 104.83487 * 322.99298 * 20 19 17 22 22 C 1.36933 * 125.64875 * 204.16619 * 21 20 19 23 23 H 1.08001 * 119.99858 * 179.97438 * 22 21 20 24 24 C 1.38813 * 120.00199 * 359.95186 * 22 21 20 25 25 N 1.31616 * 119.99728 * 0.02562 * 24 22 21 26 26 Si 1.86790 * 120.00141 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47502 * 90.00131 * 26 24 22 28 28 H 1.48506 * 109.47355 * 210.00168 * 26 24 22 29 29 H 1.48497 * 109.47321 * 329.99907 * 26 24 22 30 30 C 1.47023 * 108.70129 * 24.12369 * 21 20 19 31 31 H 1.08998 * 109.46806 * 299.99824 * 1 2 3 32 32 H 1.08998 * 109.47105 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47415 * 60.00027 * 1 2 3 34 34 H 1.09005 * 109.46993 * 120.00223 * 2 1 3 35 35 H 1.08998 * 109.47221 * 239.99833 * 2 1 3 36 36 H 1.09002 * 109.47312 * 294.72405 * 3 2 1 37 37 H 1.08997 * 109.47280 * 54.71932 * 3 2 1 38 38 H 1.09002 * 110.48569 * 240.12849 * 9 7 5 39 39 H 1.08994 * 110.49096 * 2.64251 * 9 7 5 40 40 H 1.08999 * 110.91466 * 139.07322 * 10 9 7 41 41 H 1.09000 * 110.90727 * 262.64559 * 10 9 7 42 42 H 0.96995 * 120.00020 * 359.97438 * 14 13 11 43 43 H 0.97000 * 119.99806 * 179.97438 * 14 13 11 44 44 H 1.08991 * 111.00857 * 35.21474 * 19 17 4 45 45 H 1.09006 * 111.00529 * 159.06905 * 19 17 4 46 46 H 1.08998 * 110.36948 * 204.14996 * 20 19 17 47 47 H 1.09005 * 110.36382 * 81.83121 * 20 19 17 48 48 H 0.97001 * 120.00117 * 179.97438 * 25 24 22 49 49 H 1.08999 * 109.88152 * 239.52529 * 30 21 20 50 50 H 1.08998 * 110.01271 * 118.43217 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4995 1.4444 0.1270 5 6 4.0703 1.6091 1.3368 6 8 5.2745 1.5258 1.4555 7 6 3.2125 1.8967 2.5419 8 1 2.4952 2.6830 2.3070 9 6 2.4669 0.6184 2.9715 10 6 2.9217 0.3867 4.4329 11 6 3.4161 1.7963 4.8465 12 1 2.5766 2.4268 5.1393 13 6 4.4204 1.6992 5.9659 14 7 4.0422 1.2313 7.1719 15 8 5.5690 2.0421 5.7814 16 8 4.0401 2.3000 3.6459 17 6 4.3384 1.2673 -1.0608 18 1 3.7718 1.4823 -1.9669 19 6 4.9305 -0.1661 -1.1059 20 6 6.1613 -0.0236 -0.1761 21 7 6.6864 1.3265 -0.4493 22 6 7.9764 1.7377 -0.2445 23 1 8.2632 2.7524 -0.4777 24 6 8.9154 0.8503 0.2633 25 7 8.5658 -0.3864 0.5475 26 14 10.6749 1.4114 0.5434 27 1 10.8087 1.9532 1.9196 28 1 11.5952 0.2582 0.3738 29 1 11.0199 2.4687 -0.4406 30 6 5.5959 2.1582 -0.9790 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.7559 1.9283 -0.9335 37 1 1.6016 1.9829 0.8389 38 1 1.3887 0.7726 2.9274 39 1 2.7570 -0.2225 2.3416 40 1 2.0849 0.0699 5.0553 41 1 3.7336 -0.3393 4.4771 42 1 3.1235 0.9573 7.3195 43 1 4.6888 1.1685 7.8923 44 1 4.2229 -0.8938 -0.7087 45 1 5.2345 -0.4316 -2.1185 46 1 6.9096 -0.7780 -0.4191 47 1 5.8600 -0.1095 0.8679 48 1 9.2220 -1.0066 0.9020 49 1 5.8569 2.5232 -1.9723 50 1 5.4109 3.0000 -0.3117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714877511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:51 Heat of formation + Delta-G solvation = -48.841379 kcal Electronic energy + Delta-G solvation = -32621.621287 eV Core-core repulsion = 28458.426675 eV Total energy + Delta-G solvation = -4163.194612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71326 -39.59880 -38.11928 -35.96161 -35.84086 -33.86582 -32.83682 -32.14780 -31.58068 -29.94438 -28.80868 -27.24683 -25.91751 -24.75610 -24.03582 -22.25454 -21.87083 -20.69891 -20.53675 -19.83877 -18.38732 -17.69987 -17.28755 -16.58373 -16.55318 -16.33856 -15.90001 -15.17782 -14.85451 -14.72782 -14.37146 -14.29917 -14.19922 -13.62821 -13.57341 -13.50412 -13.38618 -12.75507 -12.40112 -12.31237 -12.10930 -11.97789 -11.83251 -11.57977 -11.46503 -11.39003 -11.21832 -11.11548 -10.74736 -10.63618 -10.60525 -10.55700 -10.25831 -9.86533 -9.79648 -9.78474 -9.64742 -9.52955 -9.26041 -8.64269 -8.30672 -7.82357 -6.36517 -5.28571 -2.64331 2.58216 2.86921 3.26130 3.39227 3.62200 3.67702 3.68969 4.05602 4.28331 4.52719 4.63005 4.74593 4.78562 4.80479 4.84988 4.95760 5.04256 5.17250 5.23326 5.33404 5.38219 5.44696 5.54419 5.55068 5.57694 5.70851 5.75097 5.80830 5.82426 5.89271 5.91662 6.00311 6.16197 6.23598 6.43062 6.57213 6.63906 6.71736 6.74447 6.86255 6.94617 7.20376 7.33823 7.89334 7.94062 8.07343 8.21485 8.22923 8.72728 9.01506 9.59829 10.21794 10.88370 11.75622 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008445 B = 0.005476 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.842245 B = 5111.557049 C = 7735.057032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.151 4.151 3 C 0.112 3.888 4 N -0.610 5.610 5 C 0.473 3.527 6 O -0.416 6.416 7 C 0.061 3.939 8 H 0.086 0.914 9 C -0.143 4.143 10 C -0.142 4.142 11 C 0.057 3.943 12 H 0.096 0.904 13 C 0.518 3.482 14 N -0.856 5.856 15 O -0.503 6.503 16 O -0.313 6.313 17 C 0.138 3.862 18 H 0.081 0.919 19 C -0.159 4.159 20 C 0.160 3.840 21 N -0.576 5.576 22 C -0.200 4.200 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.907 3.093 27 H -0.291 1.291 28 H -0.294 1.294 29 H -0.284 1.284 30 C 0.139 3.861 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.398 0.602 43 H 0.404 0.596 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.034 0.966 48 H 0.245 0.755 49 H 0.020 0.980 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.818 -0.271 6.536 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.190 4.190 3 C -0.012 4.012 4 N -0.348 5.348 5 C 0.256 3.744 6 O -0.282 6.282 7 C -0.001 4.001 8 H 0.104 0.896 9 C -0.181 4.181 10 C -0.180 4.180 11 C -0.005 4.005 12 H 0.113 0.887 13 C 0.300 3.700 14 N -0.423 5.423 15 O -0.375 6.375 16 O -0.229 6.229 17 C 0.035 3.965 18 H 0.099 0.901 19 C -0.199 4.199 20 C 0.035 3.965 21 N -0.301 5.301 22 C -0.329 4.329 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.739 3.261 27 H -0.219 1.219 28 H -0.220 1.220 29 H -0.210 1.210 30 C 0.012 3.988 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.226 0.774 43 H 0.236 0.764 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.110 0.890 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.037 0.963 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -22.937 0.049 6.345 23.798 hybrid contribution 0.201 0.082 0.675 0.709 sum -22.736 0.131 7.021 23.796 Atomic orbital electron populations 1.21709 0.95540 1.01734 1.01645 1.22179 0.95571 0.97796 1.03406 1.21577 0.80782 0.96490 1.02381 1.47828 1.05353 1.74829 1.06836 1.20212 0.89676 0.81067 0.83440 1.91207 1.12413 1.41287 1.83260 1.22735 0.92082 0.96693 0.88569 0.89603 1.23053 1.00387 0.98254 0.96388 1.23121 1.02128 0.96353 0.96386 1.22968 0.94106 0.95888 0.87548 0.88659 1.20209 0.89100 0.77267 0.83401 1.43713 1.15499 1.69705 1.13406 1.90881 1.19400 1.45688 1.81486 1.89213 1.47023 1.74651 1.12040 1.22056 0.91524 0.97478 0.85455 0.90110 1.23533 1.00446 0.94449 1.01477 1.22026 0.91189 0.88695 0.94555 1.44142 1.04408 1.07497 1.74027 1.18960 0.83693 0.95631 1.34605 0.91243 1.24637 0.97894 0.96209 1.02059 1.69821 1.32093 1.04109 1.51148 0.86164 0.85020 0.76979 0.77963 1.21906 1.22046 1.21037 1.21360 0.87803 0.93631 0.95998 0.92847 0.92655 0.92689 0.91200 0.91300 0.90930 0.90924 0.89614 0.89057 0.89263 0.89448 0.77370 0.76437 0.92681 0.91904 0.88957 0.94850 0.94419 0.96286 0.96270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.60 16 2 C -0.15 -1.37 6.01 -26.73 -0.16 -1.53 16 3 C 0.11 1.15 4.99 -4.04 -0.02 1.13 16 4 N -0.61 -9.62 2.52 -164.03 -0.41 -10.03 16 5 C 0.47 9.07 5.89 -10.99 -0.06 9.00 16 6 O -0.42 -10.92 9.98 -13.75 -0.14 -11.06 16 7 C 0.06 0.89 2.95 -27.31 -0.08 0.81 16 8 H 0.09 1.00 6.92 -51.93 -0.36 0.64 16 9 C -0.14 -1.48 4.86 -25.21 -0.12 -1.61 16 10 C -0.14 -1.41 6.57 -24.72 -0.16 -1.57 16 11 C 0.06 0.70 3.76 -26.83 -0.10 0.60 16 12 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 13 C 0.52 7.46 7.48 -10.98 -0.08 7.38 16 14 N -0.86 -7.13 8.86 31.22 0.28 -6.85 16 15 O -0.50 -10.77 17.40 -13.51 -0.24 -11.01 16 16 O -0.31 -5.74 10.04 -64.20 -0.64 -6.39 16 17 C 0.14 2.50 3.69 -66.10 -0.24 2.26 16 18 H 0.08 1.20 7.93 -51.93 -0.41 0.78 16 19 C -0.16 -3.20 6.73 -24.58 -0.17 -3.37 16 20 C 0.16 4.29 4.94 -2.53 -0.01 4.28 16 21 N -0.58 -16.37 2.23 -170.07 -0.38 -16.75 16 22 C -0.20 -6.27 10.27 -15.06 -0.15 -6.42 16 23 H 0.07 2.13 7.83 -52.49 -0.41 1.72 16 24 C -0.01 -0.43 5.49 -17.43 -0.10 -0.52 16 25 N -0.92 -29.92 10.09 55.49 0.56 -29.36 16 26 Si 0.91 24.88 29.55 -169.99 -5.02 19.86 16 27 H -0.29 -8.18 7.11 56.52 0.40 -7.78 16 28 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 29 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 30 C 0.14 3.25 5.98 -3.06 -0.02 3.23 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.69 5.23 -51.93 -0.27 0.42 16 35 H 0.07 0.70 8.02 -51.93 -0.42 0.29 16 36 H 0.07 0.66 7.99 -51.93 -0.42 0.24 16 37 H 0.07 0.62 5.69 -51.93 -0.30 0.32 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.08 5.62 -51.93 -0.29 0.79 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 42 H 0.40 1.66 8.83 -40.82 -0.36 1.30 16 43 H 0.40 3.09 8.93 -40.82 -0.36 2.72 16 44 H 0.05 0.99 8.02 -51.93 -0.42 0.58 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.09 2.80 5.87 -51.93 -0.30 2.49 16 47 H 0.03 1.01 5.59 -51.93 -0.29 0.71 16 48 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.02 0.49 7.06 -51.93 -0.37 0.12 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -43.63 382.54 -9.26 -52.89 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.91 Total: -0.13 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: -1.12 Total: 13.07 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.04 Total: -62.99 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.02 Total: -28.45 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.02 Total: 19.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -43.63 -9.26 -52.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714877511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.046 kcal (2) G-P(sol) polarization free energy of solvation -43.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds