Wall clock time and date at job start Sat Apr 11 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47212 * 2 1 4 4 N 1.46504 * 109.47142 * 174.72259 * 3 2 1 5 5 C 1.34775 * 119.99355 * 263.68806 * 4 3 2 6 6 O 1.21294 * 119.99454 * 175.30553 * 5 4 3 7 7 C 1.50691 * 120.00517 * 355.30535 * 5 4 3 8 8 H 1.08994 * 109.87466 * 312.86589 * 7 5 4 9 9 C 1.54101 * 109.87864 * 73.87888 * 7 5 4 10 10 C 1.54805 * 104.19177 * 121.45553 * 9 7 5 11 11 C 1.54998 * 102.09223 * 20.87559 * 10 9 7 12 12 H 1.08998 * 110.61631 * 81.64136 * 11 10 9 13 13 C 1.50699 * 110.62067 * 204.47601 * 11 10 9 14 14 N 1.34779 * 120.00244 * 295.00332 * 13 11 10 15 15 O 1.21281 * 119.99810 * 114.99807 * 13 11 10 16 16 O 1.43747 * 109.87839 * 191.70472 * 7 5 4 17 17 C 1.46491 * 119.99929 * 83.68923 * 4 3 2 18 18 H 1.09003 * 110.64442 * 19.08046 * 17 4 3 19 19 C 1.55156 * 110.71954 * 255.73982 * 17 4 3 20 20 C 1.54915 * 101.58154 * 277.13753 * 19 17 4 21 21 N 1.47422 * 104.83487 * 322.99298 * 20 19 17 22 22 C 1.36933 * 125.64875 * 204.16619 * 21 20 19 23 23 H 1.08001 * 119.99858 * 179.97438 * 22 21 20 24 24 C 1.38813 * 120.00199 * 359.95186 * 22 21 20 25 25 N 1.31616 * 119.99728 * 0.02562 * 24 22 21 26 26 Si 1.86790 * 120.00141 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47502 * 90.00131 * 26 24 22 28 28 H 1.48506 * 109.47355 * 210.00168 * 26 24 22 29 29 H 1.48497 * 109.47321 * 329.99907 * 26 24 22 30 30 C 1.47023 * 108.70129 * 24.12369 * 21 20 19 31 31 H 1.08998 * 109.46806 * 299.99824 * 1 2 3 32 32 H 1.08998 * 109.47105 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47415 * 60.00027 * 1 2 3 34 34 H 1.09005 * 109.46993 * 120.00223 * 2 1 3 35 35 H 1.08998 * 109.47221 * 239.99833 * 2 1 3 36 36 H 1.09002 * 109.47312 * 294.72405 * 3 2 1 37 37 H 1.08997 * 109.47280 * 54.71932 * 3 2 1 38 38 H 1.09002 * 110.48569 * 240.12849 * 9 7 5 39 39 H 1.08994 * 110.49096 * 2.64251 * 9 7 5 40 40 H 1.08999 * 110.91466 * 139.07322 * 10 9 7 41 41 H 1.09000 * 110.90727 * 262.64559 * 10 9 7 42 42 H 0.96995 * 120.00020 * 359.97438 * 14 13 11 43 43 H 0.97000 * 119.99806 * 179.97438 * 14 13 11 44 44 H 1.08991 * 111.00857 * 35.21474 * 19 17 4 45 45 H 1.09006 * 111.00529 * 159.06905 * 19 17 4 46 46 H 1.08998 * 110.36948 * 204.14996 * 20 19 17 47 47 H 1.09005 * 110.36382 * 81.83121 * 20 19 17 48 48 H 0.97001 * 120.00117 * 179.97438 * 25 24 22 49 49 H 1.08999 * 109.88152 * 239.52529 * 30 21 20 50 50 H 1.08998 * 110.01271 * 118.43217 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4995 1.4444 0.1270 5 6 4.0703 1.6091 1.3368 6 8 5.2745 1.5258 1.4555 7 6 3.2125 1.8967 2.5419 8 1 2.4952 2.6830 2.3070 9 6 2.4669 0.6184 2.9715 10 6 2.9217 0.3867 4.4329 11 6 3.4161 1.7963 4.8465 12 1 2.5766 2.4268 5.1393 13 6 4.4204 1.6992 5.9659 14 7 4.0422 1.2313 7.1719 15 8 5.5690 2.0421 5.7814 16 8 4.0401 2.3000 3.6459 17 6 4.3384 1.2673 -1.0608 18 1 3.7718 1.4823 -1.9669 19 6 4.9305 -0.1661 -1.1059 20 6 6.1613 -0.0236 -0.1761 21 7 6.6864 1.3265 -0.4493 22 6 7.9764 1.7377 -0.2445 23 1 8.2632 2.7524 -0.4777 24 6 8.9154 0.8503 0.2633 25 7 8.5658 -0.3864 0.5475 26 14 10.6749 1.4114 0.5434 27 1 10.8087 1.9532 1.9196 28 1 11.5952 0.2582 0.3738 29 1 11.0199 2.4687 -0.4406 30 6 5.5959 2.1582 -0.9790 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.7559 1.9283 -0.9335 37 1 1.6016 1.9829 0.8389 38 1 1.3887 0.7726 2.9274 39 1 2.7570 -0.2225 2.3416 40 1 2.0849 0.0699 5.0553 41 1 3.7336 -0.3393 4.4771 42 1 3.1235 0.9573 7.3195 43 1 4.6888 1.1685 7.8923 44 1 4.2229 -0.8938 -0.7087 45 1 5.2345 -0.4316 -2.1185 46 1 6.9096 -0.7780 -0.4191 47 1 5.8600 -0.1095 0.8679 48 1 9.2220 -1.0066 0.9020 49 1 5.8569 2.5232 -1.9723 50 1 5.4109 3.0000 -0.3117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714877511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:50 Heat of formation + Delta-G solvation = -84.411152 kcal Electronic energy + Delta-G solvation = -32623.163708 eV Core-core repulsion = 28458.426675 eV Total energy + Delta-G solvation = -4164.737033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.91904 -40.87632 -39.37343 -37.66833 -37.08758 -34.91308 -34.51054 -33.14581 -33.02482 -31.30933 -30.57603 -28.94771 -26.82787 -26.54375 -25.54710 -23.18909 -22.75079 -22.10367 -21.78421 -21.58072 -19.68986 -18.88256 -18.63621 -18.29401 -17.62460 -17.56979 -17.11610 -16.80486 -16.22273 -16.04882 -15.80796 -15.58098 -15.41934 -15.32076 -14.86935 -14.60167 -14.40892 -14.07154 -13.81462 -13.71974 -13.37645 -13.21689 -12.91882 -12.88741 -12.78916 -12.74531 -12.62182 -12.48687 -12.40396 -12.06914 -12.00995 -11.80629 -11.75182 -11.63225 -11.37354 -11.31457 -11.18310 -10.86623 -10.75742 -10.66182 -9.95909 -9.35660 -8.63650 -7.67292 -5.04476 1.35148 1.42846 1.48153 1.50316 1.79144 1.95558 2.32914 2.52214 3.07299 3.37038 3.40506 3.63762 3.76702 3.85416 3.89526 3.96219 4.01407 4.07613 4.15732 4.21151 4.31985 4.33462 4.41674 4.54497 4.60577 4.72358 4.74511 4.78447 4.83589 4.90303 4.92981 5.00876 5.03914 5.07114 5.13352 5.19344 5.41349 5.42065 5.46484 5.60870 5.68989 5.85232 5.89302 5.93155 6.00844 6.42869 6.43938 6.67538 7.22471 7.31655 7.64383 7.95430 8.58931 9.34171 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008445 B = 0.005476 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.842245 B = 5111.557049 C = 7735.057032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.147 4.147 3 C 0.104 3.896 4 N -0.602 5.602 5 C 0.463 3.537 6 O -0.507 6.507 7 C 0.061 3.939 8 H 0.125 0.875 9 C -0.133 4.133 10 C -0.134 4.134 11 C 0.051 3.949 12 H 0.149 0.851 13 C 0.508 3.492 14 N -0.823 5.823 15 O -0.593 6.593 16 O -0.376 6.376 17 C 0.153 3.847 18 H 0.132 0.868 19 C -0.140 4.140 20 C 0.168 3.832 21 N -0.594 5.594 22 C -0.217 4.217 23 H 0.065 0.935 24 C -0.076 4.076 25 N -0.948 5.948 26 Si 0.971 3.029 27 H -0.303 1.303 28 H -0.286 1.286 29 H -0.264 1.264 30 C 0.134 3.866 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.072 0.928 40 H 0.150 0.850 41 H 0.047 0.953 42 H 0.424 0.576 43 H 0.409 0.591 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.048 0.952 47 H -0.003 1.003 48 H 0.238 0.762 49 H 0.029 0.971 50 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.205 -0.002 6.410 30.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.186 4.186 3 C -0.017 4.017 4 N -0.338 5.338 5 C 0.249 3.751 6 O -0.379 6.379 7 C 0.000 4.000 8 H 0.142 0.858 9 C -0.170 4.170 10 C -0.172 4.172 11 C -0.009 4.009 12 H 0.166 0.834 13 C 0.293 3.707 14 N -0.390 5.390 15 O -0.472 6.472 16 O -0.294 6.294 17 C 0.048 3.952 18 H 0.150 0.850 19 C -0.180 4.180 20 C 0.043 3.957 21 N -0.318 5.318 22 C -0.347 4.347 23 H 0.083 0.917 24 C -0.267 4.267 25 N -0.599 5.599 26 Si 0.800 3.200 27 H -0.232 1.232 28 H -0.212 1.212 29 H -0.189 1.189 30 C 0.008 3.992 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.162 0.838 39 H 0.091 0.909 40 H 0.168 0.832 41 H 0.066 0.934 42 H 0.257 0.743 43 H 0.241 0.759 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.014 0.986 48 H 0.048 0.952 49 H 0.046 0.954 50 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -28.487 0.298 6.223 29.160 hybrid contribution 1.765 0.034 0.800 1.938 sum -26.722 0.331 7.023 27.631 Atomic orbital electron populations 1.21661 0.92984 1.02315 1.02992 1.22116 0.97604 0.96393 1.02445 1.22027 0.76775 0.98084 1.04846 1.47940 1.07702 1.73089 1.05117 1.21314 0.89344 0.78947 0.85491 1.91180 1.16334 1.45596 1.84794 1.22958 0.91240 0.99938 0.85869 0.85752 1.23138 1.02923 0.95258 0.95701 1.23181 1.02748 0.93834 0.97412 1.23418 0.94172 0.98204 0.85113 0.83368 1.20903 0.88404 0.76147 0.85238 1.43449 1.16992 1.66940 1.11571 1.90844 1.23030 1.50166 1.83198 1.89168 1.49857 1.75714 1.14706 1.21943 0.90497 0.94255 0.88457 0.85012 1.23312 0.97805 0.96717 1.00166 1.21666 0.92664 0.87100 0.94271 1.44380 1.04643 1.08998 1.73799 1.19319 0.85717 0.95473 1.34196 0.91724 1.25493 1.02035 0.96533 1.02640 1.70135 1.32801 1.04978 1.52034 0.85165 0.80354 0.77156 0.77299 1.23151 1.21206 1.18894 1.21542 0.89102 0.93532 0.95039 0.90908 0.92525 0.91966 0.92106 0.92586 0.88611 0.88212 0.83841 0.90948 0.83210 0.93433 0.74349 0.75880 0.90438 0.90893 0.93412 0.98567 0.95248 0.95371 0.98646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.91 71.98 0.71 -0.35 16 2 C -0.15 -2.02 6.01 30.59 0.18 -1.84 16 3 C 0.10 1.64 4.99 86.38 0.43 2.07 16 4 N -0.60 -17.90 2.52 -791.26 -1.99 -19.89 16 5 C 0.46 17.98 5.89 87.65 0.52 18.50 16 6 O -0.51 -28.55 9.98 15.38 0.15 -28.40 16 7 C 0.06 1.67 2.95 30.22 0.09 1.76 16 8 H 0.13 2.36 6.92 -2.39 -0.02 2.35 16 9 C -0.13 -2.26 4.86 31.58 0.15 -2.11 16 10 C -0.13 -2.27 6.57 31.89 0.21 -2.06 16 11 C 0.05 1.19 3.76 30.53 0.11 1.30 16 12 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 13 C 0.51 14.89 7.48 87.66 0.66 15.54 16 14 N -0.82 -12.50 8.86 -173.53 -1.54 -14.04 16 15 O -0.59 -27.51 17.40 15.20 0.26 -27.25 16 16 O -0.38 -14.10 10.04 -121.28 -1.22 -15.32 16 17 C 0.15 5.31 3.69 46.18 0.17 5.48 16 18 H 0.13 3.33 7.93 -2.39 -0.02 3.31 16 19 C -0.14 -5.63 6.73 31.99 0.22 -5.41 16 20 C 0.17 9.58 4.94 86.86 0.43 10.01 16 21 N -0.59 -35.71 2.23 -691.98 -1.54 -37.26 16 22 C -0.22 -14.43 10.27 84.03 0.86 -13.56 16 23 H 0.06 4.20 7.83 -2.91 -0.02 4.18 16 24 C -0.08 -5.04 5.49 84.86 0.47 -4.58 16 25 N -0.95 -65.80 10.09 21.65 0.22 -65.58 16 26 Si 0.97 53.94 29.55 68.60 2.03 55.97 16 27 H -0.30 -17.30 7.11 99.48 0.71 -16.60 16 28 H -0.29 -15.36 7.11 99.48 0.71 -14.66 16 29 H -0.26 -13.65 7.11 99.48 0.71 -12.95 16 30 C 0.13 6.42 5.98 86.73 0.52 6.94 16 31 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.06 0.98 5.23 -2.38 -0.01 0.97 16 35 H 0.06 0.93 8.02 -2.39 -0.02 0.91 16 36 H 0.10 1.16 7.99 -2.39 -0.02 1.14 16 37 H 0.10 1.08 5.69 -2.39 -0.01 1.07 16 38 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 1.56 5.62 -2.39 -0.01 1.55 16 40 H 0.15 0.68 8.14 -2.39 -0.02 0.67 16 41 H 0.05 1.19 8.05 -2.39 -0.02 1.17 16 42 H 0.42 2.03 8.83 -92.71 -0.82 1.21 16 43 H 0.41 5.95 8.93 -92.71 -0.83 5.12 16 44 H 0.08 2.73 8.02 -2.39 -0.02 2.71 16 45 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 46 H 0.05 3.12 5.87 -2.39 -0.01 3.11 16 47 H 0.00 -0.21 5.59 -2.38 -0.01 -0.22 16 48 H 0.24 16.03 8.31 -92.71 -0.77 15.26 16 49 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.00 -0.23 7.06 -2.39 -0.02 -0.24 16 Total: -1.00 -113.79 382.54 1.43 -112.36 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -0.67 Total: 7.72 kcal Atomic # 6 Polarization: 25.96 SS G_CDS: 5.73 Total: 31.69 kcal Atomic # 7 Polarization: -131.91 SS G_CDS: -4.86 Total: -136.77 kcal Atomic # 8 Polarization: -70.17 SS G_CDS: -0.80 Total: -70.97 kcal Atomic # 14 Polarization: 53.94 SS G_CDS: 2.03 Total: 55.97 kcal Total: -113.79 1.43 -112.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714877511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.947 kcal (2) G-P(sol) polarization free energy of solvation -113.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -112.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds