Wall clock time and date at job start Sat Apr 11 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47380 * 2 1 4 4 N 1.46497 * 109.47314 * 174.42409 * 3 2 1 5 5 C 1.34780 * 119.99875 * 262.73065 * 4 3 2 6 6 O 1.21277 * 120.00140 * 184.45525 * 5 4 3 7 7 C 1.50706 * 119.99855 * 4.44795 * 5 4 3 8 8 H 1.09003 * 109.86770 * 309.24785 * 7 5 4 9 9 C 1.54102 * 109.87715 * 70.25173 * 7 5 4 10 10 C 1.54810 * 104.18738 * 121.45238 * 9 7 5 11 11 C 1.54998 * 102.09039 * 20.88056 * 10 9 7 12 12 H 1.09000 * 110.61459 * 81.63769 * 11 10 9 13 13 C 1.50699 * 110.61402 * 204.47169 * 11 10 9 14 14 N 1.34773 * 120.00325 * 294.99956 * 13 11 10 15 15 O 1.21284 * 119.99736 * 115.00645 * 13 11 10 16 16 O 1.43741 * 109.87775 * 188.08382 * 7 5 4 17 17 C 1.46494 * 120.00265 * 82.72376 * 4 3 2 18 18 H 1.09002 * 110.89114 * 359.30424 * 17 4 3 19 19 C 1.55158 * 111.00366 * 123.18359 * 17 4 3 20 20 C 1.54321 * 102.94681 * 153.57529 * 19 17 4 21 21 N 1.47024 * 107.26869 * 337.81098 * 20 19 17 22 22 C 1.36935 * 125.64431 * 178.97622 * 21 20 19 23 23 H 1.08008 * 119.99686 * 179.97438 * 22 21 20 24 24 C 1.38815 * 120.00637 * 359.96897 * 22 21 20 25 25 N 1.31617 * 119.99549 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00030 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47191 * 60.00322 * 26 24 22 28 28 H 1.48506 * 109.46751 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47072 * 299.99850 * 26 24 22 30 30 C 1.47463 * 108.72457 * 358.96858 * 21 20 19 31 31 H 1.09005 * 109.46929 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46683 * 300.00488 * 1 2 3 33 33 H 1.08996 * 109.47245 * 59.99845 * 1 2 3 34 34 H 1.08997 * 109.47107 * 239.99910 * 2 1 3 35 35 H 1.09008 * 109.47184 * 119.99770 * 2 1 3 36 36 H 1.08993 * 109.47118 * 54.41994 * 3 2 1 37 37 H 1.09002 * 109.46454 * 294.41894 * 3 2 1 38 38 H 1.09000 * 110.48580 * 240.13551 * 9 7 5 39 39 H 1.09001 * 110.48499 * 2.77949 * 9 7 5 40 40 H 1.08998 * 110.90764 * 139.07813 * 10 9 7 41 41 H 1.08997 * 110.90599 * 262.64521 * 10 9 7 42 42 H 0.97000 * 120.00054 * 0.02562 * 14 13 11 43 43 H 0.97001 * 120.00038 * 180.02562 * 14 13 11 44 44 H 1.09008 * 110.71840 * 271.93807 * 19 17 4 45 45 H 1.09002 * 110.72055 * 35.03412 * 19 17 4 46 46 H 1.09007 * 109.87977 * 97.21970 * 20 19 17 47 47 H 1.08989 * 109.88706 * 218.38667 * 20 19 17 48 48 H 0.96996 * 120.00060 * 180.02562 * 25 24 22 49 49 H 1.09004 * 110.35190 * 265.25863 * 30 21 20 50 50 H 1.09005 * 110.40616 * 142.92081 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4989 1.4447 0.1342 5 6 4.0641 1.6308 1.3435 6 8 5.2699 1.7134 1.4431 7 6 3.1976 1.7364 2.5720 8 1 2.4097 2.4715 2.4075 9 6 2.5749 0.3640 2.8936 10 6 3.0655 0.0515 4.3283 11 6 3.4356 1.4600 4.8588 12 1 2.5461 1.9847 5.2075 13 6 4.4572 1.3599 5.9621 14 7 4.1364 0.7592 7.1251 15 8 5.5681 1.8200 5.8035 16 8 3.9979 2.1182 3.7033 17 6 4.3434 1.2444 -1.0460 18 1 3.7353 1.0969 -1.9385 19 6 5.3275 2.4292 -1.2331 20 6 6.5034 1.7846 -1.9969 21 7 6.4506 0.3381 -1.7393 22 6 7.3104 -0.5958 -2.2527 23 1 7.1872 -1.6391 -2.0016 24 6 8.3404 -0.2019 -3.0958 25 7 8.4908 1.0694 -3.4015 26 14 9.5129 -1.4761 -3.7966 27 1 8.7483 -2.4629 -4.6010 28 1 10.5161 -0.8034 -4.6606 29 1 10.2066 -2.1748 -2.6850 30 6 5.3186 0.0591 -0.8364 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8901 36 1 1.5975 1.9843 0.8357 37 1 1.7606 1.9266 -0.9358 38 1 1.4868 0.4230 2.8667 39 1 2.9343 -0.3912 2.1946 40 1 2.2676 -0.3914 4.9244 41 1 3.9398 -0.5990 4.3073 42 1 3.2480 0.3909 7.2519 43 1 4.7939 0.6950 7.8354 44 1 4.8698 3.2207 -1.8266 45 1 5.6560 2.8139 -0.2676 46 1 6.4001 1.9748 -3.0653 47 1 7.4477 2.1913 -1.6355 48 1 9.2102 1.3447 -3.9909 49 1 5.6585 0.0260 0.1988 50 1 4.8377 -0.8805 -1.1088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714877512.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:55 Heat of formation + Delta-G solvation = -75.143488 kcal Electronic energy + Delta-G solvation = -31595.706505 eV Core-core repulsion = 27431.371348 eV Total energy + Delta-G solvation = -4164.335157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94544 -39.75039 -38.28190 -36.51933 -36.04125 -34.07923 -33.02752 -32.35974 -31.80415 -30.28805 -28.92233 -27.34565 -26.14850 -25.00437 -23.97939 -22.49771 -21.94076 -20.97257 -20.75783 -19.93692 -18.77777 -17.94000 -17.54118 -16.91723 -16.71534 -16.57427 -16.04010 -15.25272 -14.94704 -14.90116 -14.53516 -14.45526 -14.36250 -13.94545 -13.83289 -13.59404 -13.48832 -13.00198 -12.52051 -12.40853 -12.21942 -12.16311 -12.08002 -11.89530 -11.81672 -11.62784 -11.45766 -11.26730 -10.82008 -10.77186 -10.73863 -10.56920 -10.46164 -10.14829 -10.02162 -9.99231 -9.93060 -9.75326 -9.55052 -8.88701 -8.49664 -8.26256 -6.65543 -5.57147 -2.89907 2.35099 2.62234 2.83573 3.15335 3.48919 3.53017 3.54585 3.80342 4.04703 4.31234 4.41199 4.51998 4.60677 4.62469 4.70114 4.80948 4.84474 4.99462 5.07069 5.17540 5.25058 5.27622 5.42394 5.47542 5.50685 5.54714 5.62834 5.64388 5.69575 5.82862 5.88306 5.91258 5.97570 6.12716 6.28151 6.36878 6.51736 6.59694 6.67252 6.77613 6.85789 6.99743 7.27363 7.63459 7.70171 7.83887 7.97807 8.00281 8.40010 8.50190 9.35775 9.96280 10.63655 11.54436 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.003385 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.588888 B = 8268.768091 C = 9661.785850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.156 4.156 3 C 0.107 3.893 4 N -0.603 5.603 5 C 0.506 3.494 6 O -0.486 6.486 7 C 0.058 3.942 8 H 0.094 0.906 9 C -0.145 4.145 10 C -0.143 4.143 11 C 0.055 3.945 12 H 0.099 0.901 13 C 0.520 3.480 14 N -0.854 5.854 15 O -0.509 6.509 16 O -0.315 6.315 17 C 0.133 3.867 18 H 0.092 0.908 19 C -0.158 4.158 20 C 0.186 3.814 21 N -0.601 5.601 22 C -0.224 4.224 23 H 0.075 0.925 24 C -0.009 4.009 25 N -0.922 5.922 26 Si 0.912 3.088 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.130 3.870 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.400 0.600 43 H 0.405 0.595 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.042 0.958 48 H 0.251 0.749 49 H 0.038 0.962 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.101 -0.979 17.221 29.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C -0.016 4.016 4 N -0.338 5.338 5 C 0.291 3.709 6 O -0.358 6.358 7 C -0.003 4.003 8 H 0.111 0.889 9 C -0.183 4.183 10 C -0.181 4.181 11 C -0.006 4.006 12 H 0.117 0.883 13 C 0.303 3.697 14 N -0.421 5.421 15 O -0.381 6.381 16 O -0.231 6.231 17 C 0.030 3.970 18 H 0.110 0.890 19 C -0.197 4.197 20 C 0.061 3.939 21 N -0.328 5.328 22 C -0.353 4.353 23 H 0.093 0.907 24 C -0.206 4.206 25 N -0.570 5.570 26 Si 0.742 3.258 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.003 3.997 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.228 0.772 43 H 0.237 0.763 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.056 0.944 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -22.331 -0.394 16.813 27.955 hybrid contribution 0.118 -0.962 -0.093 0.974 sum -22.212 -1.356 16.720 27.835 Atomic orbital electron populations 1.21702 0.95257 1.01903 1.01767 1.22236 0.95935 0.97459 1.03795 1.21697 0.80088 0.96927 1.02936 1.47905 1.06164 1.72375 1.07351 1.20201 0.88924 0.78055 0.83715 1.90818 1.14084 1.45818 1.85059 1.22770 0.92889 0.97162 0.87523 0.88859 1.23122 1.01458 0.96549 0.97164 1.23144 1.02816 0.96025 0.96099 1.23011 0.95056 0.94343 0.88215 0.88317 1.20177 0.88629 0.77832 0.83094 1.43715 1.18682 1.62593 1.17128 1.90853 1.22048 1.45187 1.80022 1.89182 1.52669 1.67781 1.13516 1.22394 0.91204 0.98052 0.85328 0.89041 1.23299 0.97807 0.96574 1.02014 1.21044 0.93436 0.82783 0.96676 1.44318 1.31000 1.03486 1.54008 1.18991 1.05863 0.88377 1.22052 0.90682 1.24789 0.99058 0.96328 1.00375 1.69966 1.33567 1.13514 1.39909 0.86202 0.80681 0.80265 0.78627 1.21292 1.21637 1.21246 1.21803 0.88678 0.93789 0.95449 0.92499 0.92815 0.92531 0.91043 0.90896 0.90637 0.90303 0.89066 0.88765 0.88957 0.89448 0.77206 0.76317 0.92815 0.90173 0.93830 0.93952 0.93817 0.94445 0.95084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.16 -1.28 6.00 -26.73 -0.16 -1.44 16 3 C 0.11 1.01 4.93 -4.04 -0.02 0.99 16 4 N -0.60 -8.80 2.57 -163.67 -0.42 -9.22 16 5 C 0.51 8.44 6.06 -10.98 -0.07 8.37 16 6 O -0.49 -11.06 12.60 -13.89 -0.18 -11.24 16 7 C 0.06 0.70 2.97 -27.30 -0.08 0.61 16 8 H 0.09 0.84 6.77 -51.93 -0.35 0.49 16 9 C -0.15 -1.17 4.63 -25.20 -0.12 -1.29 16 10 C -0.14 -1.05 6.57 -24.72 -0.16 -1.22 16 11 C 0.06 0.54 3.76 -26.83 -0.10 0.44 16 12 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 13 C 0.52 6.01 7.48 -10.99 -0.08 5.93 16 14 N -0.85 -5.06 8.86 31.22 0.28 -4.79 16 15 O -0.51 -9.18 17.40 -13.51 -0.24 -9.41 16 16 O -0.31 -4.77 10.03 -64.26 -0.64 -5.41 16 17 C 0.13 2.48 3.54 -65.78 -0.23 2.25 16 18 H 0.09 1.57 7.98 -51.93 -0.41 1.15 16 19 C -0.16 -3.39 6.30 -24.90 -0.16 -3.55 16 20 C 0.19 4.97 5.37 -3.06 -0.02 4.96 16 21 N -0.60 -16.73 3.40 -170.03 -0.58 -17.31 16 22 C -0.22 -6.69 10.28 -15.06 -0.15 -6.84 16 23 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 24 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 25 N -0.92 -28.67 10.31 55.49 0.57 -28.10 16 26 Si 0.91 23.25 29.55 -169.99 -5.02 18.23 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 C 0.13 2.98 6.61 -2.50 -0.02 2.96 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.59 4.66 -51.92 -0.24 0.35 16 36 H 0.08 0.53 5.92 -51.93 -0.31 0.23 16 37 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 38 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 39 H 0.09 0.90 5.83 -51.93 -0.30 0.60 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 42 H 0.40 0.81 8.83 -40.82 -0.36 0.45 16 43 H 0.41 2.14 8.93 -40.82 -0.36 1.78 16 44 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 45 H 0.08 1.87 5.83 -51.93 -0.30 1.57 16 46 H 0.04 1.24 7.38 -51.93 -0.38 0.86 16 47 H 0.04 1.28 7.50 -51.94 -0.39 0.89 16 48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.04 0.95 5.96 -51.93 -0.31 0.64 16 50 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 387.05 15.07 5.83 5.83 Total: -1.00 -41.80 387.05 -9.40 -51.21 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.91 Total: -1.08 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -1.10 Total: 11.29 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.15 Total: -59.42 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.05 Total: -26.06 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -41.80 -9.40 -51.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714877512.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.938 kcal (2) G-P(sol) polarization free energy of solvation -41.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds