Wall clock time and date at job start Sat Apr 11 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47380 * 2 1 4 4 N 1.46497 * 109.47314 * 174.42409 * 3 2 1 5 5 C 1.34780 * 119.99875 * 262.73065 * 4 3 2 6 6 O 1.21277 * 120.00140 * 184.45525 * 5 4 3 7 7 C 1.50706 * 119.99855 * 4.44795 * 5 4 3 8 8 H 1.09003 * 109.86770 * 309.24785 * 7 5 4 9 9 C 1.54102 * 109.87715 * 70.25173 * 7 5 4 10 10 C 1.54810 * 104.18738 * 121.45238 * 9 7 5 11 11 C 1.54998 * 102.09039 * 20.88056 * 10 9 7 12 12 H 1.09000 * 110.61459 * 81.63769 * 11 10 9 13 13 C 1.50699 * 110.61402 * 204.47169 * 11 10 9 14 14 N 1.34773 * 120.00325 * 294.99956 * 13 11 10 15 15 O 1.21284 * 119.99736 * 115.00645 * 13 11 10 16 16 O 1.43741 * 109.87775 * 188.08382 * 7 5 4 17 17 C 1.46494 * 120.00265 * 82.72376 * 4 3 2 18 18 H 1.09002 * 110.89114 * 359.30424 * 17 4 3 19 19 C 1.55158 * 111.00366 * 123.18359 * 17 4 3 20 20 C 1.54321 * 102.94681 * 153.57529 * 19 17 4 21 21 N 1.47024 * 107.26869 * 337.81098 * 20 19 17 22 22 C 1.36935 * 125.64431 * 178.97622 * 21 20 19 23 23 H 1.08008 * 119.99686 * 179.97438 * 22 21 20 24 24 C 1.38815 * 120.00637 * 359.96897 * 22 21 20 25 25 N 1.31617 * 119.99549 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00030 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47191 * 60.00322 * 26 24 22 28 28 H 1.48506 * 109.46751 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47072 * 299.99850 * 26 24 22 30 30 C 1.47463 * 108.72457 * 358.96858 * 21 20 19 31 31 H 1.09005 * 109.46929 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46683 * 300.00488 * 1 2 3 33 33 H 1.08996 * 109.47245 * 59.99845 * 1 2 3 34 34 H 1.08997 * 109.47107 * 239.99910 * 2 1 3 35 35 H 1.09008 * 109.47184 * 119.99770 * 2 1 3 36 36 H 1.08993 * 109.47118 * 54.41994 * 3 2 1 37 37 H 1.09002 * 109.46454 * 294.41894 * 3 2 1 38 38 H 1.09000 * 110.48580 * 240.13551 * 9 7 5 39 39 H 1.09001 * 110.48499 * 2.77949 * 9 7 5 40 40 H 1.08998 * 110.90764 * 139.07813 * 10 9 7 41 41 H 1.08997 * 110.90599 * 262.64521 * 10 9 7 42 42 H 0.97000 * 120.00054 * 0.02562 * 14 13 11 43 43 H 0.97001 * 120.00038 * 180.02562 * 14 13 11 44 44 H 1.09008 * 110.71840 * 271.93807 * 19 17 4 45 45 H 1.09002 * 110.72055 * 35.03412 * 19 17 4 46 46 H 1.09007 * 109.87977 * 97.21970 * 20 19 17 47 47 H 1.08989 * 109.88706 * 218.38667 * 20 19 17 48 48 H 0.96996 * 120.00060 * 180.02562 * 25 24 22 49 49 H 1.09004 * 110.35190 * 265.25863 * 30 21 20 50 50 H 1.09005 * 110.40616 * 142.92081 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4989 1.4447 0.1342 5 6 4.0641 1.6308 1.3435 6 8 5.2699 1.7134 1.4431 7 6 3.1976 1.7364 2.5720 8 1 2.4097 2.4715 2.4075 9 6 2.5749 0.3640 2.8936 10 6 3.0655 0.0515 4.3283 11 6 3.4356 1.4600 4.8588 12 1 2.5461 1.9847 5.2075 13 6 4.4572 1.3599 5.9621 14 7 4.1364 0.7592 7.1251 15 8 5.5681 1.8200 5.8035 16 8 3.9979 2.1182 3.7033 17 6 4.3434 1.2444 -1.0460 18 1 3.7353 1.0969 -1.9385 19 6 5.3275 2.4292 -1.2331 20 6 6.5034 1.7846 -1.9969 21 7 6.4506 0.3381 -1.7393 22 6 7.3104 -0.5958 -2.2527 23 1 7.1872 -1.6391 -2.0016 24 6 8.3404 -0.2019 -3.0958 25 7 8.4908 1.0694 -3.4015 26 14 9.5129 -1.4761 -3.7966 27 1 8.7483 -2.4629 -4.6010 28 1 10.5161 -0.8034 -4.6606 29 1 10.2066 -2.1748 -2.6850 30 6 5.3186 0.0591 -0.8364 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8901 36 1 1.5975 1.9843 0.8357 37 1 1.7606 1.9266 -0.9358 38 1 1.4868 0.4230 2.8667 39 1 2.9343 -0.3912 2.1946 40 1 2.2676 -0.3914 4.9244 41 1 3.9398 -0.5990 4.3073 42 1 3.2480 0.3909 7.2519 43 1 4.7939 0.6950 7.8354 44 1 4.8698 3.2207 -1.8266 45 1 5.6560 2.8139 -0.2676 46 1 6.4001 1.9748 -3.0653 47 1 7.4477 2.1913 -1.6355 48 1 9.2102 1.3447 -3.9909 49 1 5.6585 0.0260 0.1988 50 1 4.8377 -0.8805 -1.1088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714877512.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:54 Heat of formation + Delta-G solvation = -108.823678 kcal Electronic energy + Delta-G solvation = -31597.166987 eV Core-core repulsion = 27431.371348 eV Total energy + Delta-G solvation = -4165.795640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.96166 -40.84274 -39.38004 -38.20355 -37.19578 -34.88640 -34.63415 -33.27155 -33.06885 -31.46805 -30.69987 -29.02294 -26.96494 -26.67695 -25.36000 -23.21313 -22.90422 -22.18664 -22.01498 -21.57010 -19.93101 -19.05059 -18.66859 -18.32887 -17.71490 -17.63749 -17.14008 -16.75379 -16.24111 -16.06163 -15.79714 -15.71676 -15.36556 -15.29774 -14.94027 -14.59608 -14.45986 -14.42848 -14.18950 -13.77300 -13.67629 -13.29282 -13.00974 -12.92561 -12.79894 -12.75857 -12.68759 -12.59797 -12.31235 -12.09898 -12.08483 -12.00266 -11.91059 -11.80505 -11.59272 -11.38700 -11.24421 -10.84549 -10.73904 -10.72441 -10.22314 -9.62291 -8.90946 -7.87002 -5.24178 1.40808 1.46898 1.51183 1.52834 1.61131 1.70431 2.26861 2.48238 3.02915 3.27541 3.32262 3.57673 3.69035 3.74143 3.86016 3.88375 3.99675 4.02679 4.08303 4.13502 4.22655 4.28178 4.37451 4.47652 4.58421 4.64244 4.68418 4.73235 4.78906 4.83500 4.90755 4.93184 4.98096 5.02802 5.07797 5.13440 5.37579 5.38364 5.39942 5.56163 5.62231 5.64866 5.68633 5.76834 5.87852 6.15471 6.44685 6.50197 7.05474 7.28416 7.32592 7.72763 8.39307 9.23480 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.003385 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.588888 B = 8268.768091 C = 9661.785850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 C 0.099 3.901 4 N -0.594 5.594 5 C 0.494 3.506 6 O -0.564 6.564 7 C 0.061 3.939 8 H 0.135 0.865 9 C -0.138 4.138 10 C -0.135 4.135 11 C 0.050 3.950 12 H 0.150 0.850 13 C 0.511 3.489 14 N -0.824 5.824 15 O -0.592 6.592 16 O -0.371 6.371 17 C 0.155 3.845 18 H 0.117 0.883 19 C -0.145 4.145 20 C 0.197 3.803 21 N -0.623 5.623 22 C -0.248 4.248 23 H 0.081 0.919 24 C -0.069 4.069 25 N -0.953 5.953 26 Si 0.986 3.014 27 H -0.268 1.268 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.130 3.870 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.146 0.854 39 H 0.075 0.925 40 H 0.149 0.851 41 H 0.053 0.947 42 H 0.424 0.576 43 H 0.410 0.590 44 H 0.083 0.917 45 H 0.058 0.942 46 H 0.022 0.978 47 H -0.011 1.011 48 H 0.248 0.752 49 H 0.011 0.989 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.282 -2.284 18.449 34.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.191 4.191 3 C -0.022 4.022 4 N -0.327 5.327 5 C 0.283 3.717 6 O -0.442 6.442 7 C 0.001 3.999 8 H 0.152 0.848 9 C -0.176 4.176 10 C -0.173 4.173 11 C -0.010 4.010 12 H 0.167 0.833 13 C 0.296 3.704 14 N -0.390 5.390 15 O -0.472 6.472 16 O -0.289 6.289 17 C 0.050 3.950 18 H 0.134 0.866 19 C -0.184 4.184 20 C 0.071 3.929 21 N -0.350 5.350 22 C -0.377 4.377 23 H 0.099 0.901 24 C -0.262 4.262 25 N -0.602 5.602 26 Si 0.813 3.187 27 H -0.193 1.193 28 H -0.217 1.217 29 H -0.208 1.208 30 C 0.004 3.996 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.164 0.836 39 H 0.093 0.907 40 H 0.167 0.833 41 H 0.072 0.928 42 H 0.256 0.744 43 H 0.242 0.758 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.040 0.960 47 H 0.007 0.993 48 H 0.057 0.943 49 H 0.028 0.972 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -27.666 -1.757 18.097 33.106 hybrid contribution 1.710 -0.587 -0.367 1.845 sum -25.957 -2.345 17.730 31.521 Atomic orbital electron populations 1.21667 0.92800 1.02479 1.03072 1.22192 0.97870 0.96113 1.02903 1.22157 0.76269 0.98550 1.05236 1.47935 1.08138 1.71153 1.05506 1.21358 0.88694 0.76112 0.85547 1.90792 1.17724 1.49352 1.86300 1.22990 0.91907 1.00652 0.84390 0.84760 1.23243 1.04204 0.93395 0.96731 1.23209 1.03275 0.94224 0.96605 1.23443 0.95364 0.95998 0.86190 0.83281 1.20825 0.88010 0.76966 0.84644 1.43487 1.19920 1.60208 1.15411 1.90820 1.25405 1.49196 1.81741 1.89146 1.54986 1.69026 1.15770 1.21988 0.90910 0.94010 0.88052 0.86563 1.23075 0.96783 0.98089 1.00420 1.20742 0.93388 0.83032 0.95737 1.44653 1.32280 1.03604 1.54435 1.19445 1.06805 0.89186 1.22274 0.90108 1.25769 1.00849 0.98586 1.00948 1.70217 1.33976 1.15606 1.40358 0.85056 0.78124 0.77756 0.77788 1.19318 1.21707 1.20806 1.21859 0.88420 0.96430 0.92912 0.92341 0.90293 0.92485 0.93377 0.90631 0.86996 0.89097 0.83600 0.90676 0.83322 0.92789 0.74385 0.75818 0.89829 0.92347 0.96022 0.99269 0.94335 0.97159 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.91 71.98 0.71 -0.23 16 2 C -0.15 -1.92 6.00 30.60 0.18 -1.74 16 3 C 0.10 1.46 4.93 86.38 0.43 1.88 16 4 N -0.59 -16.56 2.57 -790.13 -2.03 -18.59 16 5 C 0.49 16.54 6.06 87.66 0.53 17.07 16 6 O -0.56 -27.53 12.60 15.58 0.20 -27.33 16 7 C 0.06 1.31 2.97 30.22 0.09 1.40 16 8 H 0.14 1.72 6.77 -2.39 -0.02 1.70 16 9 C -0.14 -1.64 4.63 31.58 0.15 -1.50 16 10 C -0.14 -1.50 6.57 31.90 0.21 -1.29 16 11 C 0.05 0.85 3.76 30.53 0.11 0.96 16 12 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 13 C 0.51 11.61 7.48 87.66 0.66 12.27 16 14 N -0.82 -8.12 8.86 -173.53 -1.54 -9.65 16 15 O -0.59 -22.83 17.40 15.19 0.26 -22.56 16 16 O -0.37 -11.12 10.03 -121.23 -1.22 -12.33 16 17 C 0.16 5.79 3.54 46.39 0.16 5.95 16 18 H 0.12 3.79 7.98 -2.39 -0.02 3.78 16 19 C -0.14 -6.47 6.30 31.78 0.20 -6.27 16 20 C 0.20 11.25 5.37 86.73 0.47 11.72 16 21 N -0.62 -36.50 3.40 -691.86 -2.35 -38.85 16 22 C -0.25 -15.39 10.28 84.03 0.86 -14.53 16 23 H 0.08 4.76 7.83 -2.91 -0.02 4.74 16 24 C -0.07 -4.26 5.49 84.86 0.47 -3.79 16 25 N -0.95 -62.27 10.31 21.65 0.22 -62.05 16 26 Si 0.99 49.13 29.55 68.60 2.03 51.16 16 27 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 28 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 29 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 30 C 0.13 6.20 6.61 86.85 0.57 6.77 16 31 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.08 0.16 8.14 -2.38 -0.02 0.14 16 33 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.94 4.66 -2.38 -0.01 0.92 16 36 H 0.11 0.89 5.92 -2.39 -0.01 0.87 16 37 H 0.09 1.20 8.11 -2.39 -0.02 1.18 16 38 H 0.15 0.17 8.09 -2.39 -0.02 0.15 16 39 H 0.07 1.24 5.83 -2.39 -0.01 1.23 16 40 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.05 0.97 8.05 -2.39 -0.02 0.95 16 42 H 0.42 0.06 8.83 -92.71 -0.82 -0.76 16 43 H 0.41 3.83 8.93 -92.71 -0.83 3.00 16 44 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 45 H 0.06 2.91 5.83 -2.39 -0.01 2.89 16 46 H 0.02 1.31 7.38 -2.38 -0.02 1.29 16 47 H -0.01 -0.73 7.50 -2.39 -0.02 -0.75 16 48 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 49 H 0.01 0.57 5.96 -2.39 -0.01 0.55 16 50 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -106.50 387.05 0.71 -105.79 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -0.67 Total: 5.73 kcal Atomic # 6 Polarization: 22.89 SS G_CDS: 5.80 Total: 28.69 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.69 Total: -129.15 kcal Atomic # 8 Polarization: -61.47 SS G_CDS: -0.75 Total: -62.22 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.03 Total: 51.16 kcal Total: -106.50 0.71 -105.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714877512.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.034 kcal (2) G-P(sol) polarization free energy of solvation -106.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds