Wall clock time and date at job start Sat Apr 11 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47123 * 2 1 4 4 N 1.46899 * 109.47150 * 174.88984 * 3 2 1 5 5 C 1.46900 * 110.99934 * 76.02055 * 4 3 2 6 6 C 1.53007 * 109.46852 * 199.54713 * 5 4 3 7 7 N 1.46501 * 109.46719 * 174.88944 * 6 5 4 8 8 C 1.34778 * 119.99587 * 179.97438 * 7 6 5 9 9 O 1.21737 * 120.00133 * 359.97438 * 8 7 6 10 10 C 1.41805 * 120.00061 * 180.02562 * 8 7 6 11 11 C 1.33443 * 118.78855 * 180.02562 * 10 8 7 12 12 O 1.34355 * 123.08250 * 180.41266 * 11 10 8 13 13 C 1.45354 * 117.47544 * 343.67087 * 12 11 10 14 14 C 1.53479 * 108.30298 * 47.45659 * 13 12 11 15 15 C 1.50415 * 118.78353 * 359.97438 * 10 8 7 16 16 C 1.46898 * 111.00177 * 199.97413 * 4 3 2 17 17 C 1.50700 * 109.46860 * 66.04594 * 16 4 3 18 18 O 1.21295 * 120.00050 * 359.97438 * 17 16 4 19 19 N 1.34777 * 120.00241 * 180.02562 * 17 16 4 20 20 C 1.37096 * 120.00331 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00018 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99720 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99857 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00348 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47156 * 89.99385 * 24 22 20 26 26 H 1.48495 * 109.47240 * 209.99592 * 24 22 20 27 27 H 1.48498 * 109.46957 * 329.99678 * 24 22 20 28 28 H 1.08994 * 109.47338 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47051 * 299.99958 * 1 2 3 30 30 H 1.08994 * 109.47266 * 59.99911 * 1 2 3 31 31 H 1.09000 * 109.47415 * 239.99663 * 2 1 3 32 32 H 1.09005 * 109.47090 * 119.99614 * 2 1 3 33 33 H 1.08995 * 109.47235 * 54.88616 * 3 2 1 34 34 H 1.08993 * 109.46589 * 294.88934 * 3 2 1 35 35 H 1.09001 * 109.47345 * 79.54754 * 5 4 3 36 36 H 1.09004 * 109.47174 * 319.53894 * 5 4 3 37 37 H 1.08994 * 109.47239 * 54.88700 * 6 5 4 38 38 H 1.09001 * 109.46762 * 294.88406 * 6 5 4 39 39 H 0.96998 * 120.00227 * 359.97438 * 7 6 5 40 40 H 1.08003 * 118.46625 * 0.42940 * 11 10 8 41 41 H 1.09009 * 109.70420 * 167.16798 * 13 12 11 42 42 H 1.09002 * 109.70937 * 287.73702 * 13 12 11 43 43 H 1.09000 * 109.70466 * 57.00424 * 14 13 12 44 44 H 1.09002 * 109.71051 * 177.62883 * 14 13 12 45 45 H 1.09001 * 109.45724 * 282.36067 * 15 10 8 46 46 H 1.09002 * 109.45502 * 42.31991 * 15 10 8 47 47 H 1.08995 * 109.47253 * 186.04479 * 16 4 3 48 48 H 1.08997 * 109.47093 * 306.04669 * 16 4 3 49 49 H 0.97006 * 119.99542 * 359.97438 * 19 17 16 50 50 H 0.96996 * 120.00207 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5038 1.4444 0.1234 5 6 4.1397 1.0744 -1.1481 6 6 5.5752 0.6145 -0.8855 7 7 6.1691 0.1307 -2.1343 8 6 7.4367 -0.3272 -2.1446 9 8 8.0882 -0.3383 -1.1163 10 6 8.0118 -0.7950 -3.3535 11 6 9.2684 -1.2435 -3.3359 12 8 9.9002 -1.6983 -4.4309 13 6 9.0832 -2.0366 -5.5845 14 6 8.0976 -0.8862 -5.8313 15 6 7.1823 -0.7683 -4.6080 16 6 3.9907 2.7473 0.5959 17 6 3.5118 2.9813 2.0055 18 8 2.8314 2.1452 2.5615 19 7 3.8386 4.1201 2.6480 20 6 3.4025 4.3332 3.9301 21 1 2.7974 3.5884 4.4255 22 6 3.7400 5.5071 4.5926 23 7 3.3216 5.7117 5.8215 24 14 4.7872 6.7951 3.7360 25 1 3.9070 7.7485 3.0139 26 1 5.5911 7.5305 4.7450 27 1 5.6961 6.1302 2.7680 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6038 1.9821 0.8406 34 1 1.7533 1.9292 -0.9322 35 1 4.1507 1.9376 -1.8136 36 1 3.5780 0.2641 -1.6131 37 1 5.5702 -0.1898 -0.1500 38 1 6.1609 1.4513 -0.5050 39 1 5.6500 0.1399 -2.9537 40 1 9.8028 -1.2410 -2.3973 41 1 9.7196 -2.1693 -6.4595 42 1 8.5325 -2.9566 -5.3879 43 1 8.6470 0.0449 -5.9703 44 1 7.5006 -1.0975 -6.7184 45 1 6.4812 -1.6029 -4.5975 46 1 6.6294 0.1697 -4.6578 47 1 5.0804 2.7569 0.5761 48 1 3.6085 3.5351 -0.0532 49 1 4.3825 4.7890 2.2031 50 1 3.5568 6.5313 6.2838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731866207.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:05 Heat of formation + Delta-G solvation = -91.169932 kcal Electronic energy + Delta-G solvation = -29388.863004 eV Core-core repulsion = 25223.832888 eV Total energy + Delta-G solvation = -4165.030116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95926 -39.45021 -38.87798 -37.08281 -35.07447 -34.51616 -33.86995 -32.97788 -32.04660 -31.61820 -29.33623 -27.65449 -26.25199 -25.24845 -24.58693 -23.46282 -21.92453 -21.50042 -20.63668 -19.34143 -19.20462 -18.30850 -18.23523 -16.88492 -16.42121 -16.05566 -15.80002 -15.63987 -15.30413 -15.03637 -14.94936 -14.68354 -14.45313 -14.41052 -13.87547 -13.77968 -13.57024 -13.35599 -13.28330 -13.11701 -12.93367 -12.54006 -12.32527 -11.97767 -11.85434 -11.76704 -11.61972 -11.49900 -11.46531 -11.24235 -11.16662 -10.99167 -10.65223 -10.56986 -10.32459 -10.01525 -9.94505 -9.49597 -9.19509 -8.83102 -8.52954 -8.14980 -8.01921 -6.28138 -3.79237 1.09480 2.72498 3.05955 3.08955 3.11970 3.17737 3.20470 3.76649 4.00621 4.11718 4.13473 4.18366 4.34733 4.63743 4.67345 4.73258 4.85471 4.90962 4.94631 5.06758 5.09438 5.18519 5.23685 5.28883 5.33633 5.36788 5.50037 5.56701 5.58027 5.60946 5.62893 5.80350 5.80783 5.85677 5.91547 6.00993 6.02016 6.08602 6.26332 6.34632 6.49503 6.55078 6.78109 7.17304 7.27308 7.41868 7.61424 8.16329 8.17545 8.63262 8.98360 9.45687 9.86520 10.84991 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.002337 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.677242 B =11980.737896 C =13800.167476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.057 3.943 4 N -0.512 5.512 5 C 0.045 3.955 6 C 0.121 3.879 7 N -0.728 5.728 8 C 0.570 3.430 9 O -0.555 6.555 10 C -0.319 4.319 11 C 0.160 3.840 12 O -0.311 6.311 13 C 0.051 3.949 14 C -0.157 4.157 15 C -0.073 4.073 16 C 0.039 3.961 17 C 0.453 3.547 18 O -0.556 6.556 19 N -0.592 5.592 20 C -0.302 4.302 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.023 0.977 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.396 0.604 40 H 0.181 0.819 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.091 0.909 48 H 0.049 0.951 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.806 -12.403 -28.241 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.071 4.071 4 N -0.236 5.236 5 C -0.084 4.084 6 C -0.002 4.002 7 N -0.381 5.381 8 C 0.361 3.639 9 O -0.436 6.436 10 C -0.323 4.323 11 C 0.092 3.908 12 O -0.221 6.221 13 C -0.023 4.023 14 C -0.195 4.195 15 C -0.111 4.111 16 C -0.092 4.092 17 C 0.238 3.762 18 O -0.438 6.438 19 N -0.232 5.232 20 C -0.431 4.431 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.705 3.295 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.231 0.769 40 H 0.198 0.802 41 H 0.127 0.873 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.109 0.891 48 H 0.067 0.933 49 H 0.202 0.798 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.110 -13.219 -26.617 30.557 hybrid contribution 0.109 1.915 -1.568 2.477 sum 7.219 -11.304 -28.184 31.213 Atomic orbital electron populations 1.21717 0.96031 1.01234 1.01752 1.21427 0.94968 0.96599 1.02031 1.22265 0.86239 0.97755 1.00791 1.61398 1.06658 1.29078 1.26465 1.22267 0.94593 1.00092 0.91456 1.21326 0.92637 1.00365 0.85914 1.45836 1.14302 1.65678 1.12269 1.16535 0.81487 0.77478 0.88385 1.90849 1.61345 1.56782 1.34610 1.20029 0.98570 1.16895 0.96843 1.23024 0.92205 0.85939 0.89597 1.86294 1.36831 1.77169 1.21826 1.23570 0.94031 0.97602 0.87055 1.22196 0.98589 0.99707 0.98979 1.20270 0.97109 1.02814 0.90861 1.21981 1.01022 0.90226 0.95976 1.19602 0.85582 0.83392 0.87585 1.90552 1.40938 1.44397 1.67890 1.42224 1.48390 1.17503 1.15040 1.19417 1.30753 1.05043 0.87907 0.86251 1.25035 0.97888 0.97552 0.95732 1.69621 1.45088 1.26701 1.10791 0.86684 0.80752 0.82259 0.79798 1.19727 1.20181 1.19442 0.92973 0.92222 0.93408 0.93230 0.90619 0.88354 0.95882 0.94410 0.90185 0.90135 0.91383 0.76934 0.80194 0.87304 0.90733 0.90250 0.89431 0.90654 0.90292 0.89127 0.93308 0.79770 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.11 -1.51 5.98 -26.73 -0.16 -1.67 16 3 C 0.06 0.86 4.46 -3.82 -0.02 0.84 16 4 N -0.51 -7.92 4.10 -236.07 -0.97 -8.89 16 5 C 0.04 0.51 4.92 -3.82 -0.02 0.49 16 6 C 0.12 1.52 5.70 -4.04 -0.02 1.49 16 7 N -0.73 -7.44 5.47 -63.17 -0.35 -7.79 16 8 C 0.57 6.94 7.53 -14.90 -0.11 6.83 16 9 O -0.56 -9.11 15.92 5.16 0.08 -9.02 16 10 C -0.32 -2.87 5.70 -105.07 -0.60 -3.47 16 11 C 0.16 1.43 10.46 29.06 0.30 1.73 16 12 O -0.31 -2.42 10.48 -14.90 -0.16 -2.57 16 13 C 0.05 0.23 7.15 37.41 0.27 0.50 16 14 C -0.16 -0.65 6.24 -26.36 -0.16 -0.81 16 15 C -0.07 -0.41 5.08 -27.90 -0.14 -0.55 16 16 C 0.04 0.66 5.28 -4.98 -0.03 0.64 16 17 C 0.45 10.27 7.29 -10.99 -0.08 10.19 16 18 O -0.56 -14.66 14.12 5.54 0.08 -14.58 16 19 N -0.59 -14.21 5.09 -10.96 -0.06 -14.27 16 20 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 21 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 24 Si 0.88 19.66 27.74 -169.99 -4.71 14.95 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.57 6.91 -51.93 -0.36 0.21 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.85 5.85 -51.93 -0.30 1.55 16 34 H 0.02 0.30 7.99 -51.93 -0.42 -0.11 16 35 H 0.04 0.38 8.00 -51.93 -0.42 -0.03 16 36 H 0.08 0.80 6.58 -51.93 -0.34 0.46 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 0.95 6.95 -51.93 -0.36 0.59 16 39 H 0.40 2.82 6.58 -40.82 -0.27 2.55 16 40 H 0.18 1.67 7.21 -52.48 -0.38 1.30 16 41 H 0.11 0.27 8.14 -51.92 -0.42 -0.16 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.38 7.15 -51.93 -0.37 0.01 16 47 H 0.09 1.40 6.71 -51.93 -0.35 1.05 16 48 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 49 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 50 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 399.90 15.07 6.03 6.03 Total: -1.00 -35.34 399.90 -7.93 -43.27 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -8.00 Total: 11.01 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.65 Total: 7.07 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.60 Total: -56.16 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: 0.00 Total: -26.18 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.95 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.34 -7.93 -43.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731866207.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.896 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds