Wall clock time and date at job start Sat Apr 11 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35714 * 117.00430 * 2 1 4 4 C 1.41930 * 126.88372 * 180.30124 * 3 2 1 5 5 C 1.35268 * 103.96310 * 180.11590 * 4 3 2 6 6 C 1.50695 * 126.71136 * 179.87609 * 5 4 3 7 7 C 1.53004 * 109.46870 * 89.71098 * 6 5 4 8 8 C 1.50702 * 109.47114 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99957 * 355.40871 * 8 7 6 10 10 N 1.34774 * 120.00002 * 175.14171 * 8 7 6 11 11 C 1.46498 * 120.00026 * 5.35021 * 10 8 7 12 12 C 1.53000 * 109.47012 * 90.00400 * 11 10 8 13 13 N 1.46498 * 109.47012 * 180.02562 * 12 11 10 14 14 C 1.46510 * 120.00128 * 269.99925 * 13 12 11 15 15 C 1.36940 * 120.00371 * 89.99721 * 13 12 11 16 16 H 1.08001 * 119.99065 * 23.31942 * 15 13 12 17 17 C 1.38810 * 120.00259 * 203.31400 * 15 13 12 18 18 N 1.31616 * 120.00235 * 10.50317 * 17 15 13 19 19 Si 1.86796 * 119.99762 * 190.50659 * 17 15 13 20 20 H 1.48494 * 109.47463 * 60.00085 * 19 17 15 21 21 H 1.48500 * 109.47210 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47167 * 299.99967 * 19 17 15 23 23 C 1.46501 * 119.99805 * 185.35620 * 10 8 7 24 24 C 1.52997 * 109.47015 * 298.55639 * 23 10 8 25 25 C 1.52999 * 109.47323 * 58.56061 * 23 10 8 26 26 O 1.34086 * 106.57769 * 359.61581 * 5 4 3 27 27 N 1.20915 * 111.71966 * 0.26508 * 26 5 4 28 28 H 1.09001 * 109.47076 * 300.00472 * 1 2 3 29 29 H 1.09002 * 109.47085 * 59.99881 * 1 2 3 30 30 H 1.08993 * 109.47447 * 180.02562 * 1 2 3 31 31 H 1.08005 * 128.01792 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.47101 * 329.71859 * 6 5 4 33 33 H 1.08995 * 109.47479 * 209.70947 * 6 5 4 34 34 H 1.09005 * 109.47296 * 60.00151 * 7 6 5 35 35 H 1.08998 * 109.47359 * 299.99875 * 7 6 5 36 36 H 1.08999 * 109.47217 * 210.00643 * 11 10 8 37 37 H 1.08999 * 109.47489 * 330.00154 * 11 10 8 38 38 H 1.08994 * 109.46965 * 299.99535 * 12 11 10 39 39 H 1.08999 * 109.47215 * 60.00361 * 12 11 10 40 40 H 1.09000 * 109.46925 * 94.90963 * 14 13 12 41 41 H 1.09000 * 109.47034 * 214.91393 * 14 13 12 42 42 H 1.08999 * 109.46389 * 334.91868 * 14 13 12 43 43 H 0.96993 * 119.99854 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.46989 * 178.55917 * 23 10 8 45 45 H 1.09002 * 109.47023 * 65.67493 * 24 23 10 46 46 H 1.09002 * 109.46926 * 185.67272 * 24 23 10 47 47 H 1.08995 * 109.47347 * 305.67781 * 24 23 10 48 48 H 1.09002 * 109.47423 * 63.81181 * 25 23 10 49 49 H 1.08999 * 109.47221 * 183.81296 * 25 23 10 50 50 H 1.09002 * 109.47035 * 303.81282 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4434 1.4527 -0.0060 5 6 3.5398 2.8019 -0.0005 6 6 4.8089 3.6144 -0.0008 7 6 5.2382 3.8894 -1.4434 8 6 6.5077 4.7014 -1.4437 9 8 6.9735 5.0988 -0.3968 10 7 7.1283 4.9813 -2.6068 11 6 6.5092 4.5983 -3.8781 12 6 5.6177 5.7381 -4.3750 13 7 4.9982 5.3548 -5.6460 14 6 5.6725 5.6586 -6.9107 15 6 3.7887 4.7126 -5.6520 16 1 3.1199 4.8131 -4.8100 17 6 3.4224 3.9326 -6.7403 18 7 4.3086 3.6403 -7.6685 19 14 1.6718 3.2979 -6.8874 20 1 0.7314 4.4461 -6.9363 21 1 1.5389 2.4955 -8.1298 22 1 1.3533 2.4470 -5.7127 23 6 8.4222 5.6684 -2.5998 24 6 8.2638 7.0473 -1.9559 25 6 9.4328 4.8447 -1.7992 26 8 2.2852 3.2751 -0.0008 27 7 1.4701 2.3819 -0.0004 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.2447 0.7286 -0.0118 32 1 5.5949 3.0607 0.5129 33 1 4.6352 4.5599 0.5130 34 1 4.4522 4.4430 -1.9571 35 1 5.4119 2.9439 -1.9572 36 1 7.2869 4.3974 -4.6150 37 1 5.9061 3.7020 -3.7331 38 1 4.8401 5.9388 -3.6382 39 1 6.2209 6.6343 -4.5202 40 1 6.2530 4.7931 -7.2299 41 1 4.9286 5.8977 -7.6708 42 1 6.3375 6.5111 -6.7722 43 1 4.0527 3.0949 -8.4287 44 1 8.7776 5.7842 -3.6237 45 1 8.0059 6.9294 -0.9034 46 1 9.2007 7.5978 -2.0410 47 1 7.4719 7.5970 -2.4646 48 1 9.5966 3.8882 -2.2956 49 1 10.3759 5.3877 -1.7366 50 1 9.0461 4.6714 -0.7949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734551235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:09 Heat of formation + Delta-G solvation = 13.444863 kcal Electronic energy + Delta-G solvation = -30680.657924 eV Core-core repulsion = 26520.164246 eV Total energy + Delta-G solvation = -4160.493678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.88447 -40.07017 -38.88498 -36.49397 -35.48873 -34.59643 -33.02333 -32.57372 -31.17042 -30.09745 -27.85869 -27.68175 -27.01593 -25.93339 -25.18630 -23.47083 -23.36695 -21.89163 -20.97949 -20.59489 -18.57735 -17.83294 -17.67878 -16.84634 -16.78228 -16.47057 -15.90796 -15.66609 -15.52883 -15.09850 -14.83358 -14.23654 -14.00742 -13.73345 -13.67199 -13.61960 -13.20249 -13.01195 -12.83305 -12.59751 -12.37853 -12.32368 -12.17312 -11.95194 -11.87602 -11.71040 -11.51226 -11.37742 -11.10899 -11.01737 -10.91287 -10.86878 -10.83248 -10.54554 -10.23027 -10.03797 -9.86538 -9.63555 -9.33364 -9.18056 -8.67925 -8.40909 -6.82594 -5.80051 -3.27624 1.39339 2.25181 2.69608 2.83887 3.02884 3.30662 3.35584 3.40341 3.42634 4.17699 4.43882 4.59265 4.84213 4.87986 4.93697 4.97415 5.01045 5.08340 5.20721 5.26102 5.32254 5.34658 5.36868 5.41493 5.51040 5.55637 5.67391 5.74653 5.77271 5.83433 5.90253 5.96136 6.01352 6.02242 6.09747 6.20341 6.32746 6.40435 6.47196 6.67591 6.74042 6.90063 6.97313 7.31649 7.65194 7.69630 7.74793 8.23174 8.32434 8.41454 9.16300 9.78521 10.27016 11.24481 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006468 B = 0.004764 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4328.171044 B = 5875.916223 C = 9609.003121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.234 4.234 5 C 0.005 3.995 6 C -0.023 4.023 7 C -0.142 4.142 8 C 0.523 3.477 9 O -0.551 6.551 10 N -0.603 5.603 11 C 0.081 3.919 12 C 0.141 3.859 13 N -0.598 5.598 14 C 0.162 3.838 15 C -0.258 4.258 16 H 0.068 0.932 17 C 0.007 3.993 18 N -0.907 5.907 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.144 3.856 24 C -0.166 4.166 25 C -0.167 4.167 26 O 0.102 5.898 27 N -0.410 5.410 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.177 0.823 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.030 0.970 41 H 0.044 0.956 42 H -0.003 1.003 43 H 0.254 0.746 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.059 0.941 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -1.856 14.030 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.192 6.192 3 C 0.009 3.991 4 C -0.255 4.255 5 C -0.059 4.059 6 C -0.061 4.061 7 C -0.182 4.182 8 C 0.311 3.689 9 O -0.431 6.431 10 N -0.335 5.335 11 C -0.044 4.044 12 C 0.012 3.988 13 N -0.321 5.321 14 C 0.018 3.982 15 C -0.387 4.387 16 H 0.085 0.915 17 C -0.192 4.192 18 N -0.551 5.551 19 Si 0.731 3.269 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.041 3.959 24 C -0.224 4.224 25 C -0.225 4.225 26 O 0.042 5.958 27 N -0.136 5.136 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.195 0.805 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.015 0.985 43 H 0.064 0.936 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.779 -1.624 14.350 14.706 hybrid contribution -0.596 -1.079 -0.546 1.349 sum 2.182 -2.703 13.804 14.235 Atomic orbital electron populations 1.23049 0.76993 1.03921 1.02385 1.86173 1.22484 1.21066 1.89468 1.22009 0.90966 0.85676 1.00409 1.21772 0.94234 0.95724 1.13815 1.24352 0.88354 0.93219 0.99984 1.19931 0.88414 1.00234 0.97534 1.21742 0.97149 1.02212 0.97122 1.20335 0.85304 0.79925 0.83312 1.90597 1.66990 1.53990 1.31510 1.48289 1.20502 1.57852 1.06888 1.22853 0.97554 1.01192 0.82764 1.21186 0.94302 0.94180 0.89115 1.43928 1.20849 1.67742 0.99609 1.20840 0.95055 0.94998 0.87334 1.19138 0.92467 1.22788 1.04353 0.91457 1.25021 0.97822 0.97844 0.98507 1.70031 1.32275 1.40226 1.12586 0.86386 0.84682 0.78672 0.77129 1.20946 1.21555 1.20934 1.20974 0.82932 0.92077 0.99931 1.22205 1.01450 0.95600 1.03187 1.22180 0.98371 0.99712 1.02254 1.84809 1.12266 1.29945 1.68776 1.74127 1.15743 0.96703 1.27066 0.92396 0.92117 0.87800 0.80509 0.87723 0.88231 0.87546 0.88205 0.91015 0.89983 0.93752 0.94210 0.95120 0.93738 0.98471 0.93607 0.89862 0.90424 0.92509 0.92596 0.92982 0.92163 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.73 101.05 1.08 1.41 16 2 O -0.29 -3.86 10.57 -18.85 -0.20 -4.06 16 3 C 0.21 3.03 8.01 -16.66 -0.13 2.89 16 4 C -0.23 -2.95 11.10 -39.23 -0.44 -3.38 16 5 C 0.00 0.06 6.73 -35.37 -0.24 -0.18 16 6 C -0.02 -0.25 5.08 -27.88 -0.14 -0.39 16 7 C -0.14 -1.80 4.23 -27.88 -0.12 -1.92 16 8 C 0.52 7.36 7.05 -10.99 -0.08 7.28 16 9 O -0.55 -8.47 12.27 5.56 0.07 -8.40 16 10 N -0.60 -8.52 2.42 -166.11 -0.40 -8.92 16 11 C 0.08 1.33 5.60 -4.04 -0.02 1.30 16 12 C 0.14 2.63 6.03 -4.04 -0.02 2.61 16 13 N -0.60 -14.02 2.92 -181.11 -0.53 -14.55 16 14 C 0.16 3.78 9.01 59.85 0.54 4.32 16 15 C -0.26 -6.69 9.67 -15.06 -0.15 -6.84 16 16 H 0.07 1.72 7.84 -52.49 -0.41 1.31 16 17 C 0.01 0.18 5.15 -17.43 -0.09 0.09 16 18 N -0.91 -25.29 10.59 55.49 0.59 -24.70 16 19 Si 0.90 21.47 29.57 -169.99 -5.03 16.45 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.14 1.83 3.28 -67.93 -0.22 1.61 16 24 C -0.17 -2.05 9.04 37.16 0.34 -1.72 16 25 C -0.17 -1.96 9.15 37.16 0.34 -1.62 16 26 O 0.10 1.51 11.19 17.06 0.19 1.70 16 27 N -0.41 -6.39 11.54 30.38 0.35 -6.04 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.18 1.78 8.06 -52.48 -0.42 1.35 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 34 H 0.11 1.47 7.70 -51.93 -0.40 1.07 16 35 H 0.10 1.23 7.34 -51.93 -0.38 0.85 16 36 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 37 H 0.08 1.43 6.31 -51.93 -0.33 1.10 16 38 H 0.04 0.83 7.59 -51.93 -0.39 0.44 16 39 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 40 H 0.03 0.76 7.36 -51.93 -0.38 0.38 16 41 H 0.04 1.13 7.28 -51.93 -0.38 0.75 16 42 H 0.00 -0.07 7.84 -51.93 -0.41 -0.47 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.08 1.02 7.79 -51.93 -0.40 0.61 16 45 H 0.08 1.07 6.29 -51.93 -0.33 0.75 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 1.02 6.14 -51.93 -0.32 0.70 16 LS Contribution 407.06 15.07 6.13 6.13 Total: -1.00 -30.36 407.06 -6.48 -36.84 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.31 Total: 0.09 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 0.65 Total: 5.47 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.01 Total: -54.21 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.06 Total: -10.77 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.36 -6.48 -36.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734551235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.289 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds