Wall clock time and date at job start Sat Apr 11 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35714 * 117.00430 * 2 1 4 4 C 1.41930 * 126.88372 * 180.30124 * 3 2 1 5 5 C 1.35268 * 103.96310 * 180.11590 * 4 3 2 6 6 C 1.50695 * 126.71136 * 179.87609 * 5 4 3 7 7 C 1.53004 * 109.46870 * 89.71098 * 6 5 4 8 8 C 1.50702 * 109.47114 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99957 * 355.40871 * 8 7 6 10 10 N 1.34774 * 120.00002 * 175.14171 * 8 7 6 11 11 C 1.46498 * 120.00026 * 5.35021 * 10 8 7 12 12 C 1.53000 * 109.47012 * 90.00400 * 11 10 8 13 13 N 1.46498 * 109.47012 * 180.02562 * 12 11 10 14 14 C 1.46510 * 120.00128 * 269.99925 * 13 12 11 15 15 C 1.36940 * 120.00371 * 89.99721 * 13 12 11 16 16 H 1.08001 * 119.99065 * 23.31942 * 15 13 12 17 17 C 1.38810 * 120.00259 * 203.31400 * 15 13 12 18 18 N 1.31616 * 120.00235 * 10.50317 * 17 15 13 19 19 Si 1.86796 * 119.99762 * 190.50659 * 17 15 13 20 20 H 1.48494 * 109.47463 * 60.00085 * 19 17 15 21 21 H 1.48500 * 109.47210 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47167 * 299.99967 * 19 17 15 23 23 C 1.46501 * 119.99805 * 185.35620 * 10 8 7 24 24 C 1.52997 * 109.47015 * 298.55639 * 23 10 8 25 25 C 1.52999 * 109.47323 * 58.56061 * 23 10 8 26 26 O 1.34086 * 106.57769 * 359.61581 * 5 4 3 27 27 N 1.20915 * 111.71966 * 0.26508 * 26 5 4 28 28 H 1.09001 * 109.47076 * 300.00472 * 1 2 3 29 29 H 1.09002 * 109.47085 * 59.99881 * 1 2 3 30 30 H 1.08993 * 109.47447 * 180.02562 * 1 2 3 31 31 H 1.08005 * 128.01792 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.47101 * 329.71859 * 6 5 4 33 33 H 1.08995 * 109.47479 * 209.70947 * 6 5 4 34 34 H 1.09005 * 109.47296 * 60.00151 * 7 6 5 35 35 H 1.08998 * 109.47359 * 299.99875 * 7 6 5 36 36 H 1.08999 * 109.47217 * 210.00643 * 11 10 8 37 37 H 1.08999 * 109.47489 * 330.00154 * 11 10 8 38 38 H 1.08994 * 109.46965 * 299.99535 * 12 11 10 39 39 H 1.08999 * 109.47215 * 60.00361 * 12 11 10 40 40 H 1.09000 * 109.46925 * 94.90963 * 14 13 12 41 41 H 1.09000 * 109.47034 * 214.91393 * 14 13 12 42 42 H 1.08999 * 109.46389 * 334.91868 * 14 13 12 43 43 H 0.96993 * 119.99854 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.46989 * 178.55917 * 23 10 8 45 45 H 1.09002 * 109.47023 * 65.67493 * 24 23 10 46 46 H 1.09002 * 109.46926 * 185.67272 * 24 23 10 47 47 H 1.08995 * 109.47347 * 305.67781 * 24 23 10 48 48 H 1.09002 * 109.47423 * 63.81181 * 25 23 10 49 49 H 1.08999 * 109.47221 * 183.81296 * 25 23 10 50 50 H 1.09002 * 109.47035 * 303.81282 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4434 1.4527 -0.0060 5 6 3.5398 2.8019 -0.0005 6 6 4.8089 3.6144 -0.0008 7 6 5.2382 3.8894 -1.4434 8 6 6.5077 4.7014 -1.4437 9 8 6.9735 5.0988 -0.3968 10 7 7.1283 4.9813 -2.6068 11 6 6.5092 4.5983 -3.8781 12 6 5.6177 5.7381 -4.3750 13 7 4.9982 5.3548 -5.6460 14 6 5.6725 5.6586 -6.9107 15 6 3.7887 4.7126 -5.6520 16 1 3.1199 4.8131 -4.8100 17 6 3.4224 3.9326 -6.7403 18 7 4.3086 3.6403 -7.6685 19 14 1.6718 3.2979 -6.8874 20 1 0.7314 4.4461 -6.9363 21 1 1.5389 2.4955 -8.1298 22 1 1.3533 2.4470 -5.7127 23 6 8.4222 5.6684 -2.5998 24 6 8.2638 7.0473 -1.9559 25 6 9.4328 4.8447 -1.7992 26 8 2.2852 3.2751 -0.0008 27 7 1.4701 2.3819 -0.0004 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.2447 0.7286 -0.0118 32 1 5.5949 3.0607 0.5129 33 1 4.6352 4.5599 0.5130 34 1 4.4522 4.4430 -1.9571 35 1 5.4119 2.9439 -1.9572 36 1 7.2869 4.3974 -4.6150 37 1 5.9061 3.7020 -3.7331 38 1 4.8401 5.9388 -3.6382 39 1 6.2209 6.6343 -4.5202 40 1 6.2530 4.7931 -7.2299 41 1 4.9286 5.8977 -7.6708 42 1 6.3375 6.5111 -6.7722 43 1 4.0527 3.0949 -8.4287 44 1 8.7776 5.7842 -3.6237 45 1 8.0059 6.9294 -0.9034 46 1 9.2007 7.5978 -2.0410 47 1 7.4719 7.5970 -2.4646 48 1 9.5966 3.8882 -2.2956 49 1 10.3759 5.3877 -1.7366 50 1 9.0461 4.6714 -0.7949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734551235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:08 Heat of formation + Delta-G solvation = -4.343700 kcal Electronic energy + Delta-G solvation = -30681.429294 eV Core-core repulsion = 26520.164246 eV Total energy + Delta-G solvation = -4161.265048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.95517 -41.21940 -39.86795 -37.95033 -36.87946 -35.71889 -34.21080 -33.75974 -32.87879 -31.19241 -29.33908 -28.57261 -27.97722 -27.87070 -26.24571 -25.02051 -24.46278 -22.95901 -22.30102 -21.96701 -19.69023 -18.89543 -18.77630 -18.71284 -17.80271 -17.64955 -17.05861 -16.94853 -16.54738 -16.48684 -16.04990 -15.53331 -15.34262 -15.17128 -14.90983 -14.69776 -14.52583 -14.29612 -14.07737 -13.94975 -13.64681 -13.28007 -13.15714 -13.07393 -12.95818 -12.87590 -12.81322 -12.74655 -12.68057 -12.46488 -12.40773 -12.07850 -12.05962 -12.00277 -11.96682 -11.85878 -11.44562 -10.66894 -10.64983 -10.40878 -10.27181 -9.69233 -8.71883 -7.82177 -5.30017 0.36463 1.20257 1.44914 1.46718 1.52017 1.69577 1.74053 1.99741 2.23714 2.51161 3.16226 3.33131 3.48439 3.81918 3.88517 3.90553 3.96246 4.08862 4.16751 4.19165 4.22002 4.23772 4.26590 4.42600 4.44882 4.55392 4.61209 4.62865 4.71177 4.77505 4.83504 4.85920 4.89617 4.95910 5.00299 5.04094 5.06692 5.08518 5.27726 5.36964 5.38579 5.45863 5.66329 5.77302 5.82344 5.91180 6.33367 6.52576 7.17357 7.17740 7.26969 7.88232 8.31036 9.20498 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006468 B = 0.004764 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4328.171044 B = 5875.916223 C = 9609.003121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.295 6.295 3 C 0.193 3.807 4 C -0.234 4.234 5 C 0.008 3.992 6 C -0.012 4.012 7 C -0.139 4.139 8 C 0.524 3.476 9 O -0.560 6.560 10 N -0.601 5.601 11 C 0.102 3.898 12 C 0.143 3.857 13 N -0.613 5.613 14 C 0.175 3.825 15 C -0.256 4.256 16 H 0.068 0.932 17 C -0.042 4.042 18 N -0.932 5.932 19 Si 0.953 3.047 20 H -0.282 1.282 21 H -0.294 1.294 22 H -0.282 1.282 23 C 0.136 3.864 24 C -0.159 4.159 25 C -0.159 4.159 26 O 0.087 5.913 27 N -0.433 5.433 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.136 0.864 31 H 0.203 0.797 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.010 0.990 41 H 0.014 0.986 42 H 0.030 0.970 43 H 0.248 0.752 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.078 0.922 47 H 0.046 0.954 48 H 0.052 0.948 49 H 0.079 0.921 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 -1.894 15.129 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.202 6.202 3 C -0.004 4.004 4 C -0.256 4.256 5 C -0.055 4.055 6 C -0.050 4.050 7 C -0.179 4.179 8 C 0.313 3.687 9 O -0.440 6.440 10 N -0.334 5.334 11 C -0.024 4.024 12 C 0.016 3.984 13 N -0.337 5.337 14 C 0.030 3.970 15 C -0.386 4.386 16 H 0.085 0.915 17 C -0.237 4.237 18 N -0.579 5.579 19 Si 0.783 3.217 20 H -0.208 1.208 21 H -0.220 1.220 22 H -0.209 1.209 23 C 0.034 3.966 24 C -0.217 4.217 25 C -0.217 4.217 26 O 0.028 5.972 27 N -0.162 5.162 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.154 0.846 31 H 0.220 0.780 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.029 0.971 41 H 0.033 0.967 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.768 -1.639 15.491 16.026 hybrid contribution -0.866 -0.997 -0.813 1.551 sum 2.902 -2.636 14.677 15.192 Atomic orbital electron populations 1.23292 0.75511 1.05984 1.02031 1.86167 1.24056 1.20643 1.89356 1.22403 0.91943 0.85844 1.00238 1.22159 0.94127 0.96184 1.13107 1.24624 0.88048 0.93485 0.99379 1.19928 0.88042 1.00503 0.96553 1.21701 0.96074 1.01934 0.98180 1.20493 0.85445 0.79710 0.83046 1.90604 1.67348 1.54347 1.31719 1.48226 1.21063 1.58078 1.06014 1.22333 0.96937 0.99449 0.83638 1.21256 0.94650 0.95358 0.87143 1.44095 1.20813 1.67604 1.01196 1.20600 0.94296 0.95304 0.86766 1.19371 0.93549 1.21780 1.03897 0.91454 1.25591 1.00516 0.98861 0.98770 1.70166 1.33434 1.41304 1.12988 0.85563 0.81522 0.77999 0.76661 1.20800 1.21971 1.20855 1.21194 0.82356 0.92316 1.00770 1.22134 1.02291 0.95465 1.01854 1.22103 0.98806 0.99862 1.00955 1.84767 1.13080 1.30114 1.69230 1.74106 1.16547 0.97265 1.28302 0.92055 0.93155 0.84566 0.78035 0.85863 0.87932 0.88835 0.87828 0.91204 0.91043 0.93897 0.92772 0.97132 0.96671 0.95178 0.94282 0.88981 0.91986 0.90330 0.93445 0.92935 0.90187 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.73 113.37 1.22 1.73 16 2 O -0.30 -7.77 10.57 -90.35 -0.95 -8.72 16 3 C 0.19 5.54 8.01 85.79 0.69 6.22 16 4 C -0.23 -5.60 11.10 22.50 0.25 -5.35 16 5 C 0.01 0.19 6.73 25.00 0.17 0.36 16 6 C -0.01 -0.24 5.08 29.85 0.15 -0.09 16 7 C -0.14 -3.34 4.23 29.85 0.13 -3.21 16 8 C 0.52 13.92 7.05 87.66 0.62 14.54 16 9 O -0.56 -16.24 12.27 -3.04 -0.04 -16.28 16 10 N -0.60 -15.95 2.42 -797.84 -1.93 -17.89 16 11 C 0.10 3.18 5.60 86.38 0.48 3.67 16 12 C 0.14 5.15 6.03 86.38 0.52 5.67 16 13 N -0.61 -28.35 2.92 -726.92 -2.13 -30.47 16 14 C 0.18 8.08 9.01 127.77 1.15 9.23 16 15 C -0.26 -13.20 9.67 84.03 0.81 -12.39 16 16 H 0.07 3.42 7.84 -2.91 -0.02 3.40 16 17 C -0.04 -2.24 5.15 84.86 0.44 -1.80 16 18 N -0.93 -52.60 10.59 21.65 0.23 -52.37 16 19 Si 0.95 44.37 29.57 68.60 2.03 46.40 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 C 0.14 3.14 3.28 44.99 0.15 3.29 16 24 C -0.16 -3.57 9.04 71.98 0.65 -2.92 16 25 C -0.16 -3.35 9.15 71.98 0.66 -2.69 16 26 O 0.09 2.55 11.19 71.21 0.80 3.34 16 27 N -0.43 -13.50 11.54 -172.60 -1.99 -15.49 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.20 3.60 8.06 -2.91 -0.02 3.57 16 32 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.10 2.05 8.05 -2.39 -0.02 2.03 16 34 H 0.09 2.52 7.70 -2.38 -0.02 2.50 16 35 H 0.10 2.42 7.34 -2.39 -0.02 2.41 16 36 H 0.07 2.24 7.91 -2.39 -0.02 2.23 16 37 H 0.07 2.41 6.31 -2.39 -0.02 2.40 16 38 H 0.04 1.56 7.59 -2.39 -0.02 1.54 16 39 H 0.05 1.80 7.86 -2.39 -0.02 1.78 16 40 H 0.01 0.52 7.36 -2.39 -0.02 0.50 16 41 H 0.01 0.75 7.28 -2.39 -0.02 0.73 16 42 H 0.03 1.16 7.84 -2.39 -0.02 1.14 16 43 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 44 H 0.09 1.99 7.79 -2.38 -0.02 1.97 16 45 H 0.06 1.60 6.29 -2.39 -0.02 1.58 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.06 1.49 6.14 -2.39 -0.01 1.48 16 Total: -1.00 -64.64 407.06 5.01 -59.63 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.92 Total: 15.59 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 8.08 Total: 16.26 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -5.82 Total: -116.22 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.20 Total: -21.65 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.64 5.01 -59.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734551235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.285 kcal (2) G-P(sol) polarization free energy of solvation -64.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds