Wall clock time and date at job start Sat Apr 11 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34226 * 117.00367 * 2 1 4 4 O 1.20833 * 119.99985 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00241 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.29062 * 60.68230 * 5 3 2 7 7 C 1.53998 * 110.32616 * 298.54735 * 5 3 2 8 8 N 1.47481 * 107.08431 * 242.41076 * 7 5 3 9 9 C 1.34774 * 127.03399 * 154.51725 * 8 7 5 10 10 O 1.21591 * 120.00380 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00057 * 359.75053 * 9 8 7 12 12 C 1.46504 * 120.00404 * 180.27752 * 11 9 8 13 13 C 1.53041 * 109.45713 * 275.06923 * 12 11 9 14 14 C 1.53193 * 109.31287 * 178.61058 * 13 12 11 15 15 N 1.46929 * 108.77260 * 54.63539 * 14 13 12 16 16 C 1.36937 * 120.62893 * 126.41436 * 15 14 13 17 17 H 1.08005 * 119.99829 * 207.65989 * 16 15 14 18 18 C 1.38811 * 120.00173 * 27.66162 * 16 15 14 19 19 N 1.31621 * 119.99793 * 17.36681 * 18 16 15 20 20 Si 1.86801 * 120.00049 * 197.36357 * 18 16 15 21 21 H 1.48500 * 109.46986 * 60.00441 * 20 18 16 22 22 H 1.48503 * 109.47081 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47071 * 300.00199 * 20 18 16 24 24 C 1.46923 * 118.73748 * 306.38814 * 15 14 13 25 25 C 1.53036 * 109.46458 * 154.99947 * 12 11 9 26 26 C 1.48118 * 105.93423 * 334.78166 * 8 7 5 27 27 C 1.54598 * 103.41991 * 39.02056 * 26 8 7 28 28 H 1.09002 * 110.57393 * 81.17302 * 27 26 8 29 29 C 1.53004 * 110.83398 * 204.44590 * 27 26 8 30 30 H 1.09007 * 109.46758 * 299.99786 * 1 2 3 31 31 H 1.08998 * 109.47678 * 59.99390 * 1 2 3 32 32 H 1.08998 * 109.47690 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.91151 * 123.05477 * 7 5 3 34 34 H 1.08998 * 110.07799 * 1.86419 * 7 5 3 35 35 H 0.97005 * 120.00195 * 0.27715 * 11 9 8 36 36 H 1.08997 * 109.45811 * 35.02688 * 12 11 9 37 37 H 1.08998 * 109.50270 * 298.56378 * 13 12 11 38 38 H 1.09001 * 109.50036 * 58.66072 * 13 12 11 39 39 H 1.09002 * 109.59041 * 294.84934 * 14 13 12 40 40 H 1.09003 * 109.58981 * 174.42179 * 14 13 12 41 41 H 0.97005 * 119.99754 * 179.97438 * 19 18 16 42 42 H 1.08991 * 109.59074 * 293.82234 * 24 15 14 43 43 H 1.09008 * 109.58353 * 173.39708 * 24 15 14 44 44 H 1.09000 * 109.49847 * 301.34021 * 25 12 11 45 45 H 1.09000 * 109.49456 * 61.39970 * 25 12 11 46 46 H 1.08998 * 110.66269 * 157.50512 * 26 8 7 47 47 H 1.09003 * 110.66061 * 280.62544 * 26 8 7 48 48 H 1.08995 * 109.47050 * 173.56352 * 29 27 26 49 49 H 1.09001 * 109.47270 * 293.56507 * 29 27 26 50 50 H 1.09006 * 109.46556 * 53.55847 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9697 0.7948 -0.8923 7 6 4.1372 0.6133 1.2676 8 7 4.8462 1.6634 2.0223 9 6 5.0792 1.6924 3.3494 10 8 5.6808 2.6278 3.8409 11 7 4.6406 0.6871 4.1326 12 6 4.8885 0.7214 5.5761 13 6 6.2776 0.1495 5.8686 14 6 6.5472 0.2189 7.3750 15 7 5.4536 -0.4604 8.0829 16 6 5.7186 -1.4576 8.9833 17 1 4.9878 -2.2328 9.1610 18 6 6.9262 -1.4721 9.6675 19 7 7.6639 -0.3835 9.7236 20 14 7.5045 -3.0366 10.5086 21 1 7.6510 -4.1160 9.4994 22 1 8.8143 -2.7912 11.1639 23 1 6.5082 -3.4464 11.5307 24 6 4.0704 -0.0491 7.8069 25 6 3.8285 -0.1156 6.2957 26 6 5.2443 2.6830 1.0243 27 6 4.0270 2.7488 0.0735 28 1 3.2436 3.3772 0.4972 29 6 4.4428 3.2567 -1.3086 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 4.8326 -0.1794 0.9919 34 1 3.3282 0.2035 1.8723 35 1 4.1607 -0.0592 3.7406 36 1 4.8386 1.7516 5.9287 37 1 6.3205 -0.8885 5.5388 38 1 7.0302 0.7319 5.3371 39 1 6.5946 1.2613 7.6901 40 1 7.4917 -0.2764 7.6004 41 1 8.5077 -0.3935 10.2021 42 1 3.9157 0.9713 8.1572 43 1 3.3805 -0.7214 8.3173 44 1 2.8379 0.2781 6.0681 45 1 3.8940 -1.1510 5.9614 46 1 5.4088 3.6476 1.5045 47 1 6.1354 2.3644 0.4833 48 1 3.5961 3.1865 -1.9913 49 1 4.7632 4.2958 -1.2326 50 1 5.2656 2.6495 -1.6863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591932698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:36 Heat of formation + Delta-G solvation = -111.384712 kcal Electronic energy + Delta-G solvation = -30553.493187 eV Core-core repulsion = 26387.586492 eV Total energy + Delta-G solvation = -4165.906695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.05351 -41.14118 -39.52998 -38.54438 -37.45941 -36.01565 -34.35204 -33.49435 -31.72100 -31.60811 -31.11601 -28.47541 -27.65083 -26.53701 -25.38254 -23.91230 -23.59600 -22.64880 -21.29128 -20.91270 -20.83685 -19.27416 -18.72285 -18.54974 -17.92723 -17.58516 -17.22044 -16.82275 -16.66826 -15.93087 -15.60098 -15.38600 -15.33455 -15.12604 -14.77124 -14.64122 -14.44392 -14.25728 -14.10547 -13.96255 -13.54054 -13.41961 -13.27517 -13.18178 -13.00247 -12.87667 -12.66810 -12.55078 -12.21918 -12.14297 -12.07822 -12.05900 -11.86456 -11.83628 -11.74743 -11.55194 -11.54499 -11.44993 -11.21758 -10.56885 -10.18638 -9.59481 -8.71774 -7.86418 -5.32584 1.06005 1.45968 1.48789 1.51716 1.58298 1.68858 2.09504 2.52817 2.87542 3.23842 3.29954 3.40582 3.66645 3.73647 3.86452 3.98949 4.08050 4.13239 4.27668 4.31220 4.32734 4.33600 4.43190 4.47384 4.53753 4.61803 4.66933 4.70635 4.75308 4.78994 4.85045 4.86238 4.99966 5.01791 5.06515 5.09928 5.18075 5.22907 5.31048 5.34157 5.41923 5.45833 5.56981 5.64472 5.70121 5.99935 6.39044 6.64282 6.93636 7.13818 7.52631 7.84747 8.37830 9.20708 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.002410 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.698461 B =11615.565369 C =12488.502947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.468 3.532 4 O -0.534 6.534 5 C -0.084 4.084 6 H 0.164 0.836 7 C 0.110 3.890 8 N -0.644 5.644 9 C 0.719 3.281 10 O -0.634 6.634 11 N -0.724 5.724 12 C 0.180 3.820 13 C -0.128 4.128 14 C 0.183 3.817 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.075 0.925 18 C -0.055 4.055 19 N -0.939 5.939 20 Si 0.971 3.029 21 H -0.275 1.275 22 H -0.298 1.298 23 H -0.273 1.273 24 C 0.142 3.858 25 C -0.120 4.120 26 C 0.124 3.876 27 C -0.089 4.089 28 H 0.073 0.927 29 C -0.135 4.135 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.132 0.868 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.408 0.592 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.044 0.956 39 H -0.013 1.013 40 H 0.057 0.943 41 H 0.249 0.751 42 H 0.010 0.990 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.099 0.901 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.296 -1.057 -27.967 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.312 3.688 4 O -0.423 6.423 5 C -0.103 4.103 6 H 0.182 0.818 7 C -0.013 4.013 8 N -0.382 5.382 9 C 0.421 3.579 10 O -0.515 6.515 11 N -0.378 5.378 12 C 0.075 3.925 13 C -0.168 4.168 14 C 0.056 3.944 15 N -0.332 5.332 16 C -0.393 4.393 17 H 0.092 0.908 18 C -0.250 4.250 19 N -0.585 5.585 20 Si 0.798 3.202 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.199 1.199 24 C 0.016 3.984 25 C -0.160 4.160 26 C 0.001 3.999 27 C -0.109 4.109 28 H 0.091 0.909 29 C -0.193 4.193 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.150 0.850 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.244 0.756 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.005 0.995 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.117 0.883 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.960 -0.093 -27.395 29.892 hybrid contribution 0.120 -0.386 0.869 0.958 sum -11.840 -0.479 -26.526 29.052 Atomic orbital electron populations 1.23541 0.74895 1.05739 1.02350 1.86502 1.24798 1.32438 1.83499 1.23880 0.92420 0.81275 0.71213 1.90680 1.67763 1.37512 1.46349 1.22196 0.86434 0.99239 1.02472 0.81818 1.22151 0.97424 0.90617 0.91094 1.47866 1.60419 1.25874 1.04053 1.15592 0.79368 0.82664 0.80250 1.90916 1.49099 1.37807 1.73670 1.45136 1.61224 1.24046 1.07417 1.20543 0.94900 0.99038 0.78056 1.22303 0.96749 1.00183 0.97608 1.20473 0.92486 0.93414 0.87984 1.44356 1.01159 1.41418 1.46316 1.19549 1.02491 1.01629 1.15585 0.90751 1.25887 1.00038 0.99693 0.99393 1.70215 1.14606 1.27651 1.46052 0.85292 0.76962 0.79578 0.78319 1.20138 1.22428 1.19852 1.21028 0.86349 0.97206 0.93785 1.22133 0.97639 1.00250 0.95959 1.22530 0.97588 0.92010 0.87735 1.22211 0.97037 0.93635 0.97970 0.90900 1.21723 1.02314 1.02278 0.92978 0.92595 0.91724 0.85017 0.86863 0.90289 0.75593 0.92877 0.91880 0.93775 0.99451 0.92493 0.94169 0.97185 0.91202 0.89452 0.90393 0.91471 0.88276 0.91938 0.91603 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.47 16 2 O -0.36 -4.78 10.49 -51.38 -0.54 -5.31 16 3 C 0.47 7.53 7.05 71.24 0.50 8.03 16 4 O -0.53 -12.31 15.20 21.94 0.33 -11.98 16 5 C -0.08 -0.92 3.08 -10.65 -0.03 -0.95 16 6 H 0.16 0.61 7.85 -2.39 -0.02 0.59 16 7 C 0.11 1.43 6.29 86.53 0.54 1.97 16 8 N -0.64 -14.21 3.29 -828.05 -2.73 -16.94 16 9 C 0.72 22.81 8.50 179.06 1.52 24.34 16 10 O -0.63 -26.72 16.21 -4.00 -0.06 -26.78 16 11 N -0.72 -20.54 5.05 -457.69 -2.31 -22.85 16 12 C 0.18 6.40 2.41 45.02 0.11 6.51 16 13 C -0.13 -5.29 5.65 30.67 0.17 -5.12 16 14 C 0.18 9.43 5.31 86.36 0.46 9.89 16 15 N -0.61 -31.02 2.99 -699.09 -2.09 -33.12 16 16 C -0.26 -14.42 9.59 84.03 0.81 -13.61 16 17 H 0.07 3.88 7.89 -2.91 -0.02 3.85 16 18 C -0.06 -3.11 4.91 84.86 0.42 -2.70 16 19 N -0.94 -57.27 11.19 21.65 0.24 -57.03 16 20 Si 0.97 45.01 29.59 68.60 2.03 47.04 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 C 0.14 5.82 6.52 86.36 0.56 6.38 16 25 C -0.12 -3.81 5.55 30.67 0.17 -3.64 16 26 C 0.12 2.23 6.52 86.61 0.56 2.80 16 27 C -0.09 -1.25 2.98 -9.70 -0.03 -1.28 16 28 H 0.07 1.49 6.92 -2.39 -0.02 1.47 16 29 C -0.14 -1.19 9.16 71.98 0.66 -0.53 16 30 H 0.06 0.66 8.13 -2.38 -0.02 0.64 16 31 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 32 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.08 1.02 6.79 -2.39 -0.02 1.00 16 35 H 0.41 8.61 7.17 -92.70 -0.66 7.95 16 36 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 37 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 39 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 40 H 0.06 3.28 6.04 -2.39 -0.01 3.27 16 41 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.07 2.68 7.93 -2.38 -0.02 2.66 16 44 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.07 1.55 7.85 -2.39 -0.02 1.53 16 47 H 0.10 1.32 8.01 -2.39 -0.02 1.30 16 48 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.08 0.39 8.10 -2.38 -0.02 0.37 16 Total: -1.00 -79.97 397.52 2.76 -77.21 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.27 Total: 16.20 kcal Atomic # 6 Polarization: 25.93 SS G_CDS: 7.62 Total: 33.55 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -6.89 Total: -129.93 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.27 Total: -44.08 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -79.97 2.76 -77.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591932698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.176 kcal (2) G-P(sol) polarization free energy of solvation -79.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds