Wall clock time and date at job start Sat Apr 11 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46800 * 2 1 4 4 C 1.54806 * 109.47081 * 240.00954 * 2 1 3 5 5 N 1.45118 * 109.53002 * 172.10539 * 4 2 1 6 6 C 1.34785 * 118.75557 * 269.29213 * 5 4 2 7 7 O 1.21350 * 119.99903 * 4.62507 * 6 5 4 8 8 C 1.49450 * 119.99869 * 184.35291 * 6 5 4 9 9 O 1.21350 * 119.99629 * 275.80697 * 8 6 5 10 10 N 1.34771 * 120.00209 * 95.80780 * 8 6 5 11 11 C 1.47077 * 120.88336 * 4.51492 * 10 8 6 12 12 C 1.53692 * 108.27757 * 128.75384 * 11 10 8 13 13 N 1.46901 * 109.25766 * 54.08109 * 12 11 10 14 14 C 1.46897 * 111.00037 * 172.60499 * 13 12 11 15 15 C 1.50697 * 109.47037 * 51.60713 * 14 13 12 16 16 H 1.07999 * 120.00163 * 5.13258 * 15 14 13 17 17 C 1.37879 * 120.00322 * 185.12456 * 15 14 13 18 18 N 1.31525 * 119.99492 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00471 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46810 * 60.00155 * 19 17 15 21 21 H 1.48498 * 109.47249 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47096 * 300.00402 * 19 17 15 23 23 C 1.46894 * 111.27059 * 296.75655 * 13 12 11 24 24 C 1.47084 * 120.87818 * 184.79245 * 10 8 6 25 25 C 1.47508 * 122.48998 * 89.56955 * 5 4 2 26 26 C 1.53941 * 110.81765 * 317.97655 * 25 5 4 27 27 C 1.51535 * 109.72904 * 320.30017 * 26 25 5 28 28 O 1.38014 * 109.47170 * 119.99124 * 2 1 3 29 29 H 1.08997 * 109.46846 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47425 * 299.98942 * 1 2 3 31 31 H 1.09002 * 109.47076 * 59.99183 * 1 2 3 32 32 H 1.08997 * 109.46025 * 52.08678 * 4 2 1 33 33 H 1.08993 * 109.45152 * 292.11588 * 4 2 1 34 34 H 1.09003 * 109.62489 * 248.52637 * 11 10 8 35 35 H 1.09004 * 109.62811 * 9.10245 * 11 10 8 36 36 H 1.08996 * 109.65228 * 294.07815 * 12 11 10 37 37 H 1.09002 * 109.44437 * 173.95768 * 12 11 10 38 38 H 1.09005 * 109.47332 * 171.60877 * 14 13 12 39 39 H 1.08998 * 109.47400 * 291.60557 * 14 13 12 40 40 H 0.96998 * 119.99281 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.49649 * 303.14286 * 23 13 12 42 42 H 1.09002 * 109.51624 * 183.07327 * 23 13 12 43 43 H 1.09001 * 109.63248 * 350.89622 * 24 10 8 44 44 H 1.08995 * 109.62968 * 111.48040 * 24 10 8 45 45 H 1.09008 * 109.16539 * 78.49159 * 25 5 4 46 46 H 1.08997 * 109.16804 * 197.69234 * 25 5 4 47 47 H 1.09002 * 109.46379 * 200.17602 * 26 25 5 48 48 H 1.09001 * 109.28144 * 80.31935 * 26 25 5 49 49 H 1.09000 * 109.59142 * 331.51735 * 27 26 25 50 50 H 1.08998 * 109.59028 * 211.07628 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0460 -0.7296 -1.2641 5 7 3.4849 -0.5698 -1.3631 6 6 3.9749 0.4804 -2.0514 7 8 3.2193 1.3159 -2.5026 8 6 5.4491 0.6189 -2.2538 9 8 6.1337 1.1340 -1.3944 10 7 6.0182 0.1719 -3.3907 11 6 5.1964 -0.3653 -4.4858 12 6 5.6007 0.3471 -5.7862 13 7 7.0514 0.2183 -5.9783 14 6 7.4559 0.7319 -7.2938 15 6 6.9023 2.1207 -7.4828 16 1 6.3802 2.6087 -6.6730 17 6 7.0624 2.7684 -8.6893 18 7 7.6979 2.1739 -9.6756 19 14 6.3768 4.4902 -8.9234 20 1 6.9999 5.4093 -7.9374 21 1 6.6801 4.9611 -10.2987 22 1 4.9060 4.4692 -8.7199 23 6 7.7931 0.8874 -4.9012 24 6 7.4782 0.2027 -3.5669 25 6 4.4317 -1.5164 -0.7439 26 6 3.9603 -1.9185 0.6654 27 6 3.3881 -0.7097 1.3777 28 8 1.9900 -0.6504 1.1270 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.5716 -0.3037 -2.1482 33 1 1.8022 -1.7897 -1.1963 34 1 5.3704 -1.4370 -4.5824 35 1 4.1426 -0.1800 -4.2776 36 1 5.3344 1.4022 -5.7242 37 1 5.0804 -0.1105 -6.6276 38 1 8.5439 0.7633 -7.3528 39 1 7.0686 0.0770 -8.0743 40 1 7.8102 2.6295 -10.5245 41 1 7.4962 1.9350 -4.8514 42 1 8.8627 0.8215 -5.1002 43 1 7.9337 0.7637 -2.7509 44 1 7.8673 -0.8154 -3.5770 45 1 4.5068 -2.4071 -1.3678 46 1 5.4126 -1.0465 -0.6728 47 1 4.8050 -2.3084 1.2334 48 1 3.1927 -2.6880 0.5822 49 1 3.8652 0.1956 1.0023 50 1 3.5635 -0.8002 2.4497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601448661.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:41 Heat of formation + Delta-G solvation = -90.550597 kcal Electronic energy + Delta-G solvation = -31515.748559 eV Core-core repulsion = 27350.745299 eV Total energy + Delta-G solvation = -4165.003260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.33456 -39.83403 -38.51869 -37.55222 -35.91636 -34.62205 -33.96984 -32.39208 -30.97899 -30.68925 -28.64966 -27.72808 -26.39764 -25.51545 -24.02559 -23.22844 -22.36530 -21.72858 -21.53585 -20.07307 -18.78054 -18.03768 -17.16603 -17.08102 -16.69706 -16.44230 -16.25992 -15.64828 -15.07773 -14.91496 -14.81205 -14.50821 -14.36150 -14.03458 -13.95150 -13.83211 -13.51802 -13.23852 -13.19758 -12.85639 -12.68289 -12.33468 -12.30392 -12.01044 -11.90877 -11.72236 -11.59295 -11.38562 -11.26480 -11.09856 -11.06823 -10.88103 -10.72539 -10.69954 -10.35888 -9.98480 -9.92593 -9.71927 -9.55245 -9.03443 -8.70324 -8.49032 -7.35083 -6.09747 -4.19158 1.96739 2.02977 2.47118 3.16353 3.26932 3.31399 3.31543 3.35404 3.98897 4.25992 4.36742 4.40184 4.61130 4.72042 4.76437 4.79526 4.88938 5.07442 5.11085 5.16492 5.20159 5.22383 5.29748 5.35023 5.35655 5.40949 5.43563 5.57200 5.59540 5.62348 5.69608 5.70625 5.82970 5.83815 5.92207 6.11413 6.32354 6.48549 6.53775 6.63681 6.71531 7.11070 7.19904 7.29211 7.43702 7.58962 7.79185 7.81264 7.87693 8.10300 8.19860 8.90091 9.48717 10.95600 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.002841 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.674469 B = 9853.608411 C =10605.600226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 H 0.054 0.946 4 C 0.079 3.921 5 N -0.598 5.598 6 C 0.513 3.487 7 O -0.505 6.505 8 C 0.514 3.486 9 O -0.526 6.526 10 N -0.585 5.585 11 C 0.106 3.894 12 C 0.053 3.947 13 N -0.540 5.540 14 C 0.189 3.811 15 C -0.555 4.555 16 H 0.056 0.944 17 C 0.068 3.932 18 N -0.890 5.890 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.046 3.954 24 C 0.114 3.886 25 C 0.099 3.901 26 C -0.162 4.162 27 C 0.072 3.928 28 O -0.386 6.386 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.029 0.971 39 H 0.038 0.962 40 H 0.264 0.736 41 H 0.042 0.958 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.055 0.945 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 -11.684 20.043 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 H 0.072 0.928 4 C -0.044 4.044 5 N -0.334 5.334 6 C 0.296 3.704 7 O -0.378 6.378 8 C 0.296 3.704 9 O -0.402 6.402 10 N -0.319 5.319 11 C -0.017 4.017 12 C -0.076 4.076 13 N -0.265 5.265 14 C 0.064 3.936 15 C -0.594 4.594 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.528 5.528 19 Si 0.716 3.284 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.083 4.083 24 C -0.007 4.007 25 C -0.023 4.023 26 C -0.200 4.200 27 C -0.004 4.004 28 O -0.305 6.305 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.074 0.926 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.497 -11.527 20.167 25.095 hybrid contribution -0.257 2.017 -0.665 2.139 sum -9.755 -9.510 19.502 23.789 Atomic orbital electron populations 1.21715 0.92038 1.03020 1.02983 1.21997 0.95313 0.95275 0.84852 0.92782 1.22527 0.79272 1.02175 1.00407 1.47931 1.07092 1.25720 1.52633 1.20524 0.89377 0.81951 0.78583 1.90826 1.58218 1.39596 1.49152 1.20084 0.87833 0.79401 0.83036 1.90783 1.62370 1.43504 1.43551 1.48250 1.08741 1.59668 1.15232 1.22229 0.93826 0.98808 0.86799 1.22284 0.91082 0.99632 0.94648 1.62520 1.03390 1.55992 1.04576 1.19764 0.96313 0.93575 0.83980 1.21703 1.37379 1.01765 0.98542 0.92550 1.24943 0.94849 0.97890 0.95879 1.69931 1.41336 1.37830 1.03696 0.86703 0.79682 0.84727 0.77250 1.20224 1.21111 1.20140 1.22292 0.99357 0.96685 0.89983 1.21990 0.77924 1.01895 0.98929 1.22197 0.92496 0.93242 0.94361 1.22494 1.02535 0.99871 0.95097 1.22198 0.80787 0.97302 1.00086 1.86247 1.23493 1.76974 1.43819 0.91625 0.91503 0.90630 0.88606 0.89241 0.90332 0.90589 0.93194 0.89838 0.95331 0.94394 0.92659 0.93957 0.89983 0.89132 0.90448 0.90540 0.89385 0.89094 0.89875 0.92620 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.55 37.16 0.35 -0.70 16 2 C 0.09 0.83 3.25 -25.78 -0.08 0.75 16 3 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.08 0.75 4.83 -3.83 -0.02 0.73 16 5 N -0.60 -6.60 2.18 -172.75 -0.38 -6.97 16 6 C 0.51 7.61 5.59 -11.58 -0.06 7.55 16 7 O -0.50 -8.95 16.33 5.50 0.09 -8.86 16 8 C 0.51 8.23 5.64 -11.59 -0.07 8.17 16 9 O -0.53 -9.48 16.09 5.50 0.09 -9.39 16 10 N -0.59 -8.96 3.00 -172.69 -0.52 -9.48 16 11 C 0.11 1.55 6.51 -3.37 -0.02 1.53 16 12 C 0.05 0.98 5.02 -3.46 -0.02 0.97 16 13 N -0.54 -10.82 4.83 -235.47 -1.14 -11.96 16 14 C 0.19 4.64 5.19 -4.98 -0.03 4.62 16 15 C -0.56 -14.98 7.81 -34.44 -0.27 -15.24 16 16 H 0.06 1.54 5.90 -52.49 -0.31 1.23 16 17 C 0.07 1.88 5.46 -17.81 -0.10 1.78 16 18 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 C 0.05 0.84 5.35 -3.70 -0.02 0.82 16 24 C 0.11 1.71 6.61 -3.60 -0.02 1.69 16 25 C 0.10 0.85 6.04 -3.00 -0.02 0.83 16 26 C -0.16 -1.10 5.79 -26.98 -0.16 -1.26 16 27 C 0.07 0.62 6.38 36.42 0.23 0.85 16 28 O -0.39 -3.81 9.47 -26.53 -0.25 -4.07 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.98 7.34 -51.93 -0.38 0.59 16 33 H 0.09 0.68 8.11 -51.93 -0.42 0.25 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.08 6.27 -51.93 -0.33 0.75 16 36 H 0.05 1.08 6.41 -51.93 -0.33 0.75 16 37 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 38 H 0.03 0.74 7.92 -51.93 -0.41 0.33 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.04 0.89 7.42 -51.93 -0.39 0.50 16 42 H 0.08 1.44 7.96 -51.93 -0.41 1.02 16 43 H 0.09 1.34 7.04 -51.93 -0.37 0.98 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 46 H 0.09 0.88 6.08 -51.93 -0.32 0.56 16 47 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.53 8.01 -51.93 -0.42 0.12 16 49 H 0.06 0.59 7.41 -51.93 -0.38 0.21 16 50 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 388.78 15.07 5.86 5.86 Total: -1.00 -32.28 388.78 -9.07 -41.35 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.25 Total: -1.11 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: -0.29 Total: 13.09 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -1.30 Total: -53.38 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.07 Total: -22.32 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.28 -9.07 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601448661.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.197 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds