Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46800 * 2 1 4 4 C 1.54806 * 109.47081 * 240.00954 * 2 1 3 5 5 N 1.45118 * 109.53002 * 172.10539 * 4 2 1 6 6 C 1.34785 * 118.75557 * 269.29213 * 5 4 2 7 7 O 1.21350 * 119.99903 * 4.62507 * 6 5 4 8 8 C 1.49450 * 119.99869 * 184.35291 * 6 5 4 9 9 O 1.21350 * 119.99629 * 275.80697 * 8 6 5 10 10 N 1.34771 * 120.00209 * 95.80780 * 8 6 5 11 11 C 1.47077 * 120.88336 * 4.51492 * 10 8 6 12 12 C 1.53692 * 108.27757 * 128.75384 * 11 10 8 13 13 N 1.46901 * 109.25766 * 54.08109 * 12 11 10 14 14 C 1.46897 * 111.00037 * 172.60499 * 13 12 11 15 15 C 1.50697 * 109.47037 * 51.60713 * 14 13 12 16 16 H 1.07999 * 120.00163 * 5.13258 * 15 14 13 17 17 C 1.37879 * 120.00322 * 185.12456 * 15 14 13 18 18 N 1.31525 * 119.99492 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00471 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46810 * 60.00155 * 19 17 15 21 21 H 1.48498 * 109.47249 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47096 * 300.00402 * 19 17 15 23 23 C 1.46894 * 111.27059 * 296.75655 * 13 12 11 24 24 C 1.47084 * 120.87818 * 184.79245 * 10 8 6 25 25 C 1.47508 * 122.48998 * 89.56955 * 5 4 2 26 26 C 1.53941 * 110.81765 * 317.97655 * 25 5 4 27 27 C 1.51535 * 109.72904 * 320.30017 * 26 25 5 28 28 O 1.38014 * 109.47170 * 119.99124 * 2 1 3 29 29 H 1.08997 * 109.46846 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47425 * 299.98942 * 1 2 3 31 31 H 1.09002 * 109.47076 * 59.99183 * 1 2 3 32 32 H 1.08997 * 109.46025 * 52.08678 * 4 2 1 33 33 H 1.08993 * 109.45152 * 292.11588 * 4 2 1 34 34 H 1.09003 * 109.62489 * 248.52637 * 11 10 8 35 35 H 1.09004 * 109.62811 * 9.10245 * 11 10 8 36 36 H 1.08996 * 109.65228 * 294.07815 * 12 11 10 37 37 H 1.09002 * 109.44437 * 173.95768 * 12 11 10 38 38 H 1.09005 * 109.47332 * 171.60877 * 14 13 12 39 39 H 1.08998 * 109.47400 * 291.60557 * 14 13 12 40 40 H 0.96998 * 119.99281 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.49649 * 303.14286 * 23 13 12 42 42 H 1.09002 * 109.51624 * 183.07327 * 23 13 12 43 43 H 1.09001 * 109.63248 * 350.89622 * 24 10 8 44 44 H 1.08995 * 109.62968 * 111.48040 * 24 10 8 45 45 H 1.09008 * 109.16539 * 78.49159 * 25 5 4 46 46 H 1.08997 * 109.16804 * 197.69234 * 25 5 4 47 47 H 1.09002 * 109.46379 * 200.17602 * 26 25 5 48 48 H 1.09001 * 109.28144 * 80.31935 * 26 25 5 49 49 H 1.09000 * 109.59142 * 331.51735 * 27 26 25 50 50 H 1.08998 * 109.59028 * 211.07628 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0460 -0.7296 -1.2641 5 7 3.4849 -0.5698 -1.3631 6 6 3.9749 0.4804 -2.0514 7 8 3.2193 1.3159 -2.5026 8 6 5.4491 0.6189 -2.2538 9 8 6.1337 1.1340 -1.3944 10 7 6.0182 0.1719 -3.3907 11 6 5.1964 -0.3653 -4.4858 12 6 5.6007 0.3471 -5.7862 13 7 7.0514 0.2183 -5.9783 14 6 7.4559 0.7319 -7.2938 15 6 6.9023 2.1207 -7.4828 16 1 6.3802 2.6087 -6.6730 17 6 7.0624 2.7684 -8.6893 18 7 7.6979 2.1739 -9.6756 19 14 6.3768 4.4902 -8.9234 20 1 6.9999 5.4093 -7.9374 21 1 6.6801 4.9611 -10.2987 22 1 4.9060 4.4692 -8.7199 23 6 7.7931 0.8874 -4.9012 24 6 7.4782 0.2027 -3.5669 25 6 4.4317 -1.5164 -0.7439 26 6 3.9603 -1.9185 0.6654 27 6 3.3881 -0.7097 1.3777 28 8 1.9900 -0.6504 1.1270 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.5716 -0.3037 -2.1482 33 1 1.8022 -1.7897 -1.1963 34 1 5.3704 -1.4370 -4.5824 35 1 4.1426 -0.1800 -4.2776 36 1 5.3344 1.4022 -5.7242 37 1 5.0804 -0.1105 -6.6276 38 1 8.5439 0.7633 -7.3528 39 1 7.0686 0.0770 -8.0743 40 1 7.8102 2.6295 -10.5245 41 1 7.4962 1.9350 -4.8514 42 1 8.8627 0.8215 -5.1002 43 1 7.9337 0.7637 -2.7509 44 1 7.8673 -0.8154 -3.5770 45 1 4.5068 -2.4071 -1.3678 46 1 5.4126 -1.0465 -0.6728 47 1 4.8050 -2.3084 1.2334 48 1 3.1927 -2.6880 0.5822 49 1 3.8652 0.1956 1.0023 50 1 3.5635 -0.8002 2.4497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601448661.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -113.426963 kcal Electronic energy + Delta-G solvation = -31516.740552 eV Core-core repulsion = 27350.745299 eV Total energy + Delta-G solvation = -4165.995253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.41858 -40.87439 -39.66181 -38.98254 -36.81125 -36.21367 -34.66729 -34.39341 -32.31208 -31.48141 -30.19132 -28.75238 -27.51335 -26.92602 -25.27013 -24.69691 -23.73926 -22.68870 -22.42167 -21.42689 -19.93746 -19.23984 -18.44882 -18.19979 -17.99793 -17.63283 -17.19030 -16.82522 -16.64524 -16.15247 -16.03527 -15.91488 -15.65011 -15.38863 -15.21349 -14.86846 -14.78172 -14.44233 -13.94751 -13.90723 -13.86939 -13.60439 -13.37357 -13.08628 -13.02371 -12.98412 -12.84945 -12.69409 -12.63979 -12.47907 -12.28757 -12.27486 -12.14282 -12.08324 -11.84408 -11.65437 -11.60425 -10.79567 -10.71758 -10.65246 -10.03091 -9.90667 -9.14362 -8.21981 -6.40012 0.80093 0.90163 1.28279 1.32303 1.32847 1.41184 2.10458 2.32225 2.62830 2.88254 3.03859 3.21961 3.59390 3.72583 3.80639 3.94058 3.97449 4.02209 4.05448 4.14296 4.21976 4.26838 4.36215 4.39058 4.42724 4.51136 4.62136 4.63172 4.65169 4.72775 4.79744 4.80263 4.97510 4.98005 5.01810 5.05704 5.08175 5.10830 5.22082 5.25444 5.30182 5.34957 5.69046 5.75972 5.87616 5.98610 6.16052 6.37307 6.51347 6.53967 6.56871 6.79329 7.31386 8.80615 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.002841 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.674469 B = 9853.608411 C =10605.600226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 H 0.020 0.980 4 C 0.077 3.923 5 N -0.584 5.584 6 C 0.512 3.488 7 O -0.545 6.545 8 C 0.515 3.485 9 O -0.550 6.550 10 N -0.586 5.586 11 C 0.120 3.880 12 C 0.054 3.946 13 N -0.529 5.529 14 C 0.202 3.798 15 C -0.562 4.562 16 H 0.046 0.954 17 C 0.020 3.980 18 N -0.919 5.919 19 Si 0.947 3.053 20 H -0.276 1.276 21 H -0.276 1.276 22 H -0.273 1.273 23 C 0.047 3.953 24 C 0.125 3.875 25 C 0.091 3.909 26 C -0.151 4.151 27 C 0.066 3.934 28 O -0.391 6.391 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.013 0.987 37 H 0.083 0.917 38 H 0.011 0.989 39 H 0.017 0.983 40 H 0.267 0.733 41 H 0.007 0.993 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.074 0.926 47 H 0.115 0.885 48 H 0.097 0.903 49 H 0.027 0.973 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 -13.862 21.549 27.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.027 3.973 3 H 0.038 0.962 4 C -0.045 4.045 5 N -0.317 5.317 6 C 0.294 3.706 7 O -0.422 6.422 8 C 0.298 3.702 9 O -0.428 6.428 10 N -0.319 5.319 11 C -0.002 4.002 12 C -0.076 4.076 13 N -0.253 5.253 14 C 0.075 3.925 15 C -0.601 4.601 16 H 0.065 0.935 17 C -0.180 4.180 18 N -0.558 5.558 19 Si 0.773 3.227 20 H -0.202 1.202 21 H -0.201 1.201 22 H -0.198 1.198 23 C -0.082 4.082 24 C 0.003 3.997 25 C -0.029 4.029 26 C -0.189 4.189 27 C -0.010 4.010 28 O -0.310 6.310 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.032 0.968 37 H 0.102 0.898 38 H 0.029 0.971 39 H 0.035 0.965 40 H 0.076 0.924 41 H 0.026 0.974 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.092 0.908 47 H 0.133 0.867 48 H 0.115 0.885 49 H 0.046 0.954 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.370 -13.752 21.706 27.709 hybrid contribution 0.035 2.674 -1.065 2.878 sum -10.335 -11.078 20.642 25.605 Atomic orbital electron populations 1.21707 0.90261 1.04141 1.03195 1.21970 0.96687 0.93546 0.85112 0.96157 1.22703 0.78055 1.03835 0.99906 1.48063 1.08248 1.24573 1.50816 1.20371 0.88479 0.82602 0.79143 1.90809 1.58648 1.41303 1.51432 1.20326 0.88348 0.78674 0.82840 1.90763 1.63137 1.44490 1.44450 1.48324 1.08967 1.59412 1.15199 1.22156 0.94015 0.99908 0.84106 1.22289 0.90011 0.98080 0.97192 1.62467 1.04433 1.55257 1.03128 1.19436 0.94856 0.92212 0.85971 1.21930 1.37026 1.02868 0.98291 0.93535 1.25673 0.95220 1.01408 0.95749 1.70021 1.42382 1.39305 1.04133 0.85775 0.79001 0.80472 0.77458 1.20167 1.20087 1.19834 1.22335 0.99524 0.95045 0.91287 1.21944 0.77968 1.03288 0.96477 1.22483 0.91276 0.93228 0.95947 1.22462 1.03677 0.99036 0.93735 1.22368 0.80132 0.97040 1.01476 1.86251 1.24232 1.76715 1.43831 0.89967 0.91525 0.90274 0.89349 0.86178 0.86876 0.89841 0.96848 0.89842 0.97112 0.96463 0.92416 0.97439 0.89316 0.88837 0.87176 0.87851 0.90786 0.86695 0.88493 0.95425 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.55 71.98 0.69 -1.16 16 2 C 0.09 1.62 3.25 31.21 0.10 1.72 16 3 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 4 C 0.08 1.33 4.83 87.25 0.42 1.75 16 5 N -0.58 -11.95 2.18 -818.82 -1.79 -13.73 16 6 C 0.51 15.01 5.59 87.27 0.49 15.50 16 7 O -0.54 -19.75 16.33 -3.25 -0.05 -19.81 16 8 C 0.52 16.22 5.64 87.27 0.49 16.72 16 9 O -0.55 -19.82 16.09 -3.25 -0.05 -19.87 16 10 N -0.59 -17.21 3.00 -818.62 -2.46 -19.67 16 11 C 0.12 3.32 6.51 86.50 0.56 3.88 16 12 C 0.05 2.00 5.02 86.54 0.43 2.43 16 13 N -0.53 -21.24 4.83 -898.90 -4.34 -25.58 16 14 C 0.20 10.18 5.19 85.56 0.44 10.63 16 15 C -0.56 -31.16 7.81 25.60 0.20 -30.96 16 16 H 0.05 2.64 5.90 -2.91 -0.02 2.62 16 17 C 0.02 1.12 5.46 84.65 0.46 1.58 16 18 N -0.92 -53.86 13.29 21.45 0.28 -53.58 16 19 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 23 C 0.05 1.73 5.35 86.39 0.46 2.20 16 24 C 0.12 3.54 6.61 86.35 0.57 4.11 16 25 C 0.09 1.31 6.04 86.50 0.52 1.83 16 26 C -0.15 -1.54 5.79 30.43 0.18 -1.37 16 27 C 0.07 1.01 6.38 71.50 0.46 1.47 16 28 O -0.39 -7.06 9.47 -117.85 -1.12 -8.17 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.70 7.34 -2.39 -0.02 1.69 16 33 H 0.12 1.37 8.11 -2.39 -0.02 1.35 16 34 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.08 2.24 6.27 -2.38 -0.01 2.23 16 36 H 0.01 0.59 6.41 -2.39 -0.02 0.58 16 37 H 0.08 3.09 8.11 -2.39 -0.02 3.07 16 38 H 0.01 0.58 7.92 -2.38 -0.02 0.56 16 39 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.01 0.32 7.42 -2.39 -0.02 0.30 16 42 H 0.09 3.10 7.96 -2.39 -0.02 3.08 16 43 H 0.09 2.66 7.04 -2.39 -0.02 2.64 16 44 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.07 1.32 6.08 -2.39 -0.01 1.31 16 47 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.10 0.80 8.01 -2.39 -0.02 0.78 16 49 H 0.03 0.58 7.41 -2.39 -0.02 0.56 16 50 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -72.58 388.78 -0.08 -72.66 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.93 Total: 10.66 kcal Atomic # 6 Polarization: 23.84 SS G_CDS: 6.48 Total: 30.32 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -8.30 Total: -112.56 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.22 Total: -47.85 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -72.58 -0.08 -72.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601448661.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.767 kcal (2) G-P(sol) polarization free energy of solvation -72.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds