Wall clock time and date at job start Sat Apr 11 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46741 * 2 1 4 4 C 1.54802 * 109.46838 * 119.99297 * 2 1 3 5 5 N 1.45120 * 109.53119 * 187.89455 * 4 2 1 6 6 C 1.34777 * 118.75817 * 90.70935 * 5 4 2 7 7 O 1.21343 * 119.99954 * 5.01783 * 6 5 4 8 8 C 1.49448 * 120.00001 * 185.01802 * 6 5 4 9 9 O 1.21346 * 120.00227 * 85.42311 * 8 6 5 10 10 N 1.34775 * 119.99763 * 265.42414 * 8 6 5 11 11 C 1.47086 * 120.87920 * 174.96171 * 10 8 6 12 12 C 1.53239 * 108.52269 * 231.20671 * 11 10 8 13 13 N 1.46910 * 109.33962 * 306.17082 * 12 11 10 14 14 C 1.46900 * 110.99938 * 187.24991 * 13 12 11 15 15 C 1.50701 * 109.46888 * 170.00158 * 14 13 12 16 16 H 1.08005 * 119.99718 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99947 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99916 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99869 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47072 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47221 * 299.99374 * 19 17 15 22 22 H 1.48494 * 109.47296 * 59.99766 * 19 17 15 23 23 C 1.46898 * 111.26598 * 63.10348 * 13 12 11 24 24 C 1.47075 * 120.88422 * 354.98474 * 10 8 6 25 25 C 1.47511 * 122.48465 * 270.98555 * 5 4 2 26 26 C 1.53198 * 111.23651 * 41.23272 * 25 5 4 27 27 C 1.51537 * 109.43102 * 40.26517 * 26 25 5 28 28 O 1.38016 * 109.46785 * 240.00708 * 2 1 3 29 29 H 1.09001 * 109.46698 * 300.00817 * 1 2 3 30 30 H 1.08994 * 109.46990 * 60.00173 * 1 2 3 31 31 H 1.08995 * 109.46739 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.45844 * 67.87766 * 4 2 1 33 33 H 1.08995 * 109.45760 * 307.90754 * 4 2 1 34 34 H 1.08995 * 109.62928 * 111.49816 * 11 10 8 35 35 H 1.08992 * 109.63039 * 350.91553 * 11 10 8 36 36 H 1.08994 * 109.49808 * 186.21423 * 12 11 10 37 37 H 1.09000 * 109.51386 * 66.13768 * 12 11 10 38 38 H 1.09003 * 109.46922 * 49.99981 * 14 13 12 39 39 H 1.09001 * 109.47060 * 290.00140 * 14 13 12 40 40 H 0.97000 * 119.99924 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.50063 * 56.85488 * 23 13 12 42 42 H 1.09005 * 109.49328 * 176.93485 * 23 13 12 43 43 H 1.09003 * 109.62948 * 248.50347 * 24 10 8 44 44 H 1.08997 * 109.63130 * 9.08116 * 24 10 8 45 45 H 1.09003 * 109.16672 * 161.74826 * 25 5 4 46 46 H 1.08994 * 109.16843 * 280.95328 * 25 5 4 47 47 H 1.09004 * 109.61071 * 280.22569 * 26 25 5 48 48 H 1.09007 * 109.42939 * 160.18738 * 26 25 5 49 49 H 1.09000 * 109.59054 * 148.72249 * 27 26 25 50 50 H 1.08999 * 109.59057 * 28.28626 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7296 1.2641 5 7 3.4850 -0.5699 1.3631 6 6 3.9750 0.4801 2.0515 7 8 3.2207 1.2184 2.6501 8 6 5.4473 0.7351 2.0775 9 8 5.9686 1.3725 1.1862 10 7 6.1961 0.2571 3.0911 11 6 7.6599 0.4010 3.0812 12 6 8.2859 -0.9732 3.3418 13 7 7.7253 -1.5368 4.5773 14 6 8.4220 -2.7736 4.9552 15 6 7.9947 -3.1879 6.3397 16 1 7.2776 -2.5917 6.8845 17 6 8.5199 -4.3274 6.9112 18 7 9.3935 -5.0530 6.2479 19 14 7.9896 -4.8413 8.6270 20 1 8.6940 -6.0916 9.0091 21 1 8.3298 -3.7661 9.5931 22 1 6.5233 -5.0752 8.6427 23 6 6.2796 -1.7644 4.4511 24 6 5.5714 -0.4226 4.2360 25 6 4.4316 -1.5100 0.7338 26 6 3.9603 -1.9186 -0.6655 27 6 3.3880 -0.7097 -1.3777 28 8 1.9900 -0.6505 -1.1270 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8021 -1.7899 1.1963 33 1 1.5717 -0.3036 2.1481 34 1 7.9647 1.0964 3.8633 35 1 7.9848 0.7730 2.1096 36 1 9.3655 -0.8670 3.4477 37 1 8.0658 -1.6379 2.5064 38 1 9.4985 -2.6025 4.9431 39 1 8.1716 -3.5628 4.2462 40 1 9.7627 -5.8549 6.6498 41 1 6.0871 -2.4178 3.6001 42 1 5.9042 -2.2320 5.3614 43 1 5.6754 0.1937 5.1290 44 1 4.5155 -0.5951 4.0278 45 1 5.4098 -1.0352 0.6572 46 1 4.5154 -2.4023 1.3540 47 1 3.1927 -2.6882 -0.5827 48 1 4.8053 -2.3082 -1.2333 49 1 3.5634 -0.8001 -2.4497 50 1 3.8653 0.1955 -1.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601448662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:45 Heat of formation + Delta-G solvation = -90.770656 kcal Electronic energy + Delta-G solvation = -31660.394007 eV Core-core repulsion = 27495.381205 eV Total energy + Delta-G solvation = -4165.012802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.37915 -39.85659 -38.56533 -37.60074 -35.92849 -34.61148 -33.97656 -32.52737 -31.10978 -30.71904 -28.71689 -27.80917 -26.44287 -25.68031 -23.98859 -23.34952 -22.22341 -21.70344 -21.49134 -20.14171 -18.95525 -17.93537 -17.19893 -17.11244 -16.76973 -16.45674 -16.27566 -15.65762 -15.25774 -14.85287 -14.83943 -14.55499 -14.36885 -14.07885 -13.92351 -13.85489 -13.71827 -13.24268 -13.21402 -12.96686 -12.71463 -12.40501 -12.30938 -12.05569 -11.99725 -11.71817 -11.58734 -11.41195 -11.39455 -11.22475 -11.03770 -10.88492 -10.85725 -10.69483 -10.64770 -9.98294 -9.95861 -9.61547 -9.39238 -9.03146 -8.76398 -8.53583 -7.46724 -6.13445 -4.15963 1.94370 1.97393 2.45514 3.09552 3.26514 3.31578 3.32988 3.33913 3.94995 4.30582 4.32125 4.43832 4.62867 4.64715 4.74236 4.77439 4.90432 5.07046 5.11515 5.12200 5.19389 5.24633 5.26850 5.33303 5.35041 5.36864 5.43344 5.49559 5.60634 5.62236 5.64575 5.66486 5.72107 5.83083 5.84460 6.10381 6.12630 6.28114 6.28734 6.42995 6.70996 7.08137 7.13204 7.18004 7.30517 7.55436 7.64784 7.73319 7.89838 8.01179 8.37027 8.90805 9.49129 10.97190 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.002911 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.006170 B = 9615.926745 C =10061.374680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 H 0.052 0.948 4 C 0.076 3.924 5 N -0.595 5.595 6 C 0.514 3.486 7 O -0.511 6.511 8 C 0.514 3.486 9 O -0.524 6.524 10 N -0.588 5.588 11 C 0.116 3.884 12 C 0.042 3.958 13 N -0.535 5.535 14 C 0.195 3.805 15 C -0.513 4.513 16 H 0.064 0.936 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.288 1.288 21 H -0.275 1.275 22 H -0.277 1.277 23 C 0.053 3.947 24 C 0.108 3.892 25 C 0.100 3.900 26 C -0.163 4.163 27 C 0.073 3.927 28 O -0.386 6.386 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.028 0.972 38 H 0.033 0.967 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.025 0.975 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.188 6.799 -13.787 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 H 0.070 0.930 4 C -0.047 4.047 5 N -0.329 5.329 6 C 0.297 3.703 7 O -0.385 6.385 8 C 0.296 3.704 9 O -0.401 6.401 10 N -0.322 5.322 11 C -0.006 4.006 12 C -0.088 4.088 13 N -0.261 5.261 14 C 0.071 3.929 15 C -0.551 4.551 16 H 0.082 0.918 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.726 3.274 20 H -0.213 1.213 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.076 4.076 24 C -0.015 4.015 25 C -0.022 4.022 26 C -0.202 4.202 27 C -0.004 4.004 28 O -0.305 6.305 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.010 0.990 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.119 0.881 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.233 7.604 -13.651 20.476 hybrid contribution 0.057 -0.968 0.594 1.137 sum -13.176 6.636 -13.057 19.701 Atomic orbital electron populations 1.21714 0.91998 1.03129 1.02910 1.22001 0.95355 0.95075 0.84934 0.93000 1.22560 0.79261 1.02462 1.00385 1.47928 1.07208 1.25543 1.52270 1.20476 0.89482 0.81206 0.79147 1.90791 1.58637 1.46029 1.43066 1.20117 0.87006 0.80516 0.82727 1.90783 1.71858 1.39769 1.37671 1.48308 1.08107 1.55317 1.20484 1.21931 0.77136 0.98425 1.03085 1.22420 0.99915 0.93999 0.92427 1.62088 1.02077 1.32836 1.29059 1.19721 0.94114 0.83320 0.95769 1.21089 1.25555 1.08261 1.00243 0.91834 1.24981 0.95049 0.96370 0.98035 1.69940 1.29625 1.16224 1.37833 0.86553 0.78669 0.77868 0.84294 1.21330 1.20087 1.20238 1.22324 0.90095 0.93335 1.01851 1.22123 0.96088 0.94941 0.88339 1.22050 0.92060 0.93471 0.94598 1.22388 1.02727 0.99895 0.95145 1.22221 0.80693 0.97281 1.00172 1.86253 1.23566 1.76938 1.43719 0.90679 0.91483 0.91534 0.89107 0.88381 0.90153 0.89087 0.89561 0.95395 0.94905 0.99036 0.92743 0.95639 0.88098 0.89645 0.90672 0.89748 0.90212 0.89685 0.88955 0.88777 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.55 37.16 0.36 -0.69 16 2 C 0.09 0.85 3.25 -25.78 -0.08 0.76 16 3 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.08 0.76 4.91 -3.83 -0.02 0.74 16 5 N -0.59 -6.90 2.20 -173.21 -0.38 -7.28 16 6 C 0.51 7.47 5.44 -11.59 -0.06 7.41 16 7 O -0.51 -8.52 16.50 5.50 0.09 -8.43 16 8 C 0.51 7.96 5.39 -11.59 -0.06 7.90 16 9 O -0.52 -9.14 16.47 5.50 0.09 -9.05 16 10 N -0.59 -8.73 3.01 -172.97 -0.52 -9.25 16 11 C 0.12 1.67 6.58 -3.60 -0.02 1.64 16 12 C 0.04 0.67 5.62 -3.69 -0.02 0.65 16 13 N -0.54 -10.37 4.62 -235.75 -1.09 -11.46 16 14 C 0.20 4.69 4.72 -4.98 -0.02 4.67 16 15 C -0.51 -13.46 8.41 -34.44 -0.29 -13.75 16 16 H 0.06 1.64 7.13 -52.48 -0.37 1.26 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -25.49 13.29 55.43 0.74 -24.75 16 19 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 C 0.05 0.91 5.46 -3.70 -0.02 0.89 16 24 C 0.11 1.57 6.52 -3.60 -0.02 1.55 16 25 C 0.10 1.01 6.04 -3.39 -0.02 0.99 16 26 C -0.16 -1.33 5.78 -27.37 -0.16 -1.48 16 27 C 0.07 0.67 6.37 36.42 0.23 0.90 16 28 O -0.39 -3.96 9.47 -26.54 -0.25 -4.21 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 33 H 0.10 1.02 7.21 -51.93 -0.37 0.64 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.25 7.10 -51.93 -0.37 0.88 16 36 H 0.09 1.35 7.99 -51.93 -0.41 0.93 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 39 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 1.86 6.67 -51.93 -0.35 1.52 16 43 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.02 6.37 -51.93 -0.33 0.69 16 45 H 0.08 0.96 6.19 -51.93 -0.32 0.64 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.08 0.67 8.01 -51.93 -0.42 0.25 16 48 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.06 0.62 7.39 -51.93 -0.38 0.23 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -31.32 392.06 -9.13 -40.45 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.37 Total: -1.23 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -0.32 Total: 13.64 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -1.25 Total: -52.73 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.07 Total: -21.69 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.32 -9.13 -40.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601448662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.318 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds