Wall clock time and date at job start Sat Apr 11 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46741 * 2 1 4 4 C 1.54802 * 109.46838 * 119.99297 * 2 1 3 5 5 N 1.45120 * 109.53119 * 187.89455 * 4 2 1 6 6 C 1.34777 * 118.75817 * 90.70935 * 5 4 2 7 7 O 1.21343 * 119.99954 * 5.01783 * 6 5 4 8 8 C 1.49448 * 120.00001 * 185.01802 * 6 5 4 9 9 O 1.21346 * 120.00227 * 85.42311 * 8 6 5 10 10 N 1.34775 * 119.99763 * 265.42414 * 8 6 5 11 11 C 1.47086 * 120.87920 * 174.96171 * 10 8 6 12 12 C 1.53239 * 108.52269 * 231.20671 * 11 10 8 13 13 N 1.46910 * 109.33962 * 306.17082 * 12 11 10 14 14 C 1.46900 * 110.99938 * 187.24991 * 13 12 11 15 15 C 1.50701 * 109.46888 * 170.00158 * 14 13 12 16 16 H 1.08005 * 119.99718 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99947 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99916 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99869 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47072 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47221 * 299.99374 * 19 17 15 22 22 H 1.48494 * 109.47296 * 59.99766 * 19 17 15 23 23 C 1.46898 * 111.26598 * 63.10348 * 13 12 11 24 24 C 1.47075 * 120.88422 * 354.98474 * 10 8 6 25 25 C 1.47511 * 122.48465 * 270.98555 * 5 4 2 26 26 C 1.53198 * 111.23651 * 41.23272 * 25 5 4 27 27 C 1.51537 * 109.43102 * 40.26517 * 26 25 5 28 28 O 1.38016 * 109.46785 * 240.00708 * 2 1 3 29 29 H 1.09001 * 109.46698 * 300.00817 * 1 2 3 30 30 H 1.08994 * 109.46990 * 60.00173 * 1 2 3 31 31 H 1.08995 * 109.46739 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.45844 * 67.87766 * 4 2 1 33 33 H 1.08995 * 109.45760 * 307.90754 * 4 2 1 34 34 H 1.08995 * 109.62928 * 111.49816 * 11 10 8 35 35 H 1.08992 * 109.63039 * 350.91553 * 11 10 8 36 36 H 1.08994 * 109.49808 * 186.21423 * 12 11 10 37 37 H 1.09000 * 109.51386 * 66.13768 * 12 11 10 38 38 H 1.09003 * 109.46922 * 49.99981 * 14 13 12 39 39 H 1.09001 * 109.47060 * 290.00140 * 14 13 12 40 40 H 0.97000 * 119.99924 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.50063 * 56.85488 * 23 13 12 42 42 H 1.09005 * 109.49328 * 176.93485 * 23 13 12 43 43 H 1.09003 * 109.62948 * 248.50347 * 24 10 8 44 44 H 1.08997 * 109.63130 * 9.08116 * 24 10 8 45 45 H 1.09003 * 109.16672 * 161.74826 * 25 5 4 46 46 H 1.08994 * 109.16843 * 280.95328 * 25 5 4 47 47 H 1.09004 * 109.61071 * 280.22569 * 26 25 5 48 48 H 1.09007 * 109.42939 * 160.18738 * 26 25 5 49 49 H 1.09000 * 109.59054 * 148.72249 * 27 26 25 50 50 H 1.08999 * 109.59057 * 28.28626 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7296 1.2641 5 7 3.4850 -0.5699 1.3631 6 6 3.9750 0.4801 2.0515 7 8 3.2207 1.2184 2.6501 8 6 5.4473 0.7351 2.0775 9 8 5.9686 1.3725 1.1862 10 7 6.1961 0.2571 3.0911 11 6 7.6599 0.4010 3.0812 12 6 8.2859 -0.9732 3.3418 13 7 7.7253 -1.5368 4.5773 14 6 8.4220 -2.7736 4.9552 15 6 7.9947 -3.1879 6.3397 16 1 7.2776 -2.5917 6.8845 17 6 8.5199 -4.3274 6.9112 18 7 9.3935 -5.0530 6.2479 19 14 7.9896 -4.8413 8.6270 20 1 8.6940 -6.0916 9.0091 21 1 8.3298 -3.7661 9.5931 22 1 6.5233 -5.0752 8.6427 23 6 6.2796 -1.7644 4.4511 24 6 5.5714 -0.4226 4.2360 25 6 4.4316 -1.5100 0.7338 26 6 3.9603 -1.9186 -0.6655 27 6 3.3880 -0.7097 -1.3777 28 8 1.9900 -0.6505 -1.1270 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8021 -1.7899 1.1963 33 1 1.5717 -0.3036 2.1481 34 1 7.9647 1.0964 3.8633 35 1 7.9848 0.7730 2.1096 36 1 9.3655 -0.8670 3.4477 37 1 8.0658 -1.6379 2.5064 38 1 9.4985 -2.6025 4.9431 39 1 8.1716 -3.5628 4.2462 40 1 9.7627 -5.8549 6.6498 41 1 6.0871 -2.4178 3.6001 42 1 5.9042 -2.2320 5.3614 43 1 5.6754 0.1937 5.1290 44 1 4.5155 -0.5951 4.0278 45 1 5.4098 -1.0352 0.6572 46 1 4.5154 -2.4023 1.3540 47 1 3.1927 -2.6882 -0.5827 48 1 4.8053 -2.3082 -1.2333 49 1 3.5634 -0.8001 -2.4497 50 1 3.8653 0.1955 -1.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601448662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:44 Heat of formation + Delta-G solvation = -111.910946 kcal Electronic energy + Delta-G solvation = -31661.310719 eV Core-core repulsion = 27495.381205 eV Total energy + Delta-G solvation = -4165.929514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.46894 -40.89211 -39.68024 -38.96458 -36.86161 -36.14706 -34.72995 -34.43667 -32.39911 -31.52945 -30.24965 -28.85707 -27.61480 -26.94434 -25.17602 -24.71674 -23.60378 -22.73938 -22.45484 -21.39512 -20.02952 -19.10552 -18.49181 -18.29867 -18.05917 -17.67349 -17.16553 -16.72525 -16.65707 -16.34764 -16.04911 -15.83153 -15.57946 -15.40538 -15.34893 -14.87743 -14.81502 -14.42859 -14.07986 -14.00138 -13.95518 -13.59383 -13.39667 -13.08184 -13.00272 -12.95440 -12.77641 -12.69864 -12.62782 -12.45397 -12.36314 -12.34322 -12.20495 -12.14606 -11.79903 -11.63218 -11.31224 -10.83701 -10.74417 -10.59696 -10.06638 -9.94792 -9.08067 -8.19226 -6.28791 0.80493 0.81857 1.29114 1.44563 1.46417 1.54030 2.01925 2.41603 2.60812 2.82765 3.11853 3.18290 3.55051 3.66068 3.76538 3.88438 3.91417 3.98816 3.99592 4.09894 4.15739 4.17134 4.32476 4.35546 4.39244 4.41309 4.57080 4.59000 4.62445 4.68223 4.78971 4.79361 4.88460 4.94593 4.95922 4.96156 5.02883 5.08099 5.18092 5.19625 5.29624 5.32392 5.64382 5.71236 5.88622 6.04035 6.25247 6.46571 6.50585 6.54446 6.55415 6.86637 7.41215 8.91419 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.002911 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.006170 B = 9615.926745 C =10061.374680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.027 0.973 4 C 0.074 3.926 5 N -0.585 5.585 6 C 0.512 3.488 7 O -0.538 6.538 8 C 0.517 3.483 9 O -0.546 6.546 10 N -0.587 5.587 11 C 0.124 3.876 12 C 0.045 3.955 13 N -0.542 5.542 14 C 0.212 3.788 15 C -0.523 4.523 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.287 1.287 21 H -0.270 1.270 22 H -0.266 1.266 23 C 0.058 3.942 24 C 0.120 3.880 25 C 0.096 3.904 26 C -0.154 4.154 27 C 0.069 3.931 28 O -0.391 6.391 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.029 0.971 38 H 0.008 0.992 39 H -0.034 1.034 40 H 0.264 0.736 41 H 0.028 0.972 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.113 0.887 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.674 6.456 -13.883 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.028 3.972 3 H 0.045 0.955 4 C -0.048 4.048 5 N -0.318 5.318 6 C 0.295 3.705 7 O -0.415 6.415 8 C 0.300 3.700 9 O -0.424 6.424 10 N -0.321 5.321 11 C 0.002 3.998 12 C -0.084 4.084 13 N -0.267 5.267 14 C 0.086 3.914 15 C -0.562 4.562 16 H 0.085 0.915 17 C -0.193 4.193 18 N -0.574 5.574 19 Si 0.789 3.211 20 H -0.213 1.213 21 H -0.195 1.195 22 H -0.191 1.191 23 C -0.071 4.071 24 C -0.002 4.002 25 C -0.026 4.026 26 C -0.192 4.192 27 C -0.007 4.007 28 O -0.310 6.310 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.026 0.974 39 H -0.016 1.016 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.130 0.870 49 H 0.131 0.869 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.736 7.255 -13.768 21.432 hybrid contribution 0.538 -0.850 0.537 1.140 sum -14.198 6.405 -13.231 20.437 Atomic orbital electron populations 1.21713 0.90065 1.04061 1.03437 1.22015 0.96808 0.93621 0.84791 0.95543 1.22743 0.77988 1.03749 1.00360 1.48041 1.08261 1.24550 1.50935 1.20337 0.88787 0.81783 0.79599 1.90777 1.58874 1.47204 1.44655 1.20298 0.87494 0.79988 0.82256 1.90767 1.72469 1.40762 1.38405 1.48340 1.08296 1.55080 1.20361 1.21881 0.76839 0.97188 1.03891 1.22445 1.00243 0.94744 0.90952 1.61975 1.03177 1.30363 1.31184 1.19343 0.93029 0.84458 0.94610 1.21435 1.25298 1.08297 1.01131 0.91527 1.25835 0.95043 0.96485 1.01942 1.70065 1.30918 1.16754 1.39636 0.85509 0.78701 0.77372 0.79496 1.21280 1.19547 1.19063 1.22268 0.88730 0.94821 1.01272 1.21998 0.96377 0.93432 0.88419 1.22206 0.91218 0.93091 0.96040 1.22360 1.03634 0.99492 0.93730 1.22336 0.80185 0.96722 1.01427 1.86260 1.24079 1.76807 1.43859 0.89897 0.91279 0.90342 0.86965 0.88692 0.89437 0.88074 0.89237 0.95323 0.97395 1.01594 0.92741 0.95424 0.89447 0.89279 0.89280 0.91141 0.89309 0.88665 0.87049 0.86888 0.94912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.55 71.98 0.69 -1.10 16 2 C 0.09 1.63 3.25 31.21 0.10 1.73 16 3 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 4 C 0.07 1.35 4.91 87.25 0.43 1.78 16 5 N -0.58 -12.93 2.20 -820.28 -1.80 -14.73 16 6 C 0.51 14.59 5.44 87.27 0.47 15.07 16 7 O -0.54 -17.77 16.50 -3.23 -0.05 -17.82 16 8 C 0.52 15.66 5.39 87.27 0.47 16.13 16 9 O -0.55 -18.83 16.47 -3.23 -0.05 -18.88 16 10 N -0.59 -16.82 3.01 -819.53 -2.47 -19.28 16 11 C 0.12 3.42 6.58 86.35 0.57 3.98 16 12 C 0.05 1.43 5.62 86.38 0.49 1.92 16 13 N -0.54 -20.91 4.62 -899.78 -4.16 -25.07 16 14 C 0.21 10.36 4.72 85.56 0.40 10.76 16 15 C -0.52 -27.56 8.41 25.60 0.22 -27.35 16 16 H 0.07 3.40 7.13 -2.91 -0.02 3.38 16 17 C 0.01 0.29 5.46 84.65 0.46 0.75 16 18 N -0.93 -53.68 13.29 21.45 0.28 -53.40 16 19 Si 0.96 42.11 29.54 68.60 2.03 44.14 16 20 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 C 0.06 1.94 5.46 86.39 0.47 2.41 16 24 C 0.12 3.36 6.52 86.35 0.56 3.92 16 25 C 0.10 1.79 6.04 86.25 0.52 2.31 16 26 C -0.15 -2.16 5.78 30.18 0.17 -1.99 16 27 C 0.07 1.17 6.37 71.50 0.46 1.63 16 28 O -0.39 -7.40 9.47 -117.88 -1.12 -8.52 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 1.60 8.12 -2.38 -0.02 1.58 16 33 H 0.09 1.85 7.21 -2.39 -0.02 1.83 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.10 2.65 7.10 -2.39 -0.02 2.63 16 36 H 0.09 2.78 7.99 -2.39 -0.02 2.76 16 37 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.01 0.42 7.97 -2.39 -0.02 0.40 16 39 H -0.03 -1.79 8.12 -2.39 -0.02 -1.81 16 40 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 3.18 6.67 -2.38 -0.02 3.17 16 43 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.09 2.28 6.37 -2.39 -0.02 2.27 16 45 H 0.07 1.54 6.19 -2.39 -0.01 1.53 16 46 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.09 1.20 8.01 -2.38 -0.02 1.18 16 48 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.03 0.71 7.39 -2.39 -0.02 0.69 16 Total: -1.00 -67.36 392.06 0.07 -67.30 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.92 Total: 14.31 kcal Atomic # 6 Polarization: 25.48 SS G_CDS: 6.48 Total: 31.96 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -8.14 Total: -112.48 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -1.22 Total: -45.23 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -67.36 0.07 -67.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601448662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.614 kcal (2) G-P(sol) polarization free energy of solvation -67.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds