Wall clock time and date at job start Sat Apr 11 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.67680 * 2 1 4 4 C 1.54993 * 110.62110 * 237.02983 * 2 1 3 5 5 C 1.54804 * 102.09295 * 204.47893 * 4 2 1 6 6 C 1.54093 * 104.18978 * 20.88012 * 5 4 2 7 7 H 1.08999 * 109.88283 * 242.45346 * 6 5 4 8 8 C 1.53002 * 109.87753 * 121.45507 * 6 5 4 9 9 N 1.46503 * 109.47202 * 180.02562 * 8 6 5 10 10 C 1.34770 * 120.00095 * 180.02562 * 9 8 6 11 11 O 1.21351 * 120.00329 * 359.72179 * 10 9 8 12 12 C 1.49451 * 120.00115 * 180.02562 * 10 9 8 13 13 O 1.21347 * 119.99699 * 353.08179 * 12 10 9 14 14 N 1.34771 * 120.00195 * 173.08161 * 12 10 9 15 15 C 1.47081 * 120.88351 * 181.22123 * 14 12 10 16 16 C 1.53693 * 108.27721 * 128.75258 * 15 14 12 17 17 N 1.46897 * 109.25957 * 54.08709 * 16 15 14 18 18 C 1.46900 * 111.00092 * 172.60805 * 17 16 15 19 19 C 1.50693 * 109.47360 * 59.76625 * 18 17 16 20 20 H 1.08007 * 119.99881 * 355.26016 * 19 18 17 21 21 C 1.37878 * 120.00294 * 175.26308 * 19 18 17 22 22 N 1.31515 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00196 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46936 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47197 * 119.99727 * 23 21 19 26 26 H 1.48501 * 109.46868 * 239.99329 * 23 21 19 27 27 C 1.46903 * 111.26380 * 296.75410 * 17 16 15 28 28 C 1.47077 * 120.88427 * 1.49598 * 14 12 10 29 29 O 1.43741 * 107.29424 * 2.03351 * 6 5 4 30 30 H 1.09003 * 109.47262 * 182.96252 * 1 2 3 31 31 H 1.08994 * 109.47416 * 302.96882 * 1 2 3 32 32 H 1.09007 * 109.46830 * 62.96965 * 1 2 3 33 33 H 1.08998 * 110.90738 * 86.27667 * 4 2 1 34 34 H 1.09001 * 110.91064 * 322.67916 * 4 2 1 35 35 H 1.09004 * 110.48573 * 262.20423 * 5 4 2 36 36 H 1.09003 * 110.60175 * 139.62086 * 5 4 2 37 37 H 1.09003 * 109.47264 * 60.00304 * 8 6 5 38 38 H 1.08997 * 109.47298 * 299.99817 * 8 6 5 39 39 H 0.96996 * 119.99892 * 359.97438 * 9 8 6 40 40 H 1.08997 * 109.62853 * 248.52000 * 15 14 12 41 41 H 1.09005 * 109.62869 * 9.09904 * 15 14 12 42 42 H 1.09003 * 109.65068 * 294.07531 * 16 15 14 43 43 H 1.09010 * 109.44075 * 173.96046 * 16 15 14 44 44 H 1.08997 * 109.46560 * 179.76862 * 18 17 16 45 45 H 1.08995 * 109.46916 * 299.76246 * 18 17 16 46 46 H 0.96995 * 120.00302 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.49324 * 303.14326 * 27 17 16 48 48 H 1.09000 * 109.48825 * 183.06192 * 27 17 16 49 49 H 1.09003 * 109.62632 * 350.89992 * 28 14 12 50 50 H 1.08999 * 109.62960 * 111.47538 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0197 0.0000 4 6 2.0759 -0.7894 -1.2170 5 6 3.4795 -1.2168 -0.7233 6 6 3.3839 -1.1254 0.8120 7 1 4.0872 -0.3801 1.1835 8 6 3.6934 -2.4883 1.4345 9 7 3.5995 -2.3915 2.8933 10 6 3.8337 -3.4769 3.6572 11 8 4.1174 -4.5356 3.1364 12 6 3.7373 -3.3783 5.1453 13 8 3.5726 -2.2977 5.6723 14 7 3.8332 -4.4894 5.9019 15 6 3.7144 -4.4183 7.3662 16 6 2.6709 -5.4531 7.8160 17 7 3.0382 -6.7733 7.2867 18 6 2.1674 -7.8214 7.8354 19 6 0.7358 -7.5291 7.4665 20 1 0.4875 -6.6140 6.9494 21 6 -0.2570 -8.4298 7.7892 22 7 0.0455 -9.5443 8.4185 23 14 -2.0315 -8.0678 7.3314 24 1 -2.1055 -6.7588 6.6341 25 1 -2.5391 -9.1366 6.4341 26 1 -2.8604 -8.0200 8.5626 27 6 3.0139 -6.7840 5.8179 28 6 4.0654 -5.8046 5.2858 29 8 2.0384 -0.7353 1.1339 30 1 -0.3634 -1.0263 0.0531 31 1 -0.3634 0.5592 0.8621 32 1 -0.3633 0.4671 -0.9155 33 1 2.1510 -0.1478 -2.0949 34 1 1.4550 -1.6607 -1.4258 35 1 4.2407 -0.5332 -1.0995 36 1 3.6998 -2.2388 -1.0318 37 1 4.7012 -2.7952 1.1546 38 1 2.9757 -3.2245 1.0727 39 1 3.3694 -1.5461 3.3095 40 1 4.6781 -4.6433 7.8231 41 1 3.3914 -3.4193 7.6593 42 1 1.6881 -5.1705 7.4386 43 1 2.6448 -5.4923 8.9051 44 1 2.4586 -8.7878 7.4239 45 1 2.2656 -7.8441 8.9206 46 1 -0.6528 -10.1781 8.6453 47 1 2.0264 -6.4829 5.4683 48 1 3.2371 -7.7883 5.4579 49 1 3.9746 -5.7227 4.2027 50 1 5.0623 -6.1602 5.5465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602277919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:32 Heat of formation + Delta-G solvation = -91.265665 kcal Electronic energy + Delta-G solvation = -30213.079607 eV Core-core repulsion = 26048.045340 eV Total energy + Delta-G solvation = -4165.034267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.88072 -40.06468 -38.62951 -37.52210 -35.51551 -34.23925 -32.72573 -32.31190 -32.14420 -30.61880 -28.73448 -28.15617 -25.80583 -24.81288 -23.55321 -22.87937 -21.91819 -21.70597 -21.62317 -20.47371 -19.26824 -17.60503 -17.29360 -16.81388 -16.51664 -16.30498 -15.83851 -15.70997 -15.45528 -14.78063 -14.56164 -14.45623 -14.35287 -14.24761 -14.01688 -13.55943 -13.47186 -13.34359 -13.00990 -12.73982 -12.59169 -12.40638 -12.35508 -12.12254 -11.82220 -11.67822 -11.38888 -11.32836 -11.14711 -11.12270 -10.99715 -10.79230 -10.65089 -10.54607 -10.23921 -10.10754 -9.90387 -9.64825 -9.44120 -8.90516 -8.48957 -8.44185 -7.22004 -6.04318 -4.13505 1.48506 2.34670 3.23668 3.26037 3.29010 3.34282 3.38665 3.60224 4.01989 4.16676 4.37530 4.40076 4.40088 4.45299 4.70404 4.82200 4.93030 5.02171 5.03649 5.09862 5.25866 5.26234 5.29164 5.40228 5.45669 5.50021 5.58038 5.58911 5.64385 5.69383 5.77911 5.84947 5.88133 5.99228 6.07915 6.40109 6.48719 6.56688 6.64065 6.66534 6.78352 7.01526 7.24094 7.46195 7.50672 7.79143 7.88015 8.00083 8.07864 8.22646 8.27435 8.96722 9.53811 11.00776 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.002618 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.668517 B =10694.176610 C =12050.430831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.071 0.929 4 C -0.151 4.151 5 C -0.149 4.149 6 C 0.064 3.936 7 H 0.078 0.922 8 C 0.120 3.880 9 N -0.695 5.695 10 C 0.512 3.488 11 O -0.509 6.509 12 C 0.503 3.497 13 O -0.536 6.536 14 N -0.567 5.567 15 C 0.110 3.890 16 C 0.051 3.949 17 N -0.542 5.542 18 C 0.187 3.813 19 C -0.550 4.550 20 H 0.056 0.944 21 C 0.065 3.935 22 N -0.890 5.890 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.051 3.949 28 C 0.057 3.943 29 O -0.366 6.366 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.416 0.584 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.030 0.970 46 H 0.262 0.738 47 H 0.040 0.960 48 H 0.079 0.921 49 H 0.148 0.852 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 18.983 -19.006 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.089 0.911 4 C -0.189 4.189 5 C -0.187 4.187 6 C 0.006 3.994 7 H 0.096 0.904 8 C -0.003 4.003 9 N -0.348 5.348 10 C 0.295 3.705 11 O -0.386 6.386 12 C 0.285 3.715 13 O -0.415 6.415 14 N -0.299 5.299 15 C -0.012 4.012 16 C -0.079 4.079 17 N -0.267 5.267 18 C 0.061 3.939 19 C -0.589 4.589 20 H 0.074 0.926 21 C -0.137 4.137 22 N -0.529 5.529 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.078 4.078 28 C -0.064 4.064 29 O -0.285 6.285 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.253 0.747 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.097 0.903 49 H 0.164 0.836 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.498 18.463 -18.670 27.599 hybrid contribution -1.952 0.540 -0.328 2.052 sum 6.546 19.003 -18.998 27.657 Atomic orbital electron populations 1.21784 0.92932 1.03328 1.02504 1.23158 0.95461 0.95208 0.84748 0.91131 1.23198 0.96031 1.01092 0.98567 1.22911 0.98223 1.03599 0.93953 1.22982 0.85830 0.95654 0.94947 0.90406 1.21733 1.02742 0.96732 0.79140 1.45665 1.69057 1.13343 1.06768 1.20335 0.77692 0.84023 0.88488 1.90375 1.47401 1.26633 1.74238 1.19848 0.79347 0.84836 0.87473 1.90723 1.49752 1.27124 1.73867 1.48130 1.66517 1.07557 1.07721 1.22127 1.00539 1.00649 0.77868 1.22323 0.95847 0.89550 1.00160 1.62528 1.53929 1.04413 1.05801 1.19771 0.89015 0.89594 0.95487 1.21784 0.93509 1.05298 1.38308 0.92566 1.24956 0.99001 0.94910 0.94859 1.69947 1.33161 1.09584 1.40174 0.86599 0.85187 0.78338 0.78282 1.19888 1.20893 1.20893 1.22248 0.97084 0.98672 0.89774 1.23447 0.99511 0.80378 1.03111 1.88973 1.26978 1.73484 1.39097 0.91543 0.91681 0.91088 0.90050 0.90109 0.90070 0.89702 0.89577 0.90087 0.74695 0.90676 0.89299 0.93815 0.90162 0.94620 0.95240 0.92836 0.94163 0.90291 0.83618 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.66 37.16 0.36 -0.61 16 2 C 0.07 0.49 3.98 -25.68 -0.10 0.39 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.15 -0.80 6.59 -24.73 -0.16 -0.96 16 5 C -0.15 -0.76 6.64 -25.21 -0.17 -0.92 16 6 C 0.06 0.46 3.49 -26.16 -0.09 0.37 16 7 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 8 C 0.12 1.07 5.15 -4.04 -0.02 1.05 16 9 N -0.70 -8.03 5.47 -60.73 -0.33 -8.36 16 10 C 0.51 7.42 7.81 -11.59 -0.09 7.33 16 11 O -0.51 -7.95 13.04 5.50 0.07 -7.88 16 12 C 0.50 8.28 7.77 -11.59 -0.09 8.19 16 13 O -0.54 -9.50 15.95 5.50 0.09 -9.41 16 14 N -0.57 -9.63 3.00 -172.69 -0.52 -10.15 16 15 C 0.11 1.84 6.62 -3.36 -0.02 1.82 16 16 C 0.05 1.00 5.18 -3.47 -0.02 0.98 16 17 N -0.54 -11.65 4.83 -235.47 -1.14 -12.79 16 18 C 0.19 4.79 5.11 -4.98 -0.03 4.77 16 19 C -0.55 -15.20 7.76 -34.44 -0.27 -15.46 16 20 H 0.06 1.57 5.88 -52.48 -0.31 1.26 16 21 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 22 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 23 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 C 0.05 1.03 5.24 -3.70 -0.02 1.01 16 28 C 0.06 0.95 6.35 -3.60 -0.02 0.93 16 29 O -0.37 -3.48 10.75 -35.23 -0.38 -3.85 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.40 7.70 -51.93 -0.40 0.00 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.42 4.67 7.91 -40.82 -0.32 4.35 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 1.44 7.07 -51.93 -0.37 1.07 16 42 H 0.04 0.96 6.64 -51.93 -0.34 0.62 16 43 H 0.08 1.54 8.11 -51.92 -0.42 1.12 16 44 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.04 0.89 7.09 -51.93 -0.37 0.52 16 48 H 0.08 1.55 8.06 -51.93 -0.42 1.14 16 49 H 0.15 2.44 3.92 -56.52 -0.22 2.21 16 50 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -32.12 394.48 -9.60 -41.72 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.22 Total: 2.92 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -0.84 Total: 10.64 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -1.25 Total: -56.78 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.22 Total: -21.14 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.12 -9.60 -41.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602277919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.545 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds