Wall clock time and date at job start Sat Apr 11 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.67680 * 2 1 4 4 C 1.54993 * 110.62110 * 237.02983 * 2 1 3 5 5 C 1.54804 * 102.09295 * 204.47893 * 4 2 1 6 6 C 1.54093 * 104.18978 * 20.88012 * 5 4 2 7 7 H 1.08999 * 109.88283 * 242.45346 * 6 5 4 8 8 C 1.53002 * 109.87753 * 121.45507 * 6 5 4 9 9 N 1.46503 * 109.47202 * 180.02562 * 8 6 5 10 10 C 1.34770 * 120.00095 * 180.02562 * 9 8 6 11 11 O 1.21351 * 120.00329 * 359.72179 * 10 9 8 12 12 C 1.49451 * 120.00115 * 180.02562 * 10 9 8 13 13 O 1.21347 * 119.99699 * 353.08179 * 12 10 9 14 14 N 1.34771 * 120.00195 * 173.08161 * 12 10 9 15 15 C 1.47081 * 120.88351 * 181.22123 * 14 12 10 16 16 C 1.53693 * 108.27721 * 128.75258 * 15 14 12 17 17 N 1.46897 * 109.25957 * 54.08709 * 16 15 14 18 18 C 1.46900 * 111.00092 * 172.60805 * 17 16 15 19 19 C 1.50693 * 109.47360 * 59.76625 * 18 17 16 20 20 H 1.08007 * 119.99881 * 355.26016 * 19 18 17 21 21 C 1.37878 * 120.00294 * 175.26308 * 19 18 17 22 22 N 1.31515 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00196 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46936 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47197 * 119.99727 * 23 21 19 26 26 H 1.48501 * 109.46868 * 239.99329 * 23 21 19 27 27 C 1.46903 * 111.26380 * 296.75410 * 17 16 15 28 28 C 1.47077 * 120.88427 * 1.49598 * 14 12 10 29 29 O 1.43741 * 107.29424 * 2.03351 * 6 5 4 30 30 H 1.09003 * 109.47262 * 182.96252 * 1 2 3 31 31 H 1.08994 * 109.47416 * 302.96882 * 1 2 3 32 32 H 1.09007 * 109.46830 * 62.96965 * 1 2 3 33 33 H 1.08998 * 110.90738 * 86.27667 * 4 2 1 34 34 H 1.09001 * 110.91064 * 322.67916 * 4 2 1 35 35 H 1.09004 * 110.48573 * 262.20423 * 5 4 2 36 36 H 1.09003 * 110.60175 * 139.62086 * 5 4 2 37 37 H 1.09003 * 109.47264 * 60.00304 * 8 6 5 38 38 H 1.08997 * 109.47298 * 299.99817 * 8 6 5 39 39 H 0.96996 * 119.99892 * 359.97438 * 9 8 6 40 40 H 1.08997 * 109.62853 * 248.52000 * 15 14 12 41 41 H 1.09005 * 109.62869 * 9.09904 * 15 14 12 42 42 H 1.09003 * 109.65068 * 294.07531 * 16 15 14 43 43 H 1.09010 * 109.44075 * 173.96046 * 16 15 14 44 44 H 1.08997 * 109.46560 * 179.76862 * 18 17 16 45 45 H 1.08995 * 109.46916 * 299.76246 * 18 17 16 46 46 H 0.96995 * 120.00302 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.49324 * 303.14326 * 27 17 16 48 48 H 1.09000 * 109.48825 * 183.06192 * 27 17 16 49 49 H 1.09003 * 109.62632 * 350.89992 * 28 14 12 50 50 H 1.08999 * 109.62960 * 111.47538 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0197 0.0000 4 6 2.0759 -0.7894 -1.2170 5 6 3.4795 -1.2168 -0.7233 6 6 3.3839 -1.1254 0.8120 7 1 4.0872 -0.3801 1.1835 8 6 3.6934 -2.4883 1.4345 9 7 3.5995 -2.3915 2.8933 10 6 3.8337 -3.4769 3.6572 11 8 4.1174 -4.5356 3.1364 12 6 3.7373 -3.3783 5.1453 13 8 3.5726 -2.2977 5.6723 14 7 3.8332 -4.4894 5.9019 15 6 3.7144 -4.4183 7.3662 16 6 2.6709 -5.4531 7.8160 17 7 3.0382 -6.7733 7.2867 18 6 2.1674 -7.8214 7.8354 19 6 0.7358 -7.5291 7.4665 20 1 0.4875 -6.6140 6.9494 21 6 -0.2570 -8.4298 7.7892 22 7 0.0455 -9.5443 8.4185 23 14 -2.0315 -8.0678 7.3314 24 1 -2.1055 -6.7588 6.6341 25 1 -2.5391 -9.1366 6.4341 26 1 -2.8604 -8.0200 8.5626 27 6 3.0139 -6.7840 5.8179 28 6 4.0654 -5.8046 5.2858 29 8 2.0384 -0.7353 1.1339 30 1 -0.3634 -1.0263 0.0531 31 1 -0.3634 0.5592 0.8621 32 1 -0.3633 0.4671 -0.9155 33 1 2.1510 -0.1478 -2.0949 34 1 1.4550 -1.6607 -1.4258 35 1 4.2407 -0.5332 -1.0995 36 1 3.6998 -2.2388 -1.0318 37 1 4.7012 -2.7952 1.1546 38 1 2.9757 -3.2245 1.0727 39 1 3.3694 -1.5461 3.3095 40 1 4.6781 -4.6433 7.8231 41 1 3.3914 -3.4193 7.6593 42 1 1.6881 -5.1705 7.4386 43 1 2.6448 -5.4923 8.9051 44 1 2.4586 -8.7878 7.4239 45 1 2.2656 -7.8441 8.9206 46 1 -0.6528 -10.1781 8.6453 47 1 2.0264 -6.4829 5.4683 48 1 3.2371 -7.7883 5.4579 49 1 3.9746 -5.7227 4.2027 50 1 5.0623 -6.1602 5.5465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602277919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:31 Heat of formation + Delta-G solvation = -115.335396 kcal Electronic energy + Delta-G solvation = -30214.123349 eV Core-core repulsion = 26048.045340 eV Total energy + Delta-G solvation = -4166.078009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.07990 -40.72699 -39.87731 -39.03272 -36.66660 -35.70895 -34.31267 -33.23648 -32.80210 -32.12112 -30.15119 -29.23800 -27.47043 -26.01058 -24.73435 -24.37429 -23.38514 -22.36559 -22.21223 -21.74023 -20.67316 -18.97140 -18.38896 -18.17619 -17.69430 -17.33876 -16.95432 -16.74676 -16.63663 -16.40121 -16.03763 -15.75951 -15.54081 -15.37346 -15.09478 -14.94717 -14.69761 -14.39582 -14.01567 -13.90982 -13.69141 -13.58478 -13.22269 -13.08888 -12.96994 -12.93649 -12.78421 -12.59819 -12.51898 -12.46814 -12.22214 -12.12678 -11.89836 -11.82727 -11.76970 -11.67154 -11.56843 -10.66985 -10.64928 -10.41789 -10.18955 -9.91049 -9.09281 -8.19761 -6.38786 0.26128 1.20641 1.31754 1.33620 1.44818 2.05108 2.33530 2.35318 2.77422 3.05308 3.21643 3.31541 3.52975 3.67901 3.92876 3.97068 4.00199 4.07296 4.16669 4.28438 4.31336 4.33846 4.45939 4.50326 4.52668 4.55192 4.59301 4.70596 4.75490 4.83996 4.88687 4.95619 5.00184 5.05018 5.10853 5.12852 5.15324 5.21592 5.25729 5.27290 5.29761 5.39948 5.69941 5.89307 5.98025 5.99374 6.12295 6.23628 6.41962 6.61409 6.80921 6.85427 7.32634 8.83010 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.002618 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.668517 B =10694.176610 C =12050.430831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 H 0.082 0.918 4 C -0.148 4.148 5 C -0.144 4.144 6 C 0.064 3.936 7 H 0.090 0.910 8 C 0.117 3.883 9 N -0.681 5.681 10 C 0.513 3.487 11 O -0.523 6.523 12 C 0.501 3.499 13 O -0.549 6.549 14 N -0.576 5.576 15 C 0.120 3.880 16 C 0.053 3.947 17 N -0.537 5.537 18 C 0.200 3.800 19 C -0.558 4.558 20 H 0.049 0.951 21 C 0.015 3.985 22 N -0.922 5.922 23 Si 0.954 3.046 24 H -0.275 1.275 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.054 3.946 28 C 0.072 3.928 29 O -0.397 6.397 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.419 0.581 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.016 0.984 43 H 0.083 0.917 44 H 0.013 0.987 45 H 0.010 0.990 46 H 0.266 0.734 47 H 0.013 0.987 48 H 0.078 0.922 49 H 0.155 0.845 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 20.704 -20.852 30.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.007 3.993 3 H 0.100 0.900 4 C -0.185 4.185 5 C -0.182 4.182 6 C 0.006 3.994 7 H 0.108 0.892 8 C -0.006 4.006 9 N -0.333 5.333 10 C 0.294 3.706 11 O -0.402 6.402 12 C 0.284 3.716 13 O -0.429 6.429 14 N -0.308 5.308 15 C -0.002 4.002 16 C -0.076 4.076 17 N -0.261 5.261 18 C 0.073 3.927 19 C -0.597 4.597 20 H 0.067 0.933 21 C -0.185 4.185 22 N -0.562 5.562 23 Si 0.779 3.221 24 H -0.199 1.199 25 H -0.201 1.201 26 H -0.200 1.200 27 C -0.075 4.075 28 C -0.049 4.049 29 O -0.317 6.317 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.256 0.744 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.035 0.965 43 H 0.101 0.899 44 H 0.031 0.969 45 H 0.028 0.972 46 H 0.075 0.925 47 H 0.031 0.969 48 H 0.096 0.904 49 H 0.171 0.829 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.074 20.221 -20.541 30.219 hybrid contribution -2.131 0.061 0.232 2.145 sum 6.943 20.282 -20.310 29.531 Atomic orbital electron populations 1.21808 0.93186 1.02425 1.03148 1.23354 0.95416 0.95804 0.84748 0.89994 1.23192 0.95838 1.00928 0.98584 1.22934 0.98662 1.04500 0.92126 1.23085 0.85260 0.94655 0.96368 0.89220 1.21976 1.03395 0.97903 0.77279 1.45716 1.67272 1.12488 1.07841 1.19989 0.78315 0.84620 0.87656 1.90348 1.48665 1.27167 1.74005 1.20218 0.78537 0.84356 0.88461 1.90711 1.50192 1.27523 1.74429 1.48207 1.66857 1.07819 1.07869 1.22028 1.00326 0.99722 0.78109 1.22330 0.95693 0.89277 1.00287 1.62477 1.52404 1.04414 1.06789 1.19448 0.89041 0.89983 0.94211 1.21963 0.94650 1.04997 1.38066 0.93324 1.25749 1.03189 0.94732 0.94781 1.70047 1.34627 1.10427 1.41050 0.85574 0.80164 0.78107 0.78229 1.19922 1.20070 1.20033 1.22269 0.96928 0.99727 0.88586 1.23348 0.98834 0.79468 1.03263 1.88943 1.28128 1.74029 1.40649 0.92991 0.92635 0.89050 0.88023 0.90923 0.88019 0.89278 0.87937 0.91172 0.74417 0.88664 0.88536 0.96532 0.89900 0.96920 0.97197 0.92471 0.96853 0.90388 0.82920 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.66 71.98 0.69 -1.13 16 2 C 0.06 0.77 3.98 31.28 0.12 0.90 16 3 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.15 -1.23 6.59 31.89 0.21 -1.02 16 5 C -0.14 -1.09 6.64 31.58 0.21 -0.88 16 6 C 0.06 0.80 3.49 30.96 0.11 0.91 16 7 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 8 C 0.12 1.91 5.15 86.38 0.44 2.35 16 9 N -0.68 -14.88 5.47 -464.41 -2.54 -17.42 16 10 C 0.51 14.28 7.81 87.27 0.68 14.96 16 11 O -0.52 -15.68 13.04 -3.25 -0.04 -15.73 16 12 C 0.50 15.98 7.77 87.27 0.68 16.65 16 13 O -0.55 -18.85 15.95 -3.24 -0.05 -18.90 16 14 N -0.58 -18.96 3.00 -818.64 -2.46 -21.42 16 15 C 0.12 3.88 6.62 86.50 0.57 4.46 16 16 C 0.05 2.12 5.18 86.54 0.45 2.56 16 17 N -0.54 -23.40 4.83 -898.89 -4.34 -27.74 16 18 C 0.20 10.58 5.11 85.55 0.44 11.01 16 19 C -0.56 -31.54 7.76 25.60 0.20 -31.34 16 20 H 0.05 2.79 5.88 -2.91 -0.02 2.77 16 21 C 0.02 0.87 5.46 84.65 0.46 1.34 16 22 N -0.92 -55.04 13.29 21.45 0.28 -54.75 16 23 Si 0.95 44.95 29.54 68.60 2.03 46.97 16 24 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 27 C 0.05 2.18 5.24 86.38 0.45 2.63 16 28 C 0.07 2.35 6.35 86.35 0.55 2.90 16 29 O -0.40 -7.13 10.75 -148.98 -1.60 -8.73 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.07 0.72 8.06 -2.39 -0.02 0.71 16 35 H 0.10 0.38 8.14 -2.38 -0.02 0.37 16 36 H 0.09 0.61 7.70 -2.39 -0.02 0.60 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.42 8.90 7.91 -92.71 -0.73 8.17 16 40 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.10 3.01 7.07 -2.38 -0.02 2.99 16 42 H 0.02 0.74 6.64 -2.39 -0.02 0.73 16 43 H 0.08 3.20 8.11 -2.38 -0.02 3.18 16 44 H 0.01 0.72 8.07 -2.39 -0.02 0.70 16 45 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 47 H 0.01 0.60 7.09 -2.39 -0.02 0.58 16 48 H 0.08 3.12 8.06 -2.39 -0.02 3.10 16 49 H 0.15 4.95 3.92 -75.10 -0.29 4.65 16 50 H 0.08 2.54 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -69.32 394.48 -2.52 -71.85 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.07 Total: 19.57 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 6.27 Total: 26.30 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -9.05 Total: -121.33 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -1.70 Total: -43.36 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -69.32 -2.52 -71.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602277919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.490 kcal (2) G-P(sol) polarization free energy of solvation -69.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds