Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.82845 * 2 1 4 4 C 1.54386 * 109.83544 * 239.11566 * 2 1 3 5 5 C 1.55298 * 102.25527 * 219.04169 * 4 2 1 6 6 C 1.54950 * 100.94365 * 34.12930 * 5 4 2 7 7 H 1.08995 * 110.30888 * 82.56975 * 6 5 4 8 8 C 1.53003 * 110.31101 * 204.64316 * 6 5 4 9 9 N 1.46499 * 109.47046 * 185.00352 * 8 6 5 10 10 C 1.34779 * 119.99611 * 180.02562 * 9 8 6 11 11 O 1.21348 * 120.00269 * 359.97438 * 10 9 8 12 12 C 1.49461 * 119.99372 * 179.97438 * 10 9 8 13 13 O 1.21342 * 120.00242 * 6.48485 * 12 10 9 14 14 N 1.34780 * 119.99423 * 186.48067 * 12 10 9 15 15 C 1.47073 * 120.87839 * 178.47252 * 14 12 10 16 16 C 1.53234 * 108.52368 * 231.20645 * 15 14 12 17 17 N 1.46892 * 109.34060 * 306.17175 * 16 15 14 18 18 C 1.46900 * 111.00274 * 187.24847 * 17 16 15 19 19 C 1.50696 * 109.47433 * 170.00003 * 18 17 16 20 20 H 1.07999 * 119.99969 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00155 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99712 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99973 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46999 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47213 * 300.00198 * 23 21 19 26 26 H 1.48498 * 109.47221 * 60.00043 * 23 21 19 27 27 C 1.46899 * 111.26817 * 63.10353 * 17 16 15 28 28 C 1.47080 * 120.88377 * 358.49696 * 14 12 10 29 29 O 1.43234 * 109.90546 * 120.93435 * 2 1 3 30 30 H 1.08995 * 109.47175 * 180.88046 * 1 2 3 31 31 H 1.08993 * 109.47598 * 300.88741 * 1 2 3 32 32 H 1.09011 * 109.47201 * 60.88573 * 1 2 3 33 33 H 1.08996 * 110.84958 * 100.84691 * 4 2 1 34 34 H 1.09007 * 110.84401 * 337.22901 * 4 2 1 35 35 H 1.09005 * 111.12290 * 276.21317 * 5 4 2 36 36 H 1.08995 * 111.16649 * 152.06659 * 5 4 2 37 37 H 1.09001 * 109.47113 * 64.99806 * 8 6 5 38 38 H 1.08999 * 109.46641 * 304.99912 * 8 6 5 39 39 H 0.96998 * 120.00070 * 359.97438 * 9 8 6 40 40 H 1.08999 * 109.62853 * 111.50007 * 15 14 12 41 41 H 1.09006 * 109.63043 * 350.91886 * 15 14 12 42 42 H 1.09001 * 109.49782 * 186.21078 * 16 15 14 43 43 H 1.09009 * 109.49181 * 66.13349 * 16 15 14 44 44 H 1.09002 * 109.46936 * 50.00004 * 18 17 16 45 45 H 1.09000 * 109.47194 * 290.00350 * 18 17 16 46 46 H 0.96995 * 119.99387 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.49682 * 56.85893 * 27 17 16 48 48 H 1.09004 * 109.49696 * 176.93379 * 27 17 16 49 49 H 1.08996 * 109.63177 * 248.50605 * 28 14 12 50 50 H 1.09004 * 109.62693 * 9.08765 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0538 -0.7455 -1.2463 5 6 3.2744 -1.5197 -0.6785 6 6 2.7776 -1.8431 0.7531 7 1 2.1455 -2.7310 0.7426 8 6 3.9664 -2.0496 1.6938 9 7 3.4802 -2.4705 3.0101 10 6 4.3555 -2.7121 4.0061 11 8 5.5463 -2.5815 3.8125 12 6 3.8593 -3.1410 5.3492 13 8 2.6819 -3.3854 5.5113 14 7 4.7198 -3.2562 6.3801 15 6 4.2475 -3.6443 7.7177 16 6 4.7794 -2.6295 8.7353 17 7 6.2380 -2.5223 8.5985 18 6 6.8073 -1.6907 9.6673 19 6 8.3100 -1.8014 9.6435 20 1 8.7938 -2.4267 8.9077 21 6 9.0673 -1.1045 10.5611 22 7 8.4780 -0.3435 11.4574 23 14 10.9300 -1.2412 10.5312 24 1 11.5054 -0.4016 11.6125 25 1 11.3259 -2.6571 10.7407 26 1 11.4396 -0.7741 9.2169 27 6 6.6126 -2.0072 7.2748 28 6 6.1560 -2.9966 6.1974 29 8 2.0176 -0.6923 1.1552 30 1 -0.3633 -1.0275 0.0158 31 1 -0.3634 0.5275 0.8818 32 1 -0.3634 0.5001 -0.8979 33 1 2.3657 -0.0408 -2.0172 34 1 1.3018 -1.4347 -1.6306 35 1 4.1627 -0.8884 -0.6529 36 1 3.4601 -2.4320 -1.2453 37 1 4.5186 -1.1149 1.7922 38 1 4.6230 -2.8183 1.2862 39 1 2.5283 -2.5745 3.1650 40 1 4.6202 -4.6387 7.9634 41 1 3.1576 -3.6440 7.7356 42 1 4.5321 -2.9616 9.7436 43 1 4.3242 -1.6564 8.5505 44 1 6.4330 -2.0328 10.6322 45 1 6.5170 -0.6515 9.5127 46 1 9.0108 0.1470 12.1027 47 1 6.1320 -1.0428 7.1103 48 1 7.6949 -1.8879 7.2237 49 1 6.7121 -3.9287 6.2967 50 1 6.3278 -2.5678 5.2100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602277920.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -90.418396 kcal Electronic energy + Delta-G solvation = -29823.164420 eV Core-core repulsion = 25658.166893 eV Total energy + Delta-G solvation = -4164.997527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.93527 -40.13364 -38.69810 -37.55834 -35.56655 -34.22579 -32.79127 -32.38790 -32.14908 -30.74710 -28.77272 -28.23116 -26.05190 -24.83739 -23.49836 -23.04485 -22.17795 -21.65216 -21.15304 -20.60599 -19.37808 -17.70454 -17.47932 -16.97466 -16.37893 -16.31581 -15.93946 -15.87460 -15.10505 -14.81214 -14.71498 -14.56653 -14.31753 -14.14465 -14.00924 -13.73974 -13.56875 -13.36386 -13.34287 -12.77971 -12.63280 -12.43381 -12.35779 -12.24242 -11.92234 -11.69237 -11.48639 -11.37936 -11.28915 -11.22377 -11.01509 -10.77670 -10.70161 -10.54436 -10.49469 -10.00519 -9.87937 -9.49293 -9.26527 -8.95900 -8.55039 -8.41970 -7.27914 -6.02559 -4.04229 1.42314 2.28540 3.16482 3.22738 3.34608 3.38432 3.41430 3.52504 3.91474 4.17185 4.24673 4.32191 4.42629 4.58062 4.61181 4.79221 4.87103 4.91130 5.00678 5.09519 5.17136 5.21787 5.32661 5.33719 5.36442 5.41194 5.48194 5.53722 5.62958 5.66074 5.71562 5.76457 5.81780 5.88718 6.00892 6.27123 6.34460 6.50600 6.58102 6.60263 6.67386 6.95379 7.26126 7.32364 7.41015 7.73059 7.78508 8.00801 8.05964 8.16684 8.52120 9.02800 9.59966 11.08257 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.002070 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.763235 B =13521.607209 C =14097.825334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.074 3.926 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.148 4.148 6 C 0.067 3.933 7 H 0.080 0.920 8 C 0.119 3.881 9 N -0.696 5.696 10 C 0.512 3.488 11 O -0.507 6.507 12 C 0.503 3.497 13 O -0.537 6.537 14 N -0.569 5.569 15 C 0.113 3.887 16 C 0.041 3.959 17 N -0.537 5.537 18 C 0.193 3.807 19 C -0.509 4.509 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.899 3.101 24 H -0.288 1.288 25 H -0.276 1.276 26 H -0.277 1.277 27 C 0.052 3.948 28 C 0.056 3.944 29 O -0.370 6.370 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.416 0.584 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.027 0.973 44 H 0.031 0.969 45 H -0.009 1.009 46 H 0.262 0.738 47 H 0.022 0.978 48 H 0.098 0.902 49 H 0.073 0.927 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.651 -2.739 -26.428 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 H 0.099 0.901 4 C -0.189 4.189 5 C -0.186 4.186 6 C 0.009 3.991 7 H 0.098 0.902 8 C -0.004 4.004 9 N -0.349 5.349 10 C 0.294 3.706 11 O -0.384 6.384 12 C 0.285 3.715 13 O -0.415 6.415 14 N -0.301 5.301 15 C -0.009 4.009 16 C -0.088 4.088 17 N -0.263 5.263 18 C 0.068 3.932 19 C -0.547 4.547 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.727 3.273 24 H -0.214 1.214 25 H -0.201 1.201 26 H -0.202 1.202 27 C -0.077 4.077 28 C -0.065 4.065 29 O -0.290 6.290 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.252 0.748 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.009 0.991 46 H 0.071 0.929 47 H 0.041 0.959 48 H 0.116 0.884 49 H 0.092 0.908 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.213 -3.052 -26.052 29.834 hybrid contribution 0.287 0.762 0.071 0.818 sum -13.926 -2.290 -25.981 29.567 Atomic orbital electron populations 1.22145 0.94751 1.02681 1.02486 1.22747 0.94462 0.96452 0.84634 0.90109 1.23199 0.97675 0.99832 0.98155 1.23235 0.98997 1.01705 0.94688 1.23226 0.92200 0.90262 0.93363 0.90203 1.21667 0.95587 1.01620 0.81533 1.45690 1.11268 1.67270 1.10720 1.20321 0.86285 0.78065 0.85921 1.90388 1.15339 1.51502 1.81163 1.19865 0.86124 0.80002 0.85485 1.90721 1.16142 1.50824 1.83826 1.48180 1.09466 1.63662 1.08785 1.21944 0.99950 0.98987 0.79991 1.22391 0.90776 0.97015 0.98618 1.62128 1.06894 1.53721 1.03510 1.19724 0.95074 0.89790 0.88573 1.21109 0.90770 1.27141 1.15705 0.91815 1.25001 0.98934 0.95288 0.95416 1.69952 1.35677 1.29708 1.18444 0.86540 0.85132 0.78065 0.77551 1.21412 1.20150 1.20229 1.22353 1.02362 0.94326 0.88672 1.23475 0.77599 1.01130 1.04260 1.88522 1.70303 1.39978 1.30177 0.92151 0.91731 0.91507 0.89757 0.90220 0.89629 0.89347 0.89939 0.89435 0.74776 0.90269 0.89204 0.89837 0.95512 0.95064 0.99130 0.92860 0.95948 0.88408 0.90839 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.44 37.15 0.35 -0.56 16 2 C 0.07 0.47 4.15 -26.01 -0.11 0.36 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.15 -0.64 6.54 -24.79 -0.16 -0.81 16 5 C -0.15 -0.68 6.57 -24.48 -0.16 -0.84 16 6 C 0.07 0.45 3.47 -25.70 -0.09 0.36 16 7 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 8 C 0.12 1.00 5.38 -4.04 -0.02 0.98 16 9 N -0.70 -7.53 5.55 -60.72 -0.34 -7.87 16 10 C 0.51 7.09 7.81 -11.58 -0.09 7.00 16 11 O -0.51 -7.71 13.03 5.50 0.07 -7.64 16 12 C 0.50 7.90 7.77 -11.58 -0.09 7.81 16 13 O -0.54 -9.03 15.95 5.50 0.09 -8.94 16 14 N -0.57 -9.35 3.01 -172.97 -0.52 -9.87 16 15 C 0.11 1.81 6.59 -3.61 -0.02 1.79 16 16 C 0.04 0.76 5.62 -3.71 -0.02 0.74 16 17 N -0.54 -11.67 4.62 -235.77 -1.09 -12.76 16 18 C 0.19 5.06 4.72 -4.98 -0.02 5.03 16 19 C -0.51 -14.23 8.41 -34.44 -0.29 -14.52 16 20 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 21 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 23 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 C 0.05 1.04 5.46 -3.70 -0.02 1.02 16 28 C 0.06 0.95 6.36 -3.60 -0.02 0.92 16 29 O -0.37 -3.27 10.70 -35.23 -0.38 -3.65 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.29 7.85 -51.93 -0.41 -0.12 16 35 H 0.09 0.39 8.06 -51.93 -0.42 -0.03 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.42 4.28 7.96 -40.82 -0.32 3.95 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.36 7.07 -51.93 -0.37 0.99 16 42 H 0.08 1.47 7.99 -51.93 -0.41 1.05 16 43 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 45 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.10 2.07 6.67 -51.93 -0.35 1.72 16 49 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.15 2.43 3.92 -56.53 -0.22 2.21 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -32.59 397.65 -9.67 -42.26 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -8.34 Total: 1.10 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -0.87 Total: 10.76 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -1.21 Total: -56.51 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.22 Total: -20.23 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.59 -9.67 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602277920.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.157 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds