Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.33203 * 2 1 4 4 C 1.54475 * 110.37408 * 122.25193 * 2 1 3 5 5 C 1.54512 * 104.06401 * 142.91967 * 4 2 1 6 6 C 1.54479 * 104.06143 * 0.02562 * 5 4 2 7 7 H 1.08997 * 110.37478 * 94.85568 * 6 5 4 8 8 C 1.53005 * 110.36983 * 217.19063 * 6 5 4 9 9 N 1.46505 * 109.46891 * 184.99876 * 8 6 5 10 10 C 1.34777 * 119.99457 * 180.02562 * 9 8 6 11 11 O 1.21341 * 120.00293 * 0.02562 * 10 9 8 12 12 C 1.49457 * 119.99521 * 179.97438 * 10 9 8 13 13 O 1.21351 * 119.99831 * 6.38357 * 12 10 9 14 14 N 1.34773 * 119.99961 * 186.38145 * 12 10 9 15 15 C 1.47079 * 120.88147 * 7.93971 * 14 12 10 16 16 C 1.53693 * 108.27529 * 128.75501 * 15 14 12 17 17 N 1.46895 * 109.25608 * 54.08431 * 16 15 14 18 18 C 1.46905 * 111.00066 * 172.60574 * 17 16 15 19 19 C 1.50702 * 109.46968 * 59.47691 * 18 17 16 20 20 H 1.08006 * 120.00022 * 355.67526 * 19 18 17 21 21 C 1.37878 * 120.00273 * 175.66795 * 19 18 17 22 22 N 1.31510 * 120.00133 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99504 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47005 * 90.00034 * 23 21 19 25 25 H 1.48501 * 109.46689 * 209.99406 * 23 21 19 26 26 H 1.48496 * 109.47064 * 329.99475 * 23 21 19 27 27 C 1.46898 * 111.27172 * 296.75257 * 17 16 15 28 28 C 1.47076 * 120.88228 * 188.21985 * 14 12 10 29 29 O 1.44423 * 110.46688 * 237.68933 * 2 1 3 30 30 H 1.09004 * 109.46847 * 297.74745 * 1 2 3 31 31 H 1.09000 * 109.47099 * 57.74414 * 1 2 3 32 32 H 1.08995 * 109.47304 * 177.75447 * 1 2 3 33 33 H 1.09000 * 110.51456 * 24.27247 * 4 2 1 34 34 H 1.08997 * 110.51415 * 261.56250 * 4 2 1 35 35 H 1.08997 * 110.51133 * 118.64492 * 5 4 2 36 36 H 1.09000 * 110.51218 * 241.35361 * 5 4 2 37 37 H 1.08994 * 109.47044 * 305.00136 * 8 6 5 38 38 H 1.09002 * 109.47174 * 64.99767 * 8 6 5 39 39 H 0.96995 * 119.99847 * 359.97438 * 9 8 6 40 40 H 1.09003 * 109.62839 * 248.52298 * 15 14 12 41 41 H 1.09005 * 109.62902 * 9.10149 * 15 14 12 42 42 H 1.08998 * 109.64930 * 294.07251 * 16 15 14 43 43 H 1.09005 * 109.43724 * 173.96112 * 16 15 14 44 44 H 1.08996 * 109.47258 * 179.47932 * 18 17 16 45 45 H 1.09006 * 109.47099 * 299.48359 * 18 17 16 46 46 H 0.97004 * 119.99518 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.49075 * 303.15067 * 27 17 16 48 48 H 1.08994 * 109.51846 * 183.07828 * 27 17 16 49 49 H 1.09001 * 109.62606 * 350.89365 * 28 14 12 50 50 H 1.08997 * 109.63519 * 111.27613 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7728 1.2247 5 6 3.3194 -1.5027 0.6880 6 6 3.3901 -1.0840 -0.7972 7 1 4.0542 -0.2284 -0.9191 8 6 3.8655 -2.2557 -1.6588 9 7 4.0397 -1.8055 -3.0420 10 6 4.4550 -2.6734 -3.9858 11 8 4.6840 -3.8277 -3.6900 12 6 4.6322 -2.2143 -5.3971 13 8 4.5152 -1.0381 -5.6717 14 7 4.9220 -3.1067 -6.3646 15 6 4.8981 -4.5515 -6.0908 16 6 4.0294 -5.2307 -7.1614 17 7 4.5243 -4.8597 -8.4938 18 6 3.8351 -5.6231 -9.5427 19 6 2.3547 -5.3499 -9.4723 20 1 1.9566 -4.7324 -8.6807 21 6 1.5085 -5.8883 -10.4185 22 7 0.2167 -5.6495 -10.3573 23 14 2.1971 -6.9569 -11.7873 24 1 2.2075 -8.3759 -11.3497 25 1 1.3483 -6.8184 -12.9978 26 1 3.5828 -6.5257 -12.1023 27 6 4.3986 -3.4146 -8.7257 28 6 5.2765 -2.6612 -7.7207 29 8 2.0350 -0.7232 -1.1436 30 1 -0.3633 0.4785 0.9095 31 1 -0.3633 0.5485 -0.8691 32 1 -0.3634 -1.0268 -0.0403 33 1 1.3283 -1.4917 1.5776 34 1 2.3412 -0.0820 2.0223 35 1 4.2115 -1.1728 1.2203 36 1 3.1988 -2.5825 0.7756 37 1 4.8157 -2.6268 -1.2750 38 1 3.1242 -3.0542 -1.6272 39 1 3.8556 -0.8831 -3.2787 40 1 5.9123 -4.9488 -6.1317 41 1 4.4715 -4.7301 -5.1037 42 1 2.9946 -4.9055 -7.0541 43 1 4.0850 -6.3126 -7.0409 44 1 4.2140 -5.3223 -10.5194 45 1 4.0154 -6.6880 -9.3952 46 1 -0.3785 -6.0280 -11.0232 47 1 3.3586 -3.1147 -8.5966 48 1 4.7221 -3.1790 -9.7395 49 1 5.1002 -1.5895 -7.8119 50 1 6.3273 -2.8770 -7.9141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602277922.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -116.983981 kcal Electronic energy + Delta-G solvation = -30058.920014 eV Core-core repulsion = 25892.770516 eV Total energy + Delta-G solvation = -4166.149497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.06595 -40.71008 -39.91074 -39.05137 -36.68113 -35.71969 -34.34509 -33.23470 -32.77763 -32.17171 -30.55310 -29.32457 -27.62198 -25.91010 -24.74020 -24.24112 -23.24329 -22.57008 -22.07189 -21.66336 -20.64111 -19.19182 -18.54621 -18.25377 -17.69988 -17.28594 -16.90872 -16.79059 -16.46071 -16.44559 -16.11711 -15.89747 -15.55094 -15.49120 -15.01995 -14.83920 -14.70109 -14.45280 -14.08710 -14.02100 -13.88275 -13.68669 -13.17236 -13.14006 -13.04964 -12.92636 -12.74950 -12.60192 -12.40719 -12.26708 -12.18503 -12.15564 -11.98292 -11.77813 -11.75065 -11.67109 -11.52392 -10.81499 -10.76365 -10.48198 -10.27155 -9.92303 -9.08139 -8.33312 -6.39945 0.24671 1.19988 1.36361 1.37796 1.49607 2.02907 2.32998 2.34404 2.77009 3.01772 3.20974 3.23781 3.51781 3.70105 3.94521 3.96161 4.01785 4.03987 4.12547 4.24791 4.31919 4.33409 4.42262 4.48864 4.50388 4.54306 4.55802 4.70227 4.74927 4.81158 4.86261 4.95893 4.97057 5.03168 5.03525 5.04829 5.09805 5.14290 5.19175 5.20595 5.26579 5.31854 5.46118 5.85691 5.93007 6.01605 6.16162 6.27971 6.29562 6.57878 6.66834 6.83069 7.27291 8.83372 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.002289 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.316732 B =12230.310460 C =13093.331939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 H 0.078 0.922 4 C -0.147 4.147 5 C -0.143 4.143 6 C 0.061 3.939 7 H 0.092 0.908 8 C 0.123 3.877 9 N -0.685 5.685 10 C 0.512 3.488 11 O -0.524 6.524 12 C 0.501 3.499 13 O -0.550 6.550 14 N -0.580 5.580 15 C 0.093 3.907 16 C 0.049 3.951 17 N -0.524 5.524 18 C 0.158 3.842 19 C -0.552 4.552 20 H 0.026 0.974 21 C 0.008 3.992 22 N -0.951 5.951 23 Si 0.955 3.045 24 H -0.266 1.266 25 H -0.287 1.287 26 H -0.240 1.240 27 C 0.051 3.949 28 C 0.121 3.879 29 O -0.396 6.396 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.418 0.582 40 H 0.094 0.906 41 H 0.133 0.867 42 H 0.006 0.994 43 H 0.087 0.913 44 H 0.039 0.961 45 H 0.036 0.964 46 H 0.266 0.734 47 H 0.006 0.994 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.605 10.400 24.383 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.003 3.997 3 H 0.096 0.904 4 C -0.184 4.184 5 C -0.181 4.181 6 C 0.004 3.996 7 H 0.109 0.891 8 C 0.000 4.000 9 N -0.338 5.338 10 C 0.293 3.707 11 O -0.403 6.403 12 C 0.284 3.716 13 O -0.429 6.429 14 N -0.312 5.312 15 C -0.029 4.029 16 C -0.080 4.080 17 N -0.247 5.247 18 C 0.031 3.969 19 C -0.591 4.591 20 H 0.044 0.956 21 C -0.190 4.190 22 N -0.591 5.591 23 Si 0.778 3.222 24 H -0.191 1.191 25 H -0.213 1.213 26 H -0.163 1.163 27 C -0.078 4.078 28 C -0.001 4.001 29 O -0.317 6.317 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.255 0.745 40 H 0.112 0.888 41 H 0.150 0.850 42 H 0.024 0.976 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.024 0.976 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.937 10.003 24.174 28.356 hybrid contribution -1.683 0.178 -0.975 1.953 sum 9.254 10.181 23.199 26.972 Atomic orbital electron populations 1.21836 0.93133 1.02533 1.03053 1.23202 0.95644 0.95906 0.84939 0.90388 1.23007 0.97397 1.00031 0.97992 1.22923 0.99934 1.02230 0.93033 1.23346 0.84975 0.96540 0.94766 0.89065 1.21780 1.02629 0.96919 0.78643 1.45750 1.64783 1.14342 1.08879 1.19950 0.78556 0.85801 0.86391 1.90520 1.50919 1.17604 1.81231 1.20298 0.78364 0.85900 0.87056 1.90712 1.51305 1.17582 1.83259 1.48190 1.64434 1.08059 1.10519 1.23000 1.02151 0.76896 1.00806 1.22433 0.95547 1.00713 0.89333 1.62495 1.54860 1.04819 1.02504 1.20128 0.90242 0.94587 0.91959 1.21908 0.93632 1.31538 1.12033 0.95551 1.26014 0.94784 0.97508 1.00718 1.70103 1.04814 1.46830 1.37351 0.85600 0.79704 0.79150 0.77781 1.19055 1.21263 1.16291 1.22276 0.97049 0.88762 0.99738 1.21947 1.00006 0.99505 0.78661 1.89222 1.27344 1.75152 1.39973 0.89015 0.92901 0.92717 0.90420 0.88416 0.87837 0.90007 0.87639 0.91140 0.74514 0.88807 0.84972 0.97580 0.89463 0.94263 0.94596 0.92520 0.97572 0.88976 0.88805 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.52 71.98 0.69 -1.24 16 2 C 0.06 0.79 3.92 31.09 0.12 0.91 16 3 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.15 -1.26 6.63 31.61 0.21 -1.05 16 5 C -0.14 -1.23 6.63 31.61 0.21 -1.02 16 6 C 0.06 0.83 3.32 31.10 0.10 0.93 16 7 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 8 C 0.12 2.10 5.28 86.38 0.46 2.56 16 9 N -0.69 -15.45 5.55 -464.40 -2.58 -18.03 16 10 C 0.51 14.59 7.75 87.27 0.68 15.26 16 11 O -0.52 -15.95 13.19 -3.22 -0.04 -15.99 16 12 C 0.50 16.34 7.75 87.27 0.68 17.02 16 13 O -0.55 -19.49 15.96 -3.25 -0.05 -19.54 16 14 N -0.58 -19.13 3.00 -818.63 -2.46 -21.58 16 15 C 0.09 2.98 6.14 86.50 0.53 3.51 16 16 C 0.05 1.93 5.17 86.54 0.45 2.38 16 17 N -0.52 -21.33 4.83 -898.88 -4.34 -25.67 16 18 C 0.16 7.41 4.20 85.56 0.36 7.76 16 19 C -0.55 -31.68 8.32 25.60 0.21 -31.47 16 20 H 0.03 1.72 6.12 -2.91 -0.02 1.71 16 21 C 0.01 0.44 5.47 84.66 0.46 0.90 16 22 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 23 Si 0.95 43.74 27.56 68.60 1.89 45.63 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.24 -10.01 6.42 99.48 0.64 -9.37 16 27 C 0.05 1.97 5.25 86.38 0.45 2.43 16 28 C 0.12 3.80 6.61 86.35 0.57 4.37 16 29 O -0.40 -7.67 11.04 -148.98 -1.64 -9.32 16 30 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.70 7.87 -2.39 -0.02 0.68 16 34 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.08 0.73 7.87 -2.39 -0.02 0.71 16 37 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.42 9.11 7.96 -92.71 -0.74 8.37 16 40 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.13 4.30 4.43 -39.52 -0.18 4.13 16 42 H 0.01 0.28 6.63 -2.39 -0.02 0.27 16 43 H 0.09 3.28 8.11 -2.38 -0.02 3.26 16 44 H 0.04 1.79 6.82 -2.39 -0.02 1.78 16 45 H 0.04 1.63 7.79 -2.38 -0.02 1.61 16 46 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 47 H 0.01 0.28 7.10 -2.39 -0.02 0.26 16 48 H 0.09 3.31 8.06 -2.39 -0.02 3.29 16 49 H 0.09 2.92 7.05 -2.39 -0.02 2.91 16 50 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -74.07 391.33 -2.77 -76.84 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.02 Total: 24.43 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 6.18 Total: 23.26 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -9.07 Total: -125.31 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -1.74 Total: -44.85 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.89 Total: 45.63 kcal Total: -74.07 -2.77 -76.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602277922.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.143 kcal (2) G-P(sol) polarization free energy of solvation -74.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds