Wall clock time and date at job start Sat Apr 11 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00153 * 2 1 4 4 O 1.20825 * 119.99941 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99777 * 179.72748 * 3 2 1 6 6 H 1.08999 * 110.64511 * 326.95741 * 5 3 2 7 7 C 1.55167 * 110.71766 * 203.81988 * 5 3 2 8 8 C 1.54910 * 101.58135 * 206.13475 * 7 5 3 9 9 N 1.47433 * 104.83199 * 37.00926 * 8 7 5 10 10 C 1.34774 * 125.64768 * 155.91189 * 9 8 7 11 11 O 1.21585 * 119.99975 * 179.97438 * 10 9 8 12 12 N 1.34779 * 119.99869 * 359.97221 * 10 9 8 13 13 C 1.46499 * 119.99955 * 180.02562 * 12 10 9 14 14 C 1.53041 * 109.46012 * 275.06923 * 13 12 10 15 15 C 1.53183 * 109.31628 * 178.61420 * 14 13 12 16 16 N 1.46925 * 108.77780 * 54.63098 * 15 14 13 17 17 C 1.36941 * 120.62901 * 126.36773 * 16 15 14 18 18 H 1.08002 * 119.99882 * 208.20495 * 17 16 15 19 19 C 1.38810 * 119.99904 * 28.21169 * 17 16 15 20 20 N 1.31615 * 120.00271 * 16.87739 * 19 17 16 21 21 Si 1.86806 * 119.99771 * 196.88227 * 19 17 16 22 22 H 1.48496 * 109.47095 * 59.99709 * 21 19 17 23 23 H 1.48497 * 109.47208 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46696 * 299.99852 * 21 19 17 25 25 C 1.46920 * 118.73958 * 306.39683 * 16 15 14 26 26 C 1.53036 * 109.46517 * 154.99981 * 13 12 10 27 27 C 1.47320 * 108.73320 * 335.71393 * 9 8 7 28 28 H 1.08999 * 110.06390 * 241.87119 * 27 9 8 29 29 C 1.53002 * 109.84760 * 120.61504 * 27 9 8 30 30 H 1.09001 * 109.47618 * 60.00196 * 1 2 3 31 31 H 1.09003 * 109.47452 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47061 * 299.99553 * 1 2 3 33 33 H 1.08995 * 111.00200 * 324.20720 * 7 5 3 34 34 H 1.08998 * 111.00317 * 88.05875 * 7 5 3 35 35 H 1.09001 * 110.36537 * 155.84325 * 8 7 5 36 36 H 1.09000 * 110.36665 * 278.17424 * 8 7 5 37 37 H 0.96998 * 120.00246 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.46345 * 35.02294 * 13 12 10 39 39 H 1.09004 * 109.49334 * 298.56659 * 14 13 12 40 40 H 1.09001 * 109.50189 * 58.65659 * 14 13 12 41 41 H 1.09004 * 109.58749 * 294.84155 * 15 14 13 42 42 H 1.09006 * 109.58832 * 174.42099 * 15 14 13 43 43 H 0.96996 * 120.00077 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58586 * 293.82038 * 25 16 15 45 45 H 1.08995 * 109.70809 * 173.46282 * 25 16 15 46 46 H 1.09004 * 109.49719 * 301.33883 * 26 13 12 47 47 H 1.09000 * 109.49481 * 61.39850 * 26 13 12 48 48 H 1.09005 * 109.46840 * 297.80125 * 29 27 9 49 49 H 1.08994 * 109.47208 * 57.79817 * 29 27 9 50 50 H 1.08997 * 109.47249 * 177.80525 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0062 6 1 3.9924 0.4422 0.5660 7 6 4.0425 2.6306 0.5914 8 6 5.4229 2.7965 -0.0918 9 7 5.2376 2.2597 -1.4523 10 6 5.9738 2.5867 -2.5328 11 8 5.7308 2.0788 -3.6104 12 7 6.9794 3.4768 -2.4187 13 6 7.7793 3.8327 -3.5933 14 6 8.9010 2.8077 -3.7760 15 6 9.7140 3.1634 -5.0246 16 7 10.1790 4.5521 -4.9065 17 6 11.5071 4.8571 -5.0419 18 1 11.9178 5.7180 -4.5353 19 6 12.3254 4.0599 -5.8304 20 7 11.7930 3.2280 -6.7003 21 14 14.1822 4.1677 -5.6566 22 1 14.5705 3.8166 -4.2670 23 1 14.8238 3.2207 -6.6036 24 1 14.6283 5.5511 -5.9607 25 6 9.1920 5.6072 -4.6397 26 6 8.3848 5.2242 -3.3954 27 6 4.1175 1.3028 -1.4349 28 1 4.4692 0.3103 -1.7167 29 6 3.0248 1.7646 -2.4011 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 3.3668 3.4374 0.3079 34 1 4.1472 2.5733 1.6749 35 1 5.7011 3.8496 -0.1342 36 1 6.1816 2.2239 0.4418 37 1 7.1730 3.8823 -1.5591 38 1 7.1432 3.8361 -4.4785 39 1 9.5520 2.8213 -2.9018 40 1 8.4698 1.8135 -3.8935 41 1 9.0867 3.0621 -5.9102 42 1 10.5723 2.4961 -5.1040 43 1 12.3649 2.6712 -7.2516 44 1 8.5220 5.7053 -5.4939 45 1 9.7038 6.5538 -4.4662 46 1 7.5862 5.9500 -3.2421 47 1 9.0403 5.2151 -2.5245 48 1 2.6362 2.7296 -2.0758 49 1 3.4426 1.8603 -3.4032 50 1 2.2170 1.0329 -2.4126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786753321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:50 Heat of formation + Delta-G solvation = -86.323535 kcal Electronic energy + Delta-G solvation = -30571.110786 eV Core-core repulsion = 26406.290826 eV Total energy + Delta-G solvation = -4164.819960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.40395 -40.13070 -38.33472 -37.14081 -36.58417 -34.42274 -32.76112 -31.65929 -31.45230 -29.95610 -29.32749 -28.36682 -26.50778 -25.08846 -23.56983 -23.00244 -22.18962 -21.74832 -20.28871 -19.78759 -19.25797 -18.16347 -17.85931 -17.07881 -16.85396 -16.63242 -16.07721 -15.78162 -14.96160 -14.81328 -14.52585 -14.06147 -13.95611 -13.71952 -13.57698 -13.45343 -13.41466 -12.97489 -12.91318 -12.70743 -12.49254 -12.42352 -12.36365 -12.32936 -11.89865 -11.45940 -11.33175 -11.25473 -11.17452 -11.07972 -10.89885 -10.77218 -10.70002 -10.35556 -10.23118 -10.06297 -9.91169 -9.72646 -9.52865 -8.90106 -8.55405 -8.35296 -6.65559 -5.75867 -3.19087 1.73150 2.16215 2.65734 3.34770 3.39907 3.45876 3.46686 3.84758 3.92939 4.19367 4.34505 4.51450 4.64431 4.66393 4.69776 4.77834 4.86120 5.07985 5.09954 5.18317 5.26321 5.29428 5.33152 5.42762 5.45865 5.49102 5.67339 5.68750 5.78127 5.87177 5.90996 6.03695 6.12029 6.21605 6.27126 6.41399 6.49116 6.63853 6.68593 6.81345 6.94026 6.98902 7.11923 7.32025 7.42487 7.71755 7.81728 8.08628 8.47899 8.75622 9.23643 9.86959 10.43923 11.32638 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031589 B = 0.002103 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.166842 B =13314.221223 C =13497.578881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.479 3.521 4 O -0.500 6.500 5 C -0.097 4.097 6 H 0.119 0.881 7 C -0.117 4.117 8 C 0.101 3.899 9 N -0.638 5.638 10 C 0.723 3.277 11 O -0.581 6.581 12 N -0.736 5.736 13 C 0.169 3.831 14 C -0.146 4.146 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.149 3.851 26 C -0.138 4.138 27 C 0.174 3.826 28 H 0.089 0.911 29 C -0.176 4.176 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.389 0.611 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.021 0.979 42 H 0.089 0.911 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.086 0.914 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 -4.709 18.397 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.321 3.679 4 O -0.387 6.387 5 C -0.117 4.117 6 H 0.137 0.863 7 C -0.155 4.155 8 C -0.023 4.023 9 N -0.378 5.378 10 C 0.425 3.575 11 O -0.458 6.458 12 N -0.390 5.390 13 C 0.065 3.935 14 C -0.187 4.187 15 C 0.048 3.952 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.022 3.978 26 C -0.178 4.178 27 C 0.070 3.930 28 H 0.106 0.894 29 C -0.234 4.234 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.223 0.777 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.104 0.896 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.494 -4.863 17.344 27.285 hybrid contribution 0.785 0.162 0.610 1.007 sum -19.709 -4.701 17.954 27.072 Atomic orbital electron populations 1.23303 0.76046 1.03890 1.02676 1.86525 1.23642 1.33259 1.83964 1.23150 0.91297 0.81495 0.71921 1.90677 1.66846 1.36268 1.44874 1.22180 0.88180 1.02066 0.99301 0.86286 1.22835 0.96557 0.95481 1.00655 1.22283 0.97099 0.99905 0.82987 1.47684 1.35037 1.47043 1.08080 1.15442 0.79231 0.80182 0.82608 1.90927 1.72013 1.57341 1.25504 1.45551 1.34175 1.45792 1.13467 1.20928 0.91320 0.94678 0.86567 1.22576 0.96736 0.97560 1.01791 1.20760 0.96834 0.86583 0.91063 1.44095 1.03079 1.01065 1.83270 1.19123 0.83853 1.12396 1.23052 0.91726 1.25068 0.98299 1.00430 0.95843 1.70023 1.34051 1.27688 1.22747 0.86370 0.85606 0.77406 0.77357 1.21078 1.21658 1.20895 1.20827 0.91422 0.92698 0.92876 1.22344 0.99121 0.94750 1.01616 1.21108 0.86638 0.93649 0.91621 0.89353 1.22349 0.97464 1.01558 1.01991 0.91720 0.87931 0.91814 0.88617 0.88967 0.90200 0.90880 0.77716 0.90059 0.92831 0.92814 0.96119 0.89319 0.93529 0.96186 0.92353 0.92697 0.91934 0.91731 0.89556 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.95 10.56 -39.26 -0.41 -3.36 16 3 C 0.48 4.37 5.10 36.00 0.18 4.55 16 4 O -0.50 -5.70 14.73 -18.75 -0.28 -5.97 16 5 C -0.10 -0.74 3.37 -89.94 -0.30 -1.05 16 6 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 7 C -0.12 -0.79 6.39 -24.58 -0.16 -0.94 16 8 C 0.10 0.76 6.57 -2.52 -0.02 0.75 16 9 N -0.64 -7.41 3.09 -168.46 -0.52 -7.93 16 10 C 0.72 11.30 8.24 -86.92 -0.72 10.58 16 11 O -0.58 -11.47 14.85 5.29 0.08 -11.39 16 12 N -0.74 -10.69 5.04 -58.64 -0.30 -10.99 16 13 C 0.17 2.99 2.41 -67.89 -0.16 2.82 16 14 C -0.15 -2.96 5.65 -26.62 -0.15 -3.11 16 15 C 0.17 4.28 5.30 -3.72 -0.02 4.26 16 16 N -0.59 -14.85 2.99 -172.33 -0.52 -15.37 16 17 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -26.47 11.20 55.49 0.62 -25.85 16 21 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.15 3.08 6.51 -3.72 -0.02 3.06 16 26 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 27 C 0.17 1.83 3.45 -66.79 -0.23 1.60 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 29 C -0.18 -2.06 8.11 37.16 0.30 -1.76 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 33 H 0.10 0.80 7.22 -51.93 -0.37 0.42 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.54 7.30 -51.93 -0.38 0.16 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.39 4.50 7.08 -40.82 -0.29 4.22 16 38 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.80 7.42 -51.93 -0.39 0.41 16 49 H 0.09 1.25 6.63 -51.93 -0.34 0.90 16 50 H 0.06 0.61 7.28 -51.93 -0.38 0.24 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -34.11 391.61 -9.37 -43.49 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.31 Total: 2.35 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -0.61 Total: 12.44 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.71 Total: -60.13 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.61 Total: -20.73 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.11 -9.37 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786753321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.837 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds