Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00153 * 2 1 4 4 O 1.20825 * 119.99941 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99777 * 179.72748 * 3 2 1 6 6 H 1.08999 * 110.64511 * 326.95741 * 5 3 2 7 7 C 1.55167 * 110.71766 * 203.81988 * 5 3 2 8 8 C 1.54910 * 101.58135 * 206.13475 * 7 5 3 9 9 N 1.47433 * 104.83199 * 37.00926 * 8 7 5 10 10 C 1.34774 * 125.64768 * 155.91189 * 9 8 7 11 11 O 1.21585 * 119.99975 * 179.97438 * 10 9 8 12 12 N 1.34779 * 119.99869 * 359.97221 * 10 9 8 13 13 C 1.46499 * 119.99955 * 180.02562 * 12 10 9 14 14 C 1.53041 * 109.46012 * 275.06923 * 13 12 10 15 15 C 1.53183 * 109.31628 * 178.61420 * 14 13 12 16 16 N 1.46925 * 108.77780 * 54.63098 * 15 14 13 17 17 C 1.36941 * 120.62901 * 126.36773 * 16 15 14 18 18 H 1.08002 * 119.99882 * 208.20495 * 17 16 15 19 19 C 1.38810 * 119.99904 * 28.21169 * 17 16 15 20 20 N 1.31615 * 120.00271 * 16.87739 * 19 17 16 21 21 Si 1.86806 * 119.99771 * 196.88227 * 19 17 16 22 22 H 1.48496 * 109.47095 * 59.99709 * 21 19 17 23 23 H 1.48497 * 109.47208 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46696 * 299.99852 * 21 19 17 25 25 C 1.46920 * 118.73958 * 306.39683 * 16 15 14 26 26 C 1.53036 * 109.46517 * 154.99981 * 13 12 10 27 27 C 1.47320 * 108.73320 * 335.71393 * 9 8 7 28 28 H 1.08999 * 110.06390 * 241.87119 * 27 9 8 29 29 C 1.53002 * 109.84760 * 120.61504 * 27 9 8 30 30 H 1.09001 * 109.47618 * 60.00196 * 1 2 3 31 31 H 1.09003 * 109.47452 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47061 * 299.99553 * 1 2 3 33 33 H 1.08995 * 111.00200 * 324.20720 * 7 5 3 34 34 H 1.08998 * 111.00317 * 88.05875 * 7 5 3 35 35 H 1.09001 * 110.36537 * 155.84325 * 8 7 5 36 36 H 1.09000 * 110.36665 * 278.17424 * 8 7 5 37 37 H 0.96998 * 120.00246 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.46345 * 35.02294 * 13 12 10 39 39 H 1.09004 * 109.49334 * 298.56659 * 14 13 12 40 40 H 1.09001 * 109.50189 * 58.65659 * 14 13 12 41 41 H 1.09004 * 109.58749 * 294.84155 * 15 14 13 42 42 H 1.09006 * 109.58832 * 174.42099 * 15 14 13 43 43 H 0.96996 * 120.00077 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58586 * 293.82038 * 25 16 15 45 45 H 1.08995 * 109.70809 * 173.46282 * 25 16 15 46 46 H 1.09004 * 109.49719 * 301.33883 * 26 13 12 47 47 H 1.09000 * 109.49481 * 61.39850 * 26 13 12 48 48 H 1.09005 * 109.46840 * 297.80125 * 29 27 9 49 49 H 1.08994 * 109.47208 * 57.79817 * 29 27 9 50 50 H 1.08997 * 109.47249 * 177.80525 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0062 6 1 3.9924 0.4422 0.5660 7 6 4.0425 2.6306 0.5914 8 6 5.4229 2.7965 -0.0918 9 7 5.2376 2.2597 -1.4523 10 6 5.9738 2.5867 -2.5328 11 8 5.7308 2.0788 -3.6104 12 7 6.9794 3.4768 -2.4187 13 6 7.7793 3.8327 -3.5933 14 6 8.9010 2.8077 -3.7760 15 6 9.7140 3.1634 -5.0246 16 7 10.1790 4.5521 -4.9065 17 6 11.5071 4.8571 -5.0419 18 1 11.9178 5.7180 -4.5353 19 6 12.3254 4.0599 -5.8304 20 7 11.7930 3.2280 -6.7003 21 14 14.1822 4.1677 -5.6566 22 1 14.5705 3.8166 -4.2670 23 1 14.8238 3.2207 -6.6036 24 1 14.6283 5.5511 -5.9607 25 6 9.1920 5.6072 -4.6397 26 6 8.3848 5.2242 -3.3954 27 6 4.1175 1.3028 -1.4349 28 1 4.4692 0.3103 -1.7167 29 6 3.0248 1.7646 -2.4011 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 3.3668 3.4374 0.3079 34 1 4.1472 2.5733 1.6749 35 1 5.7011 3.8496 -0.1342 36 1 6.1816 2.2239 0.4418 37 1 7.1730 3.8823 -1.5591 38 1 7.1432 3.8361 -4.4785 39 1 9.5520 2.8213 -2.9018 40 1 8.4698 1.8135 -3.8935 41 1 9.0867 3.0621 -5.9102 42 1 10.5723 2.4961 -5.1040 43 1 12.3649 2.6712 -7.2516 44 1 8.5220 5.7053 -5.4939 45 1 9.7038 6.5538 -4.4662 46 1 7.5862 5.9500 -3.2421 47 1 9.0403 5.2151 -2.5245 48 1 2.6362 2.7296 -2.0758 49 1 3.4426 1.8603 -3.4032 50 1 2.2170 1.0329 -2.4126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786753321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -108.394911 kcal Electronic energy + Delta-G solvation = -30572.067873 eV Core-core repulsion = 26406.290826 eV Total energy + Delta-G solvation = -4165.777047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.16781 -41.16465 -39.52754 -38.44053 -37.39027 -36.00804 -34.18856 -33.03185 -32.25981 -31.66131 -30.94306 -29.00635 -27.23943 -26.88827 -24.75396 -23.89706 -23.62633 -23.28410 -21.21057 -21.08656 -20.52496 -19.23351 -18.67726 -18.53094 -17.74818 -17.45908 -17.26301 -16.82794 -16.67751 -15.97246 -15.79513 -15.38180 -15.33568 -14.87284 -14.78592 -14.66914 -14.50466 -14.16174 -14.09413 -13.94582 -13.67340 -13.40148 -13.22903 -13.14445 -12.99248 -12.95656 -12.70967 -12.58054 -12.54760 -12.11712 -12.07838 -12.03651 -11.86280 -11.83705 -11.79055 -11.53467 -11.49662 -11.38749 -11.13314 -10.56137 -10.12864 -9.55691 -8.69940 -7.85734 -5.32393 1.01347 1.40723 1.48772 1.51601 1.58289 1.81445 2.14524 2.53097 2.96201 3.28177 3.30869 3.36103 3.68117 3.71495 3.88951 3.98456 4.09671 4.11750 4.20123 4.26697 4.29909 4.33537 4.35556 4.41198 4.49336 4.59663 4.66015 4.68693 4.72313 4.81295 4.81951 4.87837 4.89675 5.04745 5.08421 5.10645 5.13942 5.17241 5.32168 5.33757 5.35708 5.47201 5.61338 5.65533 5.71064 6.02575 6.40056 6.66120 6.99785 7.14727 7.58384 7.85678 8.38822 9.21258 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031589 B = 0.002103 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.166842 B =13314.221223 C =13497.578881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.479 3.521 4 O -0.527 6.527 5 C -0.088 4.088 6 H 0.150 0.850 7 C -0.109 4.109 8 C 0.094 3.906 9 N -0.634 5.634 10 C 0.718 3.282 11 O -0.631 6.631 12 N -0.722 5.722 13 C 0.182 3.818 14 C -0.128 4.128 15 C 0.183 3.817 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.074 0.926 19 C -0.056 4.056 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.276 1.276 23 H -0.298 1.298 24 H -0.273 1.273 25 C 0.141 3.859 26 C -0.120 4.120 27 C 0.168 3.832 28 H 0.085 0.915 29 C -0.166 4.166 30 H 0.057 0.943 31 H 0.130 0.870 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.409 0.591 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.043 0.957 41 H -0.013 1.013 42 H 0.055 0.945 43 H 0.249 0.751 44 H 0.010 0.990 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.056 0.944 49 H 0.053 0.947 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.428 -4.071 22.116 30.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.323 3.677 4 O -0.415 6.415 5 C -0.108 4.108 6 H 0.168 0.832 7 C -0.147 4.147 8 C -0.027 4.027 9 N -0.373 5.373 10 C 0.419 3.581 11 O -0.511 6.511 12 N -0.377 5.377 13 C 0.076 3.924 14 C -0.169 4.169 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.092 0.908 19 C -0.251 4.251 20 N -0.585 5.585 21 Si 0.798 3.202 22 H -0.201 1.201 23 H -0.225 1.225 24 H -0.199 1.199 25 C 0.016 3.984 26 C -0.159 4.159 27 C 0.064 3.936 28 H 0.103 0.897 29 C -0.224 4.224 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.144 0.856 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.246 0.754 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.005 0.995 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.704 -4.197 21.159 29.899 hybrid contribution 0.703 -0.049 -0.562 0.902 sum -20.001 -4.245 20.596 29.022 Atomic orbital electron populations 1.23555 0.74778 1.05714 1.02555 1.86521 1.24971 1.32775 1.83540 1.23425 0.91848 0.81317 0.71125 1.90671 1.67576 1.37150 1.46147 1.22213 0.87208 1.04005 0.97352 0.83213 1.22843 0.95291 0.94112 1.02433 1.22640 0.98422 1.01006 0.80647 1.47652 1.34217 1.46685 1.08724 1.15610 0.79580 0.79986 0.82876 1.90903 1.73320 1.58996 1.27921 1.45110 1.33534 1.45769 1.13302 1.20509 0.90192 0.94640 0.87036 1.22302 0.97078 0.97874 0.99600 1.20464 0.95435 0.86481 0.91972 1.44341 1.03463 1.01975 1.83450 1.19536 0.85074 1.12245 1.22256 0.90789 1.25902 1.02743 1.00600 0.95852 1.70206 1.35340 1.28940 1.24027 0.85294 0.80182 0.77425 0.77259 1.20145 1.22482 1.19856 1.21034 0.90916 0.92097 0.94399 1.22130 0.99633 0.94433 0.99752 1.21204 0.85924 0.93116 0.93374 0.89671 1.22219 0.98104 1.01489 1.00601 0.92383 0.85217 0.91443 0.90345 0.85641 0.88873 0.88422 0.75411 0.92890 0.91954 0.93843 0.99477 0.92655 0.94203 0.97226 0.91247 0.89250 0.90422 0.92532 0.92788 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.30 10.56 -51.41 -0.54 -5.84 16 3 C 0.48 7.88 5.10 71.23 0.36 8.25 16 4 O -0.53 -11.42 14.73 21.97 0.32 -11.09 16 5 C -0.09 -1.10 3.37 -10.35 -0.03 -1.14 16 6 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 7 C -0.11 -1.08 6.39 31.99 0.20 -0.87 16 8 C 0.09 1.08 6.57 86.85 0.57 1.66 16 9 N -0.63 -13.62 3.09 -805.16 -2.49 -16.11 16 10 C 0.72 21.94 8.24 179.05 1.47 23.41 16 11 O -0.63 -25.68 14.85 -3.98 -0.06 -25.74 16 12 N -0.72 -19.61 5.04 -457.69 -2.31 -21.92 16 13 C 0.18 6.30 2.41 45.02 0.11 6.41 16 14 C -0.13 -5.24 5.65 30.67 0.17 -5.06 16 15 C 0.18 9.39 5.30 86.36 0.46 9.84 16 16 N -0.61 -30.84 2.99 -699.12 -2.09 -32.94 16 17 C -0.26 -14.29 9.58 84.03 0.81 -13.48 16 18 H 0.07 3.84 7.88 -2.91 -0.02 3.82 16 19 C -0.06 -3.16 4.92 84.86 0.42 -2.74 16 20 N -0.94 -57.22 11.20 21.65 0.24 -56.98 16 21 Si 0.97 45.02 29.59 68.60 2.03 47.05 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 C 0.14 5.73 6.51 86.36 0.56 6.29 16 26 C -0.12 -3.71 5.55 30.67 0.17 -3.54 16 27 C 0.17 3.32 3.45 45.28 0.16 3.48 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 C -0.17 -3.96 8.11 71.98 0.58 -3.38 16 30 H 0.06 0.65 8.13 -2.39 -0.02 0.64 16 31 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.62 8.13 -2.39 -0.02 0.60 16 33 H 0.08 1.11 7.22 -2.39 -0.02 1.09 16 34 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.86 7.30 -2.39 -0.02 0.85 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.41 7.98 7.08 -92.71 -0.66 7.33 16 38 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 39 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 41 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H 0.06 3.18 6.06 -2.38 -0.01 3.17 16 43 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.07 2.64 7.94 -2.39 -0.02 2.62 16 46 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.06 1.42 7.42 -2.38 -0.02 1.40 16 49 H 0.05 1.65 6.63 -2.39 -0.02 1.63 16 50 H 0.07 1.43 7.28 -2.39 -0.02 1.41 16 Total: -1.00 -78.53 391.61 2.60 -75.93 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.28 Total: 17.05 kcal Atomic # 6 Polarization: 23.38 SS G_CDS: 7.21 Total: 30.59 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -6.64 Total: -127.94 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.28 Total: -42.67 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -78.53 2.60 -75.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786753321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.464 kcal (2) G-P(sol) polarization free energy of solvation -78.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds