Wall clock time and date at job start Sat Apr 11 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.55386 * 2 1 4 4 C 1.54998 * 110.74994 * 122.96617 * 2 1 3 5 5 C 1.54812 * 102.09076 * 155.58846 * 4 2 1 6 6 H 1.09003 * 110.60343 * 97.85186 * 5 4 2 7 7 C 1.50705 * 110.48893 * 220.44748 * 5 4 2 8 8 O 1.21273 * 119.99891 * 356.22122 * 7 5 4 9 9 N 1.34774 * 119.99624 * 176.22079 * 7 5 4 10 10 C 1.47766 * 121.65684 * 0.02562 * 9 7 5 11 11 C 1.52999 * 108.79268 * 86.88211 * 10 9 7 12 12 C 1.50699 * 109.49525 * 57.61200 * 11 10 9 13 13 O 1.21286 * 120.44590 * 67.24498 * 12 11 10 14 14 N 1.36104 * 119.10220 * 247.22642 * 12 11 10 15 15 C 1.47661 * 116.57791 * 180.35593 * 14 12 11 16 16 C 1.53578 * 108.91747 * 256.67785 * 15 14 12 17 17 N 1.47748 * 108.50591 * 56.06517 * 16 15 14 18 18 C 1.36941 * 121.64890 * 86.22418 * 17 16 15 19 19 H 1.07995 * 120.00364 * 211.17094 * 18 17 16 20 20 C 1.38817 * 119.99917 * 31.16650 * 18 17 16 21 21 N 1.31626 * 119.99774 * 28.69682 * 20 18 17 22 22 Si 1.86796 * 119.99961 * 208.69564 * 20 18 17 23 23 H 1.48498 * 109.47368 * 60.00055 * 22 20 18 24 24 H 1.48505 * 109.47167 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47172 * 299.99860 * 22 20 18 26 26 C 1.47753 * 116.69899 * 265.95472 * 17 16 15 27 27 C 1.47755 * 121.64734 * 179.97438 * 9 7 5 28 28 C 1.54100 * 104.18690 * 339.12219 * 5 4 2 29 29 O 1.43738 * 107.29698 * 357.96932 * 28 5 4 30 30 H 1.08992 * 109.47179 * 181.42614 * 1 2 3 31 31 H 1.09005 * 109.47403 * 301.43229 * 1 2 3 32 32 H 1.09002 * 109.46666 * 61.42550 * 1 2 3 33 33 H 1.09008 * 110.90527 * 37.39701 * 4 2 1 34 34 H 1.08994 * 110.91198 * 273.78927 * 4 2 1 35 35 H 1.08994 * 109.58511 * 206.67551 * 10 9 7 36 36 H 1.08998 * 109.58034 * 327.09168 * 10 9 7 37 37 H 1.08997 * 109.47069 * 177.62261 * 11 10 9 38 38 H 1.09006 * 109.46713 * 297.61518 * 11 10 9 39 39 H 0.96999 * 121.71237 * 0.32587 * 14 12 11 40 40 H 1.08999 * 109.57231 * 16.55244 * 15 14 12 41 41 H 1.08998 * 109.57255 * 136.79468 * 15 14 12 42 42 H 1.08993 * 109.59755 * 296.44464 * 16 15 14 43 43 H 1.09005 * 109.87214 * 175.85004 * 16 15 14 44 44 H 0.96991 * 120.00430 * 5.79486 * 21 20 18 45 45 H 1.09002 * 109.58195 * 257.04781 * 26 17 16 46 46 H 1.08996 * 109.58328 * 17.31553 * 26 17 16 47 47 H 1.09005 * 109.58151 * 187.27454 * 27 9 7 48 48 H 1.08998 * 109.58414 * 66.85902 * 27 9 7 49 49 H 1.09009 * 109.87876 * 117.39355 * 28 5 4 50 50 H 1.09003 * 109.87919 * 238.39243 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0791 -0.7887 1.2161 5 6 3.4831 -1.2129 0.7203 6 1 4.2450 -0.5296 1.0955 7 6 3.7880 -2.6261 1.1458 8 8 3.0033 -3.2316 1.8445 9 7 4.9328 -3.2168 0.7497 10 6 5.9147 -2.5129 -0.1012 11 6 6.8625 -1.7152 0.7966 12 6 7.5351 -2.6469 1.7716 13 8 8.3236 -3.4812 1.3802 14 7 7.2459 -2.5392 3.0972 15 6 7.9424 -3.4742 4.0034 16 6 6.9671 -4.5861 4.4171 17 7 6.4454 -5.2312 3.1945 18 6 7.1132 -6.2587 2.5834 19 1 7.0465 -6.3852 1.5130 20 6 7.8761 -7.1378 3.3399 21 7 7.5549 -7.3767 4.5938 22 14 9.3584 -7.9817 2.5783 23 1 10.3339 -6.9570 2.1272 24 1 9.9978 -8.8644 3.5869 25 1 8.9215 -8.7952 1.4153 26 6 5.1646 -4.7168 2.6673 27 6 5.2687 -4.6001 1.1458 28 6 3.3852 -1.1210 -0.8148 29 8 2.0385 -0.7336 -1.1348 30 1 -0.3633 -1.0273 0.0256 31 1 -0.3634 0.5359 0.8769 32 1 -0.3633 0.4916 -0.9025 33 1 1.4604 -1.6615 1.4252 34 1 2.1540 -0.1473 2.0941 35 1 6.4847 -3.2400 -0.6794 36 1 5.3931 -1.8343 -0.7760 37 1 7.6179 -1.2249 0.1826 38 1 6.2960 -0.9627 1.3453 39 1 6.6150 -1.8817 3.4297 40 1 8.7984 -3.9114 3.4894 41 1 8.2831 -2.9384 4.8893 42 1 6.1414 -4.1559 4.9838 43 1 7.4856 -5.3255 5.0275 44 1 6.7392 -7.0055 4.9647 45 1 4.3600 -5.4049 2.9268 46 1 4.9597 -3.7365 3.0976 47 1 6.2855 -4.8338 0.8299 48 1 4.5701 -5.2939 0.6781 49 1 4.0845 -0.3721 -1.1867 50 1 3.6098 -2.0907 -1.2592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070976666.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:22 Heat of formation + Delta-G solvation = -72.301009 kcal Electronic energy + Delta-G solvation = -32878.773683 eV Core-core repulsion = 28714.561785 eV Total energy + Delta-G solvation = -4164.211898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.81006 -39.35898 -38.42220 -36.12727 -35.76262 -33.68196 -32.66033 -32.25898 -31.56926 -30.36360 -29.31688 -26.76143 -26.14953 -25.02979 -23.72273 -23.20297 -21.86626 -21.27812 -20.19286 -19.89090 -18.90776 -17.34364 -17.15021 -17.01234 -16.51896 -16.14503 -15.65048 -15.40820 -15.22015 -14.90899 -14.32884 -14.24470 -13.86042 -13.63551 -13.45882 -13.35155 -13.30852 -12.95964 -12.79974 -12.58420 -12.52222 -12.37545 -12.09027 -11.86032 -11.69979 -11.47359 -11.32363 -11.23558 -11.21351 -11.06076 -10.65670 -10.60522 -10.34913 -10.25199 -10.05647 -9.96691 -9.55751 -9.31219 -9.17035 -8.67417 -8.39749 -8.20590 -6.69369 -5.93192 -3.16475 2.65795 2.97390 3.19499 3.52622 3.57533 3.64496 3.78333 3.80668 4.11317 4.29143 4.56903 4.67413 4.70002 4.73941 4.82091 4.87947 5.02746 5.10127 5.16393 5.19683 5.25195 5.31106 5.39198 5.44384 5.53587 5.55769 5.58768 5.66355 5.68157 5.83233 5.87316 5.98525 5.99705 6.11663 6.23808 6.29593 6.39218 6.40455 6.60482 6.81345 6.85280 6.92406 7.02043 7.28609 7.58425 8.03233 8.10056 8.27821 8.64052 8.83480 9.14939 9.89779 10.39112 11.27331 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.003585 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.238290 B = 7808.465912 C = 8067.033811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 H 0.070 0.930 4 C -0.135 4.135 5 C -0.147 4.147 6 H 0.106 0.894 7 C 0.523 3.477 8 O -0.528 6.528 9 N -0.611 5.611 10 C 0.110 3.890 11 C -0.162 4.162 12 C 0.517 3.483 13 O -0.513 6.513 14 N -0.725 5.725 15 C 0.092 3.908 16 C 0.115 3.885 17 N -0.586 5.586 18 C -0.320 4.320 19 H 0.052 0.948 20 C -0.024 4.024 21 N -0.910 5.910 22 Si 1.056 2.944 23 H -0.292 1.292 24 H -0.289 1.289 25 H -0.295 1.295 26 C 0.147 3.853 27 C 0.100 3.900 28 C 0.058 3.942 29 O -0.371 6.371 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.390 0.610 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.028 0.972 43 H 0.087 0.913 44 H 0.266 0.734 45 H 0.020 0.980 46 H 0.048 0.952 47 H 0.110 0.890 48 H 0.053 0.947 49 H 0.069 0.931 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.483 19.494 -7.954 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.088 0.912 4 C -0.173 4.173 5 C -0.169 4.169 6 H 0.124 0.876 7 C 0.310 3.690 8 O -0.404 6.404 9 N -0.345 5.345 10 C -0.014 4.014 11 C -0.203 4.203 12 C 0.302 3.698 13 O -0.388 6.388 14 N -0.378 5.378 15 C -0.034 4.034 16 C -0.013 4.013 17 N -0.310 5.310 18 C -0.449 4.449 19 H 0.069 0.931 20 C -0.225 4.225 21 N -0.551 5.551 22 Si 0.887 3.113 23 H -0.219 1.219 24 H -0.215 1.215 25 H -0.222 1.222 26 C 0.021 3.979 27 C -0.022 4.022 28 C -0.020 4.020 29 O -0.291 6.291 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.223 0.777 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.105 0.895 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.128 0.872 48 H 0.071 0.929 49 H 0.087 0.913 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.179 17.448 -7.755 20.069 hybrid contribution -1.351 1.519 -0.029 2.033 sum -7.530 18.967 -7.784 21.841 Atomic orbital electron populations 1.21766 0.92936 1.03261 1.02394 1.23183 0.95530 0.95071 0.84862 0.91197 1.23166 0.94283 1.01740 0.98100 1.22766 1.00472 0.95998 0.97621 0.87563 1.20048 0.80906 0.87663 0.80376 1.90714 1.47225 1.65106 1.37332 1.48881 1.18841 1.15962 1.50790 1.21948 0.90194 0.96994 0.92271 1.22232 1.00358 0.98677 0.99062 1.20396 0.82116 0.84123 0.83188 1.90766 1.34912 1.35405 1.77678 1.46399 1.46267 1.37852 1.07255 1.22452 0.98017 0.91139 0.91809 1.21745 0.95031 0.93976 0.90524 1.44441 1.19554 1.37313 1.29713 1.19593 1.28218 1.05434 0.91666 0.93056 1.25659 1.03941 0.96081 0.96865 1.70801 1.26478 1.41484 1.16353 0.83651 0.76972 0.75855 0.74841 1.21915 1.21486 1.22241 1.21303 0.88763 0.96751 0.91113 1.22661 1.02234 0.78929 0.98391 1.23223 0.85142 1.01071 0.92527 1.88913 1.27316 1.73771 1.39065 0.91547 0.90998 0.91837 0.88293 0.89845 0.88701 0.89674 0.87907 0.90785 0.77655 0.88931 0.93217 0.95328 0.89499 0.92275 0.96232 0.93333 0.87210 0.92852 0.91325 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 37.16 0.36 -0.79 16 2 C 0.07 0.63 3.97 -25.68 -0.10 0.53 16 3 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 4 C -0.14 -1.35 5.94 -24.72 -0.15 -1.49 16 5 C -0.15 -1.49 2.77 -90.24 -0.25 -1.74 16 6 H 0.11 0.83 7.05 -51.93 -0.37 0.46 16 7 C 0.52 7.58 6.27 -10.98 -0.07 7.51 16 8 O -0.53 -9.79 14.10 5.56 0.08 -9.71 16 9 N -0.61 -8.90 2.38 -171.67 -0.41 -9.31 16 10 C 0.11 1.23 5.20 -3.35 -0.02 1.21 16 11 C -0.16 -1.77 6.16 -27.88 -0.17 -1.94 16 12 C 0.52 8.49 4.81 -10.38 -0.05 8.44 16 13 O -0.51 -10.98 15.58 5.55 0.09 -10.89 16 14 N -0.73 -11.44 4.33 -58.85 -0.25 -11.70 16 15 C 0.09 1.74 6.65 -3.11 -0.02 1.72 16 16 C 0.11 2.54 5.38 -3.06 -0.02 2.52 16 17 N -0.59 -14.11 2.11 -170.88 -0.36 -14.47 16 18 C -0.32 -8.73 8.79 -15.06 -0.13 -8.87 16 19 H 0.05 1.45 6.51 -52.49 -0.34 1.11 16 20 C -0.02 -0.67 4.92 -17.43 -0.09 -0.76 16 21 N -0.91 -26.99 12.20 55.49 0.68 -26.31 16 22 Si 1.06 26.11 30.00 -169.99 -5.10 21.01 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.15 3.19 4.45 -3.38 -0.02 3.17 16 27 C 0.10 1.92 4.82 -3.38 -0.02 1.90 16 28 C 0.06 0.54 5.46 37.73 0.21 0.75 16 29 O -0.37 -4.20 11.22 -35.23 -0.40 -4.59 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 1.25 6.84 -51.92 -0.36 0.89 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.17 7.76 -51.93 -0.40 0.77 16 36 H 0.09 0.68 4.44 -51.93 -0.23 0.45 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.63 6.86 -51.93 -0.36 0.28 16 39 H 0.39 5.06 8.74 -40.82 -0.36 4.71 16 40 H 0.09 2.10 6.85 -51.93 -0.36 1.75 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.59 7.85 -51.93 -0.41 0.18 16 43 H 0.09 2.21 5.29 -51.93 -0.27 1.94 16 44 H 0.27 7.98 7.08 -40.82 -0.29 7.69 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.05 1.00 5.91 -51.93 -0.31 0.69 16 47 H 0.11 2.37 4.53 -51.93 -0.24 2.13 16 48 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.07 0.47 7.79 -51.92 -0.40 0.07 16 50 H 0.09 0.92 6.73 -51.93 -0.35 0.57 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -34.35 372.01 -8.23 -42.58 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.63 Total: 5.61 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -0.53 Total: 12.17 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.35 Total: -61.78 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.23 Total: -25.19 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.10 Total: 21.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.35 -8.23 -42.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070976666.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.718 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds