Wall clock time and date at job start Sat Apr 11 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.55386 * 2 1 4 4 C 1.54998 * 110.74994 * 122.96617 * 2 1 3 5 5 C 1.54812 * 102.09076 * 155.58846 * 4 2 1 6 6 H 1.09003 * 110.60343 * 97.85186 * 5 4 2 7 7 C 1.50705 * 110.48893 * 220.44748 * 5 4 2 8 8 O 1.21273 * 119.99891 * 356.22122 * 7 5 4 9 9 N 1.34774 * 119.99624 * 176.22079 * 7 5 4 10 10 C 1.47766 * 121.65684 * 0.02562 * 9 7 5 11 11 C 1.52999 * 108.79268 * 86.88211 * 10 9 7 12 12 C 1.50699 * 109.49525 * 57.61200 * 11 10 9 13 13 O 1.21286 * 120.44590 * 67.24498 * 12 11 10 14 14 N 1.36104 * 119.10220 * 247.22642 * 12 11 10 15 15 C 1.47661 * 116.57791 * 180.35593 * 14 12 11 16 16 C 1.53578 * 108.91747 * 256.67785 * 15 14 12 17 17 N 1.47748 * 108.50591 * 56.06517 * 16 15 14 18 18 C 1.36941 * 121.64890 * 86.22418 * 17 16 15 19 19 H 1.07995 * 120.00364 * 211.17094 * 18 17 16 20 20 C 1.38817 * 119.99917 * 31.16650 * 18 17 16 21 21 N 1.31626 * 119.99774 * 28.69682 * 20 18 17 22 22 Si 1.86796 * 119.99961 * 208.69564 * 20 18 17 23 23 H 1.48498 * 109.47368 * 60.00055 * 22 20 18 24 24 H 1.48505 * 109.47167 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47172 * 299.99860 * 22 20 18 26 26 C 1.47753 * 116.69899 * 265.95472 * 17 16 15 27 27 C 1.47755 * 121.64734 * 179.97438 * 9 7 5 28 28 C 1.54100 * 104.18690 * 339.12219 * 5 4 2 29 29 O 1.43738 * 107.29698 * 357.96932 * 28 5 4 30 30 H 1.08992 * 109.47179 * 181.42614 * 1 2 3 31 31 H 1.09005 * 109.47403 * 301.43229 * 1 2 3 32 32 H 1.09002 * 109.46666 * 61.42550 * 1 2 3 33 33 H 1.09008 * 110.90527 * 37.39701 * 4 2 1 34 34 H 1.08994 * 110.91198 * 273.78927 * 4 2 1 35 35 H 1.08994 * 109.58511 * 206.67551 * 10 9 7 36 36 H 1.08998 * 109.58034 * 327.09168 * 10 9 7 37 37 H 1.08997 * 109.47069 * 177.62261 * 11 10 9 38 38 H 1.09006 * 109.46713 * 297.61518 * 11 10 9 39 39 H 0.96999 * 121.71237 * 0.32587 * 14 12 11 40 40 H 1.08999 * 109.57231 * 16.55244 * 15 14 12 41 41 H 1.08998 * 109.57255 * 136.79468 * 15 14 12 42 42 H 1.08993 * 109.59755 * 296.44464 * 16 15 14 43 43 H 1.09005 * 109.87214 * 175.85004 * 16 15 14 44 44 H 0.96991 * 120.00430 * 5.79486 * 21 20 18 45 45 H 1.09002 * 109.58195 * 257.04781 * 26 17 16 46 46 H 1.08996 * 109.58328 * 17.31553 * 26 17 16 47 47 H 1.09005 * 109.58151 * 187.27454 * 27 9 7 48 48 H 1.08998 * 109.58414 * 66.85902 * 27 9 7 49 49 H 1.09009 * 109.87876 * 117.39355 * 28 5 4 50 50 H 1.09003 * 109.87919 * 238.39243 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0791 -0.7887 1.2161 5 6 3.4831 -1.2129 0.7203 6 1 4.2450 -0.5296 1.0955 7 6 3.7880 -2.6261 1.1458 8 8 3.0033 -3.2316 1.8445 9 7 4.9328 -3.2168 0.7497 10 6 5.9147 -2.5129 -0.1012 11 6 6.8625 -1.7152 0.7966 12 6 7.5351 -2.6469 1.7716 13 8 8.3236 -3.4812 1.3802 14 7 7.2459 -2.5392 3.0972 15 6 7.9424 -3.4742 4.0034 16 6 6.9671 -4.5861 4.4171 17 7 6.4454 -5.2312 3.1945 18 6 7.1132 -6.2587 2.5834 19 1 7.0465 -6.3852 1.5130 20 6 7.8761 -7.1378 3.3399 21 7 7.5549 -7.3767 4.5938 22 14 9.3584 -7.9817 2.5783 23 1 10.3339 -6.9570 2.1272 24 1 9.9978 -8.8644 3.5869 25 1 8.9215 -8.7952 1.4153 26 6 5.1646 -4.7168 2.6673 27 6 5.2687 -4.6001 1.1458 28 6 3.3852 -1.1210 -0.8148 29 8 2.0385 -0.7336 -1.1348 30 1 -0.3633 -1.0273 0.0256 31 1 -0.3634 0.5359 0.8769 32 1 -0.3633 0.4916 -0.9025 33 1 1.4604 -1.6615 1.4252 34 1 2.1540 -0.1473 2.0941 35 1 6.4847 -3.2400 -0.6794 36 1 5.3931 -1.8343 -0.7760 37 1 7.6179 -1.2249 0.1826 38 1 6.2960 -0.9627 1.3453 39 1 6.6150 -1.8817 3.4297 40 1 8.7984 -3.9114 3.4894 41 1 8.2831 -2.9384 4.8893 42 1 6.1414 -4.1559 4.9838 43 1 7.4856 -5.3255 5.0275 44 1 6.7392 -7.0055 4.9647 45 1 4.3600 -5.4049 2.9268 46 1 4.9597 -3.7365 3.0976 47 1 6.2855 -4.8338 0.8299 48 1 4.5701 -5.2939 0.6781 49 1 4.0845 -0.3721 -1.1867 50 1 3.6098 -2.0907 -1.2592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070976666.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:21 Heat of formation + Delta-G solvation = -97.774994 kcal Electronic energy + Delta-G solvation = -32879.878318 eV Core-core repulsion = 28714.561785 eV Total energy + Delta-G solvation = -4165.316533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.85538 -40.53661 -39.51348 -37.93183 -37.01154 -35.20281 -33.96776 -33.21597 -32.68765 -31.76793 -30.85448 -28.24136 -27.09533 -26.55769 -25.13907 -24.48077 -22.96925 -22.08235 -22.06334 -21.24526 -20.02155 -19.09755 -18.43158 -17.88936 -17.60793 -17.30317 -16.81608 -16.63738 -16.57804 -16.20062 -15.63975 -15.50456 -15.42950 -15.11627 -15.05252 -14.66322 -14.46392 -14.25332 -14.03557 -13.82147 -13.46891 -13.27984 -13.20933 -13.12028 -12.88110 -12.75390 -12.61529 -12.48741 -12.32474 -12.19411 -12.11991 -12.05786 -12.00435 -11.95234 -11.77244 -11.38204 -10.96531 -10.58114 -10.51532 -10.40804 -9.96490 -9.77479 -8.76342 -8.10300 -5.34717 1.54305 1.55096 1.62959 1.78571 1.81927 1.94744 2.54818 2.65475 2.85499 3.19922 3.28133 3.44487 3.56819 3.81397 3.89531 3.94756 4.01799 4.13170 4.18199 4.25631 4.29538 4.33739 4.37622 4.45694 4.49432 4.54880 4.56028 4.62320 4.65676 4.71596 4.72477 4.82393 4.87214 4.88978 4.92094 5.01916 5.05921 5.18518 5.20138 5.28044 5.30331 5.40704 5.68248 5.89964 5.95173 6.42050 6.43595 6.83198 7.04922 7.12745 7.59549 7.78406 8.28503 9.03530 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.003585 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.238290 B = 7808.465912 C = 8067.033811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 H 0.101 0.899 4 C -0.137 4.137 5 C -0.136 4.136 6 H 0.148 0.852 7 C 0.519 3.481 8 O -0.577 6.577 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.150 4.150 12 C 0.507 3.493 13 O -0.569 6.569 14 N -0.716 5.716 15 C 0.106 3.894 16 C 0.115 3.885 17 N -0.595 5.595 18 C -0.310 4.310 19 H 0.037 0.963 20 C -0.073 4.073 21 N -0.934 5.934 22 Si 1.101 2.899 23 H -0.291 1.291 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.159 3.841 27 C 0.117 3.883 28 C 0.054 3.946 29 O -0.397 6.397 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.112 0.888 39 H 0.409 0.591 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.054 0.946 44 H 0.252 0.748 45 H -0.020 1.020 46 H 0.062 0.938 47 H 0.089 0.911 48 H 0.035 0.965 49 H 0.111 0.889 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 23.881 -9.403 26.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 H 0.118 0.882 4 C -0.175 4.175 5 C -0.157 4.157 6 H 0.166 0.834 7 C 0.309 3.691 8 O -0.456 6.456 9 N -0.341 5.341 10 C -0.014 4.014 11 C -0.191 4.191 12 C 0.294 3.706 13 O -0.447 6.447 14 N -0.370 5.370 15 C -0.020 4.020 16 C -0.012 4.012 17 N -0.319 5.319 18 C -0.440 4.440 19 H 0.055 0.945 20 C -0.270 4.270 21 N -0.577 5.577 22 Si 0.928 3.072 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.033 3.967 27 C -0.007 4.007 28 C -0.023 4.023 29 O -0.317 6.317 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.130 0.870 39 H 0.245 0.755 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.062 0.938 45 H -0.002 1.002 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.053 0.947 49 H 0.129 0.871 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.085 21.910 -9.226 24.539 hybrid contribution -1.503 0.182 0.422 1.572 sum -7.588 22.091 -8.804 24.962 Atomic orbital electron populations 1.21810 0.92885 1.02284 1.03577 1.23357 0.95772 0.95939 0.83413 0.88174 1.23171 0.93736 1.00966 0.99646 1.22845 1.01623 0.92759 0.98477 0.83434 1.20959 0.79699 0.89279 0.79174 1.90709 1.48598 1.66705 1.39579 1.48843 1.19958 1.14104 1.51189 1.22217 0.89746 0.97229 0.92240 1.22272 1.00908 0.97829 0.98057 1.21460 0.81292 0.84070 0.83729 1.90752 1.37399 1.38046 1.78482 1.46298 1.46294 1.37295 1.07065 1.22004 0.95869 0.91046 0.93118 1.21743 0.95835 0.94243 0.89371 1.44573 1.20195 1.37135 1.30020 1.19636 1.27641 1.05655 0.91100 0.94534 1.26702 1.06116 0.97195 0.96992 1.70906 1.26312 1.43218 1.17232 0.83014 0.74527 0.75175 0.74482 1.21766 1.21719 1.20816 1.21215 0.86465 0.96066 0.92932 1.22059 1.00376 0.82093 0.96182 1.23389 0.85427 1.01876 0.91582 1.88898 1.28372 1.74401 1.40075 0.93675 0.89178 0.91269 0.91879 0.87706 0.90172 0.85152 0.84773 0.86977 0.75459 0.92779 0.89763 0.94052 0.92844 0.93835 1.00233 0.91918 0.89321 0.94676 0.87106 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 71.98 0.70 -1.33 16 2 C 0.07 1.02 3.97 31.28 0.12 1.15 16 3 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 4 C -0.14 -2.32 5.94 31.90 0.19 -2.13 16 5 C -0.14 -2.16 2.77 -10.55 -0.03 -2.19 16 6 H 0.15 1.19 7.05 -2.39 -0.02 1.17 16 7 C 0.52 14.06 6.27 87.66 0.55 14.61 16 8 O -0.58 -21.51 14.10 -3.01 -0.04 -21.56 16 9 N -0.61 -16.75 2.38 -815.44 -1.94 -18.69 16 10 C 0.11 2.03 5.20 86.14 0.45 2.47 16 11 C -0.15 -2.54 6.16 29.85 0.18 -2.36 16 12 C 0.51 15.57 4.81 87.45 0.42 15.99 16 13 O -0.57 -24.21 15.58 -3.05 -0.05 -24.26 16 14 N -0.72 -21.00 4.33 -457.72 -1.98 -22.99 16 15 C 0.11 3.99 6.65 86.35 0.57 4.57 16 16 C 0.11 5.21 5.38 86.33 0.46 5.68 16 17 N -0.60 -29.70 2.11 -694.56 -1.47 -31.17 16 18 C -0.31 -17.63 8.79 84.03 0.74 -16.89 16 19 H 0.04 2.17 6.51 -2.91 -0.02 2.16 16 20 C -0.07 -4.29 4.92 84.86 0.42 -3.87 16 21 N -0.93 -57.61 12.20 21.65 0.26 -57.35 16 22 Si 1.10 54.53 30.00 68.60 2.06 56.59 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 26 C 0.16 7.14 4.45 86.13 0.38 7.53 16 27 C 0.12 4.62 4.82 86.12 0.42 5.04 16 28 C 0.05 0.77 5.46 72.35 0.39 1.17 16 29 O -0.40 -7.68 11.22 -148.98 -1.67 -9.35 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.56 6.84 -2.38 -0.02 1.54 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.82 7.76 -2.39 -0.02 1.80 16 36 H 0.13 1.34 4.44 -2.39 -0.01 1.33 16 37 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 1.09 6.86 -2.38 -0.02 1.08 16 39 H 0.41 9.04 8.74 -92.71 -0.81 8.23 16 40 H 0.05 2.50 6.85 -2.39 -0.02 2.48 16 41 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.04 1.73 7.85 -2.39 -0.02 1.71 16 43 H 0.05 2.84 5.29 -2.38 -0.01 2.83 16 44 H 0.25 15.85 7.08 -92.72 -0.66 15.20 16 45 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 46 H 0.06 2.59 5.91 -2.39 -0.01 2.58 16 47 H 0.09 3.96 4.53 -2.38 -0.01 3.95 16 48 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.11 0.72 7.79 -2.38 -0.02 0.70 16 50 H 0.08 1.29 6.73 -2.39 -0.02 1.28 16 Total: -1.00 -83.34 372.01 1.41 -81.93 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.27 Total: 17.42 kcal Atomic # 6 Polarization: 23.44 SS G_CDS: 5.97 Total: 29.41 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -5.13 Total: -130.20 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -1.76 Total: -55.16 kcal Atomic # 14 Polarization: 54.53 SS G_CDS: 2.06 Total: 56.59 kcal Total: -83.34 1.41 -81.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070976666.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.845 kcal (2) G-P(sol) polarization free energy of solvation -83.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds