Wall clock time and date at job start Sat Apr 11 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.56334 * 2 1 4 4 C 1.54480 * 110.51062 * 122.67929 * 2 1 3 5 5 O 1.44520 * 104.88073 * 142.54880 * 4 2 1 6 6 C 1.44428 * 105.22349 * 319.64705 * 5 4 2 7 7 H 1.08999 * 110.36505 * 281.47146 * 6 5 4 8 8 C 1.50700 * 110.37274 * 159.24795 * 6 5 4 9 9 O 1.21288 * 119.99759 * 1.77465 * 8 6 5 10 10 N 1.34776 * 120.00080 * 181.77191 * 8 6 5 11 11 C 1.47745 * 121.64967 * 182.15887 * 10 8 6 12 12 C 1.52988 * 108.84537 * 88.41838 * 11 10 8 13 13 C 1.50705 * 109.45599 * 54.68150 * 12 11 10 14 14 O 1.21279 * 120.27690 * 65.27309 * 13 12 11 15 15 N 1.35527 * 119.44652 * 245.25129 * 13 12 11 16 16 C 1.47110 * 118.12294 * 180.24288 * 15 13 12 17 17 C 1.53002 * 109.16775 * 259.72576 * 16 15 13 18 18 N 1.47768 * 108.78022 * 57.75021 * 17 16 15 19 19 C 1.36929 * 121.65630 * 83.28820 * 18 17 16 20 20 H 1.08004 * 120.00175 * 330.38736 * 19 18 17 21 21 C 1.38814 * 120.00311 * 150.38323 * 19 18 17 22 22 N 1.31622 * 119.99806 * 348.51413 * 21 19 18 23 23 Si 1.86796 * 120.00193 * 168.50911 * 21 19 18 24 24 H 1.48498 * 109.47466 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46990 * 120.00352 * 23 21 19 26 26 H 1.48502 * 109.47560 * 240.00157 * 23 21 19 27 27 C 1.47736 * 116.69024 * 263.26799 * 18 17 16 28 28 C 1.47755 * 121.64908 * 2.13685 * 10 8 6 29 29 C 1.54472 * 104.90147 * 40.36007 * 6 5 4 30 30 H 1.09002 * 109.47408 * 182.67536 * 1 2 3 31 31 H 1.08995 * 109.47664 * 302.68220 * 1 2 3 32 32 H 1.09008 * 109.47015 * 62.67610 * 1 2 3 33 33 H 1.09000 * 110.37313 * 261.45661 * 4 2 1 34 34 H 1.08997 * 110.37206 * 23.79122 * 4 2 1 35 35 H 1.09006 * 109.57457 * 328.60505 * 11 10 8 36 36 H 1.09011 * 109.67734 * 208.29250 * 11 10 8 37 37 H 1.08997 * 109.47266 * 294.68188 * 12 11 10 38 38 H 1.09001 * 109.47832 * 174.67723 * 12 11 10 39 39 H 0.96998 * 120.94360 * 0.26298 * 15 13 12 40 40 H 1.08992 * 109.52208 * 139.81333 * 16 15 13 41 41 H 1.09004 * 109.56785 * 19.65842 * 16 15 13 42 42 H 1.08994 * 109.58313 * 297.95984 * 17 16 15 43 43 H 1.09000 * 109.58017 * 177.53802 * 17 16 15 44 44 H 0.97000 * 119.99639 * 179.97438 * 22 21 19 45 45 H 1.09009 * 109.57779 * 254.41078 * 27 18 17 46 46 H 1.08994 * 109.57996 * 14.79794 * 27 18 17 47 47 H 1.09000 * 109.57754 * 190.12585 * 28 10 8 48 48 H 1.08999 * 109.57569 * 69.74247 * 28 10 8 49 49 H 1.08999 * 110.51237 * 94.72746 * 29 6 5 50 50 H 1.09010 * 110.51101 * 217.43344 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0712 -0.7812 1.2178 5 8 3.2398 -1.4740 0.7248 6 6 2.8757 -1.9422 -0.5921 7 1 2.2569 -2.8365 -0.5191 8 6 4.1105 -2.2249 -1.4083 9 8 5.2094 -2.0795 -0.9159 10 7 3.9938 -2.6394 -2.6855 11 6 5.1781 -2.9720 -3.5039 12 6 5.5249 -4.4473 -3.2945 13 6 4.3144 -5.2946 -3.5910 14 8 3.8626 -5.3432 -4.7154 15 7 3.7351 -6.0021 -2.5907 16 6 2.5583 -6.8236 -2.9137 17 6 1.2923 -6.0764 -2.4896 18 7 1.2566 -4.7706 -3.1804 19 6 0.7785 -4.6461 -4.4575 20 1 0.8624 -5.4719 -5.1485 21 6 0.1860 -3.4585 -4.8641 22 7 -0.1221 -2.5385 -3.9747 23 14 -0.1741 -3.1659 -6.6735 24 1 0.2643 -4.3451 -7.4625 25 1 -1.6327 -2.9599 -6.8610 26 1 0.5594 -1.9602 -7.1357 27 6 1.7618 -3.6061 -2.4247 28 6 2.6752 -2.7842 -3.3362 29 6 2.0714 -0.7813 -1.2180 30 1 -0.3634 -1.0265 0.0480 31 1 -0.3634 0.5549 0.8649 32 1 -0.3633 0.4718 -0.9131 33 1 2.3464 -0.0939 2.0178 34 1 1.3285 -1.4969 1.5701 35 1 6.0201 -2.3516 -3.1968 36 1 4.9583 -2.7943 -4.5567 37 1 5.8345 -4.6047 -2.2613 38 1 6.3378 -4.7281 -3.9641 39 1 4.0863 -5.9675 -1.6872 40 1 2.6181 -7.7716 -2.3793 41 1 2.5279 -7.0117 -3.9870 42 1 1.3049 -5.9191 -1.4112 43 1 0.4140 -6.6600 -2.7656 44 1 -0.5359 -1.7085 -4.2589 45 1 0.9233 -2.9912 -2.0975 46 1 2.3252 -3.9500 -1.5573 47 1 2.7935 -3.2954 -4.2915 48 1 2.2381 -1.7990 -3.4988 49 1 2.7220 -0.1471 -1.8202 50 1 1.2490 -1.1676 -1.8203 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070980911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:33 Heat of formation + Delta-G solvation = -67.602084 kcal Electronic energy + Delta-G solvation = -33987.490826 eV Core-core repulsion = 29823.482689 eV Total energy + Delta-G solvation = -4164.008137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.41911 -39.17796 -38.02369 -36.24700 -35.23567 -33.72341 -33.29743 -31.93433 -30.97829 -29.51302 -28.86480 -26.64716 -26.09462 -24.95096 -23.83512 -23.29236 -21.64340 -20.44811 -20.21915 -19.83699 -18.85999 -17.11745 -16.68193 -16.51854 -15.94211 -15.78135 -15.35010 -15.03968 -14.81932 -14.60860 -14.47227 -13.86478 -13.81994 -13.62074 -13.30152 -13.22245 -12.93200 -12.84139 -12.70622 -12.49641 -12.30183 -12.15409 -11.71460 -11.36854 -11.30615 -11.17608 -11.11375 -10.99687 -10.88707 -10.72782 -10.58933 -10.51859 -10.30933 -10.05126 -9.96297 -9.88186 -9.50965 -9.19190 -9.07255 -8.80005 -8.38038 -8.15865 -6.64957 -5.76618 -3.28147 2.98764 3.15020 3.33759 3.36676 3.44726 3.49727 3.85688 4.26241 4.46910 4.64457 4.88954 5.02725 5.09014 5.19001 5.26213 5.32620 5.38941 5.40080 5.49513 5.52892 5.65020 5.69242 5.76447 5.83970 5.87191 5.93844 5.99260 6.01669 6.04099 6.08537 6.11965 6.22460 6.24338 6.29462 6.36528 6.45595 6.51605 6.59939 6.73663 6.78842 7.00277 7.10617 7.27235 7.42343 7.83054 7.94298 8.08796 8.33408 8.59221 8.91310 9.15100 9.74456 10.35278 11.24684 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009707 B = 0.006563 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.914276 B = 4265.192309 C = 5705.492254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 H 0.078 0.922 4 C 0.047 3.953 5 O -0.354 6.354 6 C 0.051 3.949 7 H 0.110 0.890 8 C 0.527 3.473 9 O -0.545 6.545 10 N -0.613 5.613 11 C 0.128 3.872 12 C -0.157 4.157 13 C 0.521 3.479 14 O -0.518 6.518 15 N -0.725 5.725 16 C 0.087 3.913 17 C 0.126 3.874 18 N -0.584 5.584 19 C -0.218 4.218 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.907 5.907 23 Si 0.897 3.103 24 H -0.278 1.278 25 H -0.293 1.293 26 H -0.291 1.291 27 C 0.151 3.849 28 C 0.095 3.905 29 C -0.146 4.146 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.392 0.608 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.039 0.961 43 H 0.055 0.945 44 H 0.250 0.750 45 H 0.071 0.929 46 H 0.025 0.975 47 H 0.109 0.891 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 0.027 7.493 8.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 H 0.097 0.903 4 C -0.030 4.030 5 O -0.273 6.273 6 C -0.009 4.009 7 H 0.127 0.873 8 C 0.314 3.686 9 O -0.423 6.423 10 N -0.348 5.348 11 C 0.004 3.996 12 C -0.198 4.198 13 C 0.306 3.694 14 O -0.392 6.392 15 N -0.377 5.377 16 C -0.039 4.039 17 C -0.001 4.001 18 N -0.306 5.306 19 C -0.348 4.348 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.553 5.553 23 Si 0.728 3.272 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.218 1.218 27 C 0.026 3.974 28 C -0.027 4.027 29 C -0.184 4.184 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.225 0.775 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.127 0.873 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.727 0.198 6.993 8.443 hybrid contribution -0.236 0.359 -0.680 0.805 sum 4.491 0.558 6.313 7.768 Atomic orbital electron populations 1.21783 0.93607 1.02622 1.01777 1.22497 0.96905 0.99985 0.94833 0.90341 1.23562 0.88002 0.94960 0.96490 1.89207 1.35155 1.73756 1.29134 1.23384 0.93862 0.99724 0.83936 0.87284 1.20081 0.90113 0.76617 0.81740 1.90642 1.27878 1.52796 1.70945 1.49015 1.09202 1.65314 1.11259 1.21507 0.89176 0.92960 0.95914 1.22129 0.97469 0.96640 1.03605 1.20387 0.84291 0.79465 0.85220 1.90730 1.63917 1.62873 1.21726 1.46081 1.31602 1.48999 1.11046 1.22287 0.86896 0.92059 1.02666 1.21496 0.94883 0.88993 0.94770 1.44385 1.71289 1.01315 1.13650 1.18972 1.29197 0.99874 0.86726 0.91735 1.24989 0.98754 0.98538 0.97293 1.69917 1.45625 1.08426 1.31339 0.86270 0.77337 0.77879 0.85724 1.20310 1.21982 1.21799 1.21822 0.94931 0.89481 0.91184 1.22930 0.79118 1.01455 0.99182 1.23187 1.01225 0.95814 0.98144 0.91841 0.92978 0.91886 0.89315 0.92051 0.89804 0.89522 0.90408 0.88335 0.77534 0.92807 0.89589 0.94228 0.92683 0.93935 0.91154 0.95686 0.87255 0.91316 0.91252 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.97 37.15 0.33 -1.38 16 2 C -0.12 -1.65 3.72 -89.05 -0.33 -1.98 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.05 0.63 7.18 37.93 0.27 0.90 16 5 O -0.35 -6.19 10.92 -54.44 -0.59 -6.79 16 6 C 0.05 0.88 2.62 -27.11 -0.07 0.81 16 7 H 0.11 1.90 4.82 -51.93 -0.25 1.65 16 8 C 0.53 9.87 6.55 -10.99 -0.07 9.80 16 9 O -0.54 -11.51 16.32 -13.66 -0.22 -11.73 16 10 N -0.61 -10.94 2.44 -171.67 -0.42 -11.36 16 11 C 0.13 2.04 5.70 -3.37 -0.02 2.02 16 12 C -0.16 -2.30 6.19 -27.89 -0.17 -2.47 16 13 C 0.52 9.08 4.71 -10.64 -0.05 9.03 16 14 O -0.52 -11.12 14.94 5.56 0.08 -11.04 16 15 N -0.73 -11.23 4.67 -59.68 -0.28 -11.51 16 16 C 0.09 1.40 6.57 -3.71 -0.02 1.38 16 17 C 0.13 2.28 6.09 -3.35 -0.02 2.26 16 18 N -0.58 -12.61 2.26 -171.22 -0.39 -13.00 16 19 C -0.22 -5.40 8.33 -15.06 -0.13 -5.53 16 20 H 0.06 1.70 7.86 -52.48 -0.41 1.29 16 21 C 0.00 0.04 4.45 -17.43 -0.08 -0.03 16 22 N -0.91 -22.64 10.09 55.49 0.56 -22.08 16 23 Si 0.90 21.04 29.57 -169.99 -5.03 16.01 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.15 3.03 2.51 -3.37 -0.01 3.02 16 28 C 0.09 1.90 3.17 -3.36 -0.01 1.89 16 29 C -0.15 -2.35 4.57 -25.17 -0.12 -2.46 16 30 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.75 7.83 -51.93 -0.41 0.35 16 35 H 0.08 1.27 7.59 -51.93 -0.39 0.88 16 36 H 0.09 1.40 7.84 -51.92 -0.41 0.99 16 37 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.39 5.24 8.70 -40.82 -0.36 4.88 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 1.63 7.03 -51.93 -0.36 1.27 16 42 H 0.04 0.66 7.76 -51.93 -0.40 0.25 16 43 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 44 H 0.25 6.21 8.31 -40.82 -0.34 5.88 16 45 H 0.07 1.56 4.85 -51.92 -0.25 1.31 16 46 H 0.03 0.48 4.74 -51.93 -0.25 0.23 16 47 H 0.11 2.55 4.59 -51.93 -0.24 2.31 16 48 H 0.07 1.47 6.06 -51.93 -0.31 1.16 16 49 H 0.07 1.15 7.86 -51.93 -0.41 0.74 16 50 H 0.12 2.10 5.07 -51.92 -0.26 1.83 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -29.74 367.77 -8.88 -38.61 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -7.64 Total: 10.07 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: -0.49 Total: 17.26 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.52 Total: -57.94 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.73 Total: -29.56 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.74 -8.88 -38.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070980911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.988 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds