Wall clock time and date at job start Sat Apr 11 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.46366 * 2 1 4 4 C 1.54482 * 110.51192 * 237.39685 * 2 1 3 5 5 O 1.44423 * 104.80530 * 217.24022 * 4 2 1 6 6 C 1.44430 * 105.27185 * 40.51452 * 5 4 2 7 7 H 1.08997 * 110.37377 * 78.43308 * 6 5 4 8 8 C 1.50708 * 110.37135 * 200.65531 * 6 5 4 9 9 O 1.21289 * 119.99741 * 10.57699 * 8 6 5 10 10 N 1.34770 * 120.00211 * 190.30004 * 8 6 5 11 11 C 1.47743 * 121.65424 * 355.00248 * 10 8 6 12 12 C 1.53606 * 108.47641 * 87.80009 * 11 10 8 13 13 C 1.50701 * 109.49466 * 55.02223 * 12 11 10 14 14 O 1.21280 * 120.23931 * 65.63945 * 13 12 11 15 15 N 1.35518 * 119.51763 * 245.65455 * 13 12 11 16 16 C 1.47110 * 118.10632 * 179.97438 * 15 13 12 17 17 C 1.52984 * 109.17481 * 259.44359 * 16 15 13 18 18 N 1.47764 * 108.82658 * 57.74788 * 17 16 15 19 19 C 1.36940 * 121.64493 * 83.02974 * 18 17 16 20 20 H 1.07992 * 120.00046 * 329.36423 * 19 18 17 21 21 C 1.38815 * 119.99691 * 149.37087 * 19 18 17 22 22 N 1.31618 * 120.00145 * 350.47705 * 21 19 18 23 23 Si 1.86801 * 119.99609 * 170.48216 * 21 19 18 24 24 H 1.48496 * 109.47376 * 59.99938 * 23 21 19 25 25 H 1.48505 * 109.47031 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47240 * 299.99741 * 23 21 19 27 27 C 1.47741 * 116.70692 * 263.01063 * 18 17 16 28 28 C 1.47767 * 121.65392 * 175.28696 * 10 8 6 29 29 C 1.54480 * 104.89977 * 319.53982 * 6 5 4 30 30 H 1.09002 * 109.47754 * 181.14683 * 1 2 3 31 31 H 1.09003 * 109.46777 * 301.15187 * 1 2 3 32 32 H 1.09003 * 109.47035 * 61.14527 * 1 2 3 33 33 H 1.09000 * 110.37055 * 98.40771 * 4 2 1 34 34 H 1.08996 * 110.37196 * 336.07512 * 4 2 1 35 35 H 1.08997 * 109.59055 * 207.42984 * 11 10 8 36 36 H 1.09006 * 109.58325 * 327.84569 * 11 10 8 37 37 H 1.09005 * 109.49583 * 294.98081 * 12 11 10 38 38 H 1.09007 * 109.40391 * 175.00804 * 12 11 10 39 39 H 0.96996 * 120.94396 * 359.94892 * 15 13 12 40 40 H 1.08996 * 109.52041 * 139.52793 * 16 15 13 41 41 H 1.09012 * 109.51789 * 19.34833 * 16 15 13 42 42 H 1.09003 * 109.57796 * 297.94245 * 17 16 15 43 43 H 1.09006 * 109.57744 * 177.55418 * 17 16 15 44 44 H 0.97002 * 119.99800 * 180.02562 * 22 21 19 45 45 H 1.08995 * 109.57929 * 14.87348 * 27 18 17 46 46 H 1.09002 * 109.57861 * 254.47244 * 27 18 17 47 47 H 1.08996 * 109.58784 * 69.84091 * 28 10 8 48 48 H 1.09002 * 109.58798 * 190.25931 * 28 10 8 49 49 H 1.09000 * 110.51104 * 142.57194 * 29 6 5 50 50 H 1.09004 * 110.50950 * 265.28339 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0712 -0.7796 -1.2189 5 8 3.2417 -1.4678 -0.7267 6 6 2.8799 -1.9400 0.5895 7 1 2.2638 -2.8361 0.5150 8 6 4.1163 -2.2209 1.4042 9 8 5.2028 -1.8637 1.0004 10 7 4.0141 -2.8641 2.5841 11 6 2.7016 -3.2137 3.1654 12 6 2.2766 -4.5848 2.6186 13 6 3.3593 -5.5951 2.8977 14 8 3.6259 -5.9051 4.0395 15 7 4.0331 -6.1546 1.8635 16 6 5.0842 -7.1367 2.1714 17 6 6.4510 -6.4560 2.0775 18 7 6.4791 -5.3117 3.0120 19 6 6.7622 -5.4767 4.3416 20 1 6.4949 -6.3964 4.8406 21 6 7.3927 -4.4616 5.0481 22 7 7.8860 -3.4226 4.4081 23 14 7.5412 -4.5705 6.9070 24 1 8.3057 -5.7901 7.2720 25 1 8.2512 -3.3704 7.4179 26 1 6.1853 -4.6377 7.5088 27 6 6.1870 -3.9808 2.4409 28 6 5.2090 -3.2492 3.3634 29 6 2.0727 -0.7829 1.2187 30 1 -0.3635 -1.0274 0.0206 31 1 -0.3633 0.5316 0.8795 32 1 -0.3633 0.4960 -0.9001 33 1 2.3441 -0.0913 -2.0188 34 1 1.3294 -1.4965 -1.5707 35 1 2.7841 -3.2626 4.2512 36 1 1.9659 -2.4593 2.8866 37 1 2.1146 -4.5132 1.5431 38 1 1.3528 -4.8982 3.1051 39 1 3.8279 -5.9146 0.9464 40 1 5.0362 -7.9578 1.4563 41 1 4.9379 -7.5224 3.1805 42 1 6.6130 -6.1007 1.0599 43 1 7.2323 -7.1668 2.3469 44 1 8.3269 -2.7136 4.9018 45 1 5.7385 -4.0971 1.4543 46 1 7.1106 -3.4077 2.3593 47 1 5.6858 -2.3558 3.7667 48 1 4.9157 -3.9094 4.1797 49 1 1.2520 -1.1730 1.8207 50 1 2.7219 -0.1481 1.8217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070980912.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:38 Heat of formation + Delta-G solvation = -71.852674 kcal Electronic energy + Delta-G solvation = -33241.337396 eV Core-core repulsion = 29077.144939 eV Total energy + Delta-G solvation = -4164.192457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.46532 -39.27058 -38.13870 -35.82341 -35.40489 -33.76135 -33.69604 -31.33074 -30.72153 -30.35496 -28.78132 -26.66017 -26.37752 -24.90835 -23.64937 -23.45408 -21.75363 -20.71579 -20.17032 -19.76435 -18.87709 -17.30413 -16.64363 -16.48029 -16.07270 -15.82694 -15.49664 -15.36478 -14.83158 -14.54977 -14.48484 -14.10026 -13.81593 -13.62345 -13.32405 -13.28587 -13.18789 -13.06935 -12.74387 -12.64092 -12.28863 -12.20964 -11.83644 -11.69302 -11.43887 -11.32239 -11.22857 -11.09564 -11.02014 -10.82814 -10.73645 -10.48292 -10.21439 -9.98563 -9.93843 -9.80735 -9.63654 -9.14314 -9.04803 -8.67415 -8.28225 -8.05387 -6.44274 -5.53929 -3.10628 2.94063 3.14096 3.32362 3.47773 3.52439 3.55716 3.85359 3.98752 4.24874 4.47342 4.56648 4.61829 4.77180 4.89387 4.94665 5.00504 5.12945 5.21762 5.24905 5.31821 5.39325 5.45095 5.51226 5.52247 5.57239 5.63630 5.69458 5.74517 5.78830 5.88208 5.94372 6.06268 6.16996 6.24843 6.46265 6.60335 6.63180 6.71231 6.81394 6.96913 7.05312 7.16739 7.55381 7.81053 7.98881 8.10536 8.14330 8.52612 8.69042 8.92210 9.35470 9.94702 10.57664 11.44735 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.004294 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.564258 B = 6519.267652 C = 7002.626678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 H 0.085 0.915 4 C 0.045 3.955 5 O -0.343 6.343 6 C 0.058 3.942 7 H 0.086 0.914 8 C 0.516 3.484 9 O -0.509 6.509 10 N -0.614 5.614 11 C 0.111 3.889 12 C -0.161 4.161 13 C 0.520 3.480 14 O -0.516 6.516 15 N -0.722 5.722 16 C 0.088 3.912 17 C 0.127 3.873 18 N -0.587 5.587 19 C -0.226 4.226 20 H 0.062 0.938 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.896 3.104 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.284 1.284 27 C 0.174 3.826 28 C 0.117 3.883 29 C -0.141 4.141 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.390 0.610 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.052 0.948 44 H 0.251 0.749 45 H 0.022 0.978 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.104 0.896 49 H 0.087 0.913 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.343 2.781 -9.812 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.104 0.896 4 C -0.032 4.032 5 O -0.261 6.261 6 C -0.004 4.004 7 H 0.104 0.896 8 C 0.301 3.699 9 O -0.383 6.383 10 N -0.350 5.350 11 C -0.013 4.013 12 C -0.203 4.203 13 C 0.305 3.695 14 O -0.391 6.391 15 N -0.374 5.374 16 C -0.038 4.038 17 C -0.002 4.002 18 N -0.310 5.310 19 C -0.356 4.356 20 H 0.080 0.920 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.726 3.274 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.211 1.211 27 C 0.048 3.952 28 C -0.003 4.003 29 C -0.179 4.179 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.223 0.777 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.122 0.878 49 H 0.105 0.895 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.188 2.885 -9.229 19.721 hybrid contribution -0.358 0.205 0.674 0.790 sum -17.547 3.090 -8.555 19.764 Atomic orbital electron populations 1.21816 0.93871 1.02164 1.02189 1.22573 0.96515 1.00708 0.94692 0.89609 1.23565 0.88038 0.95069 0.96515 1.89296 1.34519 1.73584 1.28656 1.22972 0.94723 0.97834 0.84859 0.89633 1.19874 0.89812 0.78681 0.81516 1.90760 1.28344 1.49734 1.69479 1.49116 1.08292 1.57131 1.20484 1.21961 0.85676 0.93609 1.00044 1.22345 0.99091 0.96457 1.02399 1.20231 0.82293 0.81395 0.85536 1.90744 1.66365 1.61232 1.20742 1.46026 1.38078 1.45133 1.08142 1.22314 0.89855 0.89979 1.01656 1.21450 0.93711 0.91658 0.93341 1.44464 1.80541 1.01206 1.04812 1.18846 1.30128 1.02250 0.84375 0.92030 1.25121 0.98302 0.98510 0.97672 1.69989 1.40478 1.10503 1.33622 0.86461 0.77695 0.76752 0.86457 1.21081 1.21894 1.21099 1.21211 0.96763 0.86040 0.91140 1.22693 0.83058 0.99682 0.94898 1.23070 0.99836 0.96728 0.98277 0.92282 0.92131 0.92267 0.88864 0.92072 0.88917 0.90201 0.90858 0.88154 0.77687 0.92902 0.89642 0.94265 0.93002 0.93843 0.95935 0.91719 0.92195 0.87809 0.89485 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.95 37.15 0.33 -0.53 16 2 C -0.13 -1.07 3.72 -88.96 -0.33 -1.41 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.05 0.44 7.18 37.93 0.27 0.71 16 5 O -0.34 -5.09 10.93 -54.19 -0.59 -5.69 16 6 C 0.06 0.76 2.86 -27.10 -0.08 0.68 16 7 H 0.09 0.92 6.34 -51.93 -0.33 0.59 16 8 C 0.52 9.34 6.17 -10.98 -0.07 9.27 16 9 O -0.51 -11.84 15.21 -13.41 -0.20 -12.04 16 10 N -0.61 -10.86 2.42 -171.24 -0.41 -11.27 16 11 C 0.11 1.48 5.41 -3.05 -0.02 1.46 16 12 C -0.16 -1.96 6.14 -27.57 -0.17 -2.13 16 13 C 0.52 8.85 4.75 -10.65 -0.05 8.80 16 14 O -0.52 -11.16 15.07 5.56 0.08 -11.07 16 15 N -0.72 -11.38 4.70 -59.69 -0.28 -11.66 16 16 C 0.09 1.52 6.58 -3.72 -0.02 1.49 16 17 C 0.13 2.58 6.09 -3.36 -0.02 2.56 16 18 N -0.59 -14.49 2.27 -171.18 -0.39 -14.87 16 19 C -0.23 -6.17 8.34 -15.06 -0.13 -6.30 16 20 H 0.06 1.74 7.85 -52.49 -0.41 1.32 16 21 C 0.00 0.06 4.53 -17.43 -0.08 -0.02 16 22 N -0.90 -26.36 10.06 55.49 0.56 -25.80 16 23 Si 0.90 22.49 29.56 -169.99 -5.03 17.46 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.17 4.29 3.66 -3.33 -0.01 4.28 16 28 C 0.12 2.69 3.84 -3.32 -0.01 2.68 16 29 C -0.14 -1.44 5.32 -25.07 -0.13 -1.57 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 35 H 0.09 1.35 7.81 -51.93 -0.41 0.94 16 36 H 0.08 0.77 4.99 -51.93 -0.26 0.51 16 37 H 0.07 0.72 6.41 -51.93 -0.33 0.39 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.39 5.18 8.71 -40.82 -0.36 4.82 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.70 7.01 -51.92 -0.36 1.34 16 42 H 0.04 0.77 7.76 -51.93 -0.40 0.36 16 43 H 0.05 1.06 8.13 -51.93 -0.42 0.64 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.02 0.54 6.01 -51.93 -0.31 0.22 16 46 H 0.06 1.92 6.69 -51.93 -0.35 1.57 16 47 H 0.06 1.56 7.63 -51.93 -0.40 1.16 16 48 H 0.10 2.61 4.68 -51.93 -0.24 2.37 16 49 H 0.09 0.66 6.31 -51.93 -0.33 0.34 16 50 H 0.08 0.97 7.86 -51.93 -0.41 0.57 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -35.38 372.46 -8.99 -44.37 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.82 Total: 4.97 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: -0.52 Total: 19.99 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.52 Total: -63.61 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.71 Total: -28.80 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.38 -8.99 -44.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070980912.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.484 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds