Wall clock time and date at job start Sat Apr 11 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.46366 * 2 1 4 4 C 1.54482 * 110.51192 * 237.39685 * 2 1 3 5 5 O 1.44423 * 104.80530 * 217.24022 * 4 2 1 6 6 C 1.44430 * 105.27185 * 40.51452 * 5 4 2 7 7 H 1.08997 * 110.37377 * 78.43308 * 6 5 4 8 8 C 1.50708 * 110.37135 * 200.65531 * 6 5 4 9 9 O 1.21289 * 119.99741 * 10.57699 * 8 6 5 10 10 N 1.34770 * 120.00211 * 190.30004 * 8 6 5 11 11 C 1.47743 * 121.65424 * 355.00248 * 10 8 6 12 12 C 1.53606 * 108.47641 * 87.80009 * 11 10 8 13 13 C 1.50701 * 109.49466 * 55.02223 * 12 11 10 14 14 O 1.21280 * 120.23931 * 65.63945 * 13 12 11 15 15 N 1.35518 * 119.51763 * 245.65455 * 13 12 11 16 16 C 1.47110 * 118.10632 * 179.97438 * 15 13 12 17 17 C 1.52984 * 109.17481 * 259.44359 * 16 15 13 18 18 N 1.47764 * 108.82658 * 57.74788 * 17 16 15 19 19 C 1.36940 * 121.64493 * 83.02974 * 18 17 16 20 20 H 1.07992 * 120.00046 * 329.36423 * 19 18 17 21 21 C 1.38815 * 119.99691 * 149.37087 * 19 18 17 22 22 N 1.31618 * 120.00145 * 350.47705 * 21 19 18 23 23 Si 1.86801 * 119.99609 * 170.48216 * 21 19 18 24 24 H 1.48496 * 109.47376 * 59.99938 * 23 21 19 25 25 H 1.48505 * 109.47031 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47240 * 299.99741 * 23 21 19 27 27 C 1.47741 * 116.70692 * 263.01063 * 18 17 16 28 28 C 1.47767 * 121.65392 * 175.28696 * 10 8 6 29 29 C 1.54480 * 104.89977 * 319.53982 * 6 5 4 30 30 H 1.09002 * 109.47754 * 181.14683 * 1 2 3 31 31 H 1.09003 * 109.46777 * 301.15187 * 1 2 3 32 32 H 1.09003 * 109.47035 * 61.14527 * 1 2 3 33 33 H 1.09000 * 110.37055 * 98.40771 * 4 2 1 34 34 H 1.08996 * 110.37196 * 336.07512 * 4 2 1 35 35 H 1.08997 * 109.59055 * 207.42984 * 11 10 8 36 36 H 1.09006 * 109.58325 * 327.84569 * 11 10 8 37 37 H 1.09005 * 109.49583 * 294.98081 * 12 11 10 38 38 H 1.09007 * 109.40391 * 175.00804 * 12 11 10 39 39 H 0.96996 * 120.94396 * 359.94892 * 15 13 12 40 40 H 1.08996 * 109.52041 * 139.52793 * 16 15 13 41 41 H 1.09012 * 109.51789 * 19.34833 * 16 15 13 42 42 H 1.09003 * 109.57796 * 297.94245 * 17 16 15 43 43 H 1.09006 * 109.57744 * 177.55418 * 17 16 15 44 44 H 0.97002 * 119.99800 * 180.02562 * 22 21 19 45 45 H 1.08995 * 109.57929 * 14.87348 * 27 18 17 46 46 H 1.09002 * 109.57861 * 254.47244 * 27 18 17 47 47 H 1.08996 * 109.58784 * 69.84091 * 28 10 8 48 48 H 1.09002 * 109.58798 * 190.25931 * 28 10 8 49 49 H 1.09000 * 110.51104 * 142.57194 * 29 6 5 50 50 H 1.09004 * 110.50950 * 265.28339 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0712 -0.7796 -1.2189 5 8 3.2417 -1.4678 -0.7267 6 6 2.8799 -1.9400 0.5895 7 1 2.2638 -2.8361 0.5150 8 6 4.1163 -2.2209 1.4042 9 8 5.2028 -1.8637 1.0004 10 7 4.0141 -2.8641 2.5841 11 6 2.7016 -3.2137 3.1654 12 6 2.2766 -4.5848 2.6186 13 6 3.3593 -5.5951 2.8977 14 8 3.6259 -5.9051 4.0395 15 7 4.0331 -6.1546 1.8635 16 6 5.0842 -7.1367 2.1714 17 6 6.4510 -6.4560 2.0775 18 7 6.4791 -5.3117 3.0120 19 6 6.7622 -5.4767 4.3416 20 1 6.4949 -6.3964 4.8406 21 6 7.3927 -4.4616 5.0481 22 7 7.8860 -3.4226 4.4081 23 14 7.5412 -4.5705 6.9070 24 1 8.3057 -5.7901 7.2720 25 1 8.2512 -3.3704 7.4179 26 1 6.1853 -4.6377 7.5088 27 6 6.1870 -3.9808 2.4409 28 6 5.2090 -3.2492 3.3634 29 6 2.0727 -0.7829 1.2187 30 1 -0.3635 -1.0274 0.0206 31 1 -0.3633 0.5316 0.8795 32 1 -0.3633 0.4960 -0.9001 33 1 2.3441 -0.0913 -2.0188 34 1 1.3294 -1.4965 -1.5707 35 1 2.7841 -3.2626 4.2512 36 1 1.9659 -2.4593 2.8866 37 1 2.1146 -4.5132 1.5431 38 1 1.3528 -4.8982 3.1051 39 1 3.8279 -5.9146 0.9464 40 1 5.0362 -7.9578 1.4563 41 1 4.9379 -7.5224 3.1805 42 1 6.6130 -6.1007 1.0599 43 1 7.2323 -7.1668 2.3469 44 1 8.3269 -2.7136 4.9018 45 1 5.7385 -4.0971 1.4543 46 1 7.1106 -3.4077 2.3593 47 1 5.6858 -2.3558 3.7667 48 1 4.9157 -3.9094 4.1797 49 1 1.2520 -1.1730 1.8207 50 1 2.7219 -0.1481 1.8217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070980912.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:36 Heat of formation + Delta-G solvation = -98.155510 kcal Electronic energy + Delta-G solvation = -33242.477973 eV Core-core repulsion = 29077.144939 eV Total energy + Delta-G solvation = -4165.333033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.68123 -40.50316 -39.44512 -37.65202 -36.84494 -35.31684 -34.47125 -33.21450 -32.06438 -31.65634 -30.25711 -28.31228 -27.11706 -26.45470 -25.13463 -24.70356 -23.19321 -22.01913 -21.40409 -21.14951 -20.20864 -18.70632 -18.28390 -17.79931 -17.40929 -17.14434 -16.81625 -16.50134 -16.39152 -15.98999 -15.81629 -15.38221 -15.18338 -15.06791 -14.81131 -14.65239 -14.51312 -14.23842 -13.93937 -13.76131 -13.60941 -13.23848 -13.22064 -13.10774 -12.95946 -12.74652 -12.62945 -12.34743 -12.31828 -12.13743 -11.97778 -11.87708 -11.80261 -11.70452 -11.60685 -11.52121 -10.91762 -10.70157 -10.51233 -10.46505 -9.88634 -9.62172 -8.50247 -7.69011 -5.28432 1.42476 1.44310 1.51144 1.59446 1.81115 2.01183 2.52366 2.64897 3.04224 3.34703 3.37938 3.59364 3.69532 3.80656 3.92205 3.94781 4.04271 4.17087 4.27838 4.33718 4.41531 4.48704 4.56865 4.58296 4.61742 4.68497 4.72749 4.74334 4.82120 4.83468 4.85043 4.89803 4.93848 4.99079 5.05220 5.16309 5.21409 5.28806 5.29779 5.43821 5.64634 5.72369 5.78873 5.81135 5.88680 6.39747 6.58262 6.87377 7.19310 7.26549 7.65764 7.87827 8.46936 9.25831 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.004294 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.564258 B = 6519.267652 C = 7002.626678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 H 0.077 0.923 4 C 0.039 3.961 5 O -0.385 6.385 6 C 0.067 3.933 7 H 0.126 0.874 8 C 0.510 3.490 9 O -0.574 6.574 10 N -0.612 5.612 11 C 0.107 3.893 12 C -0.151 4.151 13 C 0.508 3.492 14 O -0.569 6.569 15 N -0.716 5.716 16 C 0.102 3.898 17 C 0.119 3.881 18 N -0.599 5.599 19 C -0.218 4.218 20 H 0.052 0.948 21 C -0.045 4.045 22 N -0.929 5.929 23 Si 0.949 3.051 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.284 1.284 27 C 0.197 3.803 28 C 0.144 3.856 29 C -0.140 4.140 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.406 0.594 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.242 0.758 45 H 0.030 0.970 46 H 0.007 0.993 47 H 0.016 0.984 48 H 0.084 0.916 49 H 0.125 0.875 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.819 2.115 -11.246 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.139 4.139 3 H 0.095 0.905 4 C -0.037 4.037 5 O -0.304 6.304 6 C 0.006 3.994 7 H 0.143 0.857 8 C 0.298 3.702 9 O -0.452 6.452 10 N -0.346 5.346 11 C -0.016 4.016 12 C -0.192 4.192 13 C 0.295 3.705 14 O -0.447 6.447 15 N -0.369 5.369 16 C -0.025 4.025 17 C -0.007 4.007 18 N -0.323 5.323 19 C -0.349 4.349 20 H 0.070 0.930 21 C -0.240 4.240 22 N -0.575 5.575 23 Si 0.778 3.222 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.211 1.211 27 C 0.072 3.928 28 C 0.021 3.979 29 C -0.178 4.178 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.154 0.846 39 H 0.242 0.758 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.048 0.952 46 H 0.025 0.975 47 H 0.034 0.966 48 H 0.102 0.898 49 H 0.143 0.857 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.739 2.188 -10.707 24.331 hybrid contribution 1.051 0.395 1.033 1.525 sum -20.688 2.582 -9.675 22.984 Atomic orbital electron populations 1.21799 0.91271 1.03408 1.03011 1.22544 0.98474 0.99740 0.93135 0.90498 1.23857 0.87148 0.95709 0.97007 1.89267 1.37455 1.74462 1.29239 1.23030 0.91906 1.00465 0.83967 0.85717 1.20950 0.90972 0.76973 0.81275 1.90735 1.31350 1.52174 1.70970 1.49009 1.08467 1.56889 1.20282 1.22294 0.84092 0.95935 0.99233 1.22378 0.98298 0.93474 1.05036 1.21195 0.82933 0.81522 0.84802 1.90729 1.68179 1.62927 1.22887 1.46024 1.37200 1.44602 1.09039 1.21996 0.87942 0.91002 1.01526 1.21685 0.95967 0.90393 0.92673 1.44601 1.80727 1.02276 1.04674 1.18884 1.28773 1.01527 0.85699 0.93001 1.25684 0.98839 0.98490 1.00985 1.70190 1.41863 1.11025 1.34467 0.85614 0.77403 0.76579 0.82567 1.20337 1.22274 1.21104 1.20741 0.94689 0.85680 0.91731 1.21913 0.84774 0.96839 0.94370 1.23148 1.00015 0.95596 0.99023 0.90760 0.91526 0.91380 0.88490 0.89312 0.90503 0.85354 0.87312 0.84561 0.75803 0.88392 0.92425 0.93409 0.93459 0.94825 0.95219 0.97492 0.96606 0.89754 0.85738 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.95 71.98 0.64 -0.31 16 2 C -0.12 -1.62 3.72 -9.72 -0.04 -1.66 16 3 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 4 C 0.04 0.63 7.18 72.49 0.52 1.15 16 5 O -0.39 -10.71 10.93 -130.85 -1.43 -12.14 16 6 C 0.07 1.56 2.86 30.35 0.09 1.65 16 7 H 0.13 1.93 6.34 -2.39 -0.02 1.91 16 8 C 0.51 18.27 6.17 87.66 0.54 18.81 16 9 O -0.57 -27.88 15.21 15.07 0.23 -27.65 16 10 N -0.61 -21.41 2.42 -814.08 -1.97 -23.38 16 11 C 0.11 2.51 5.41 86.34 0.47 2.98 16 12 C -0.15 -2.98 6.14 30.05 0.18 -2.80 16 13 C 0.51 16.24 4.75 87.54 0.42 16.65 16 14 O -0.57 -24.39 15.07 -3.03 -0.05 -24.44 16 15 N -0.72 -20.92 4.70 -460.73 -2.16 -23.09 16 16 C 0.10 3.35 6.58 86.26 0.57 3.92 16 17 C 0.12 4.89 6.09 86.13 0.52 5.41 16 18 N -0.60 -30.60 2.27 -695.49 -1.58 -32.18 16 19 C -0.22 -12.36 8.34 84.03 0.70 -11.66 16 20 H 0.05 3.02 7.85 -2.91 -0.02 3.00 16 21 C -0.04 -2.61 4.53 84.86 0.38 -2.23 16 22 N -0.93 -57.66 10.06 21.65 0.22 -57.44 16 23 Si 0.95 47.96 29.56 68.60 2.03 49.99 16 24 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 25 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 26 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 27 C 0.20 10.25 3.66 86.16 0.32 10.57 16 28 C 0.14 6.95 3.84 86.16 0.33 7.28 16 29 C -0.14 -2.36 5.32 31.67 0.17 -2.19 16 30 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 0.95 7.87 -2.39 -0.02 0.93 16 35 H 0.08 2.12 7.81 -2.39 -0.02 2.10 16 36 H 0.13 1.80 4.99 -2.38 -0.01 1.79 16 37 H 0.11 1.41 6.41 -2.38 -0.02 1.40 16 38 H 0.14 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.41 9.33 8.71 -92.71 -0.81 8.52 16 40 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.06 2.27 7.01 -2.38 -0.02 2.26 16 42 H 0.05 1.86 7.76 -2.39 -0.02 1.84 16 43 H 0.05 1.96 8.13 -2.38 -0.02 1.94 16 44 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 45 H 0.03 1.46 6.01 -2.39 -0.01 1.45 16 46 H 0.01 0.45 6.69 -2.39 -0.02 0.44 16 47 H 0.02 0.88 7.63 -2.39 -0.02 0.86 16 48 H 0.08 4.43 4.68 -2.39 -0.01 4.42 16 49 H 0.12 1.13 6.31 -2.39 -0.02 1.11 16 50 H 0.06 1.27 7.86 -2.38 -0.02 1.25 16 Total: -1.00 -87.52 372.46 1.26 -86.26 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.16 Total: 16.48 kcal Atomic # 6 Polarization: 41.77 SS G_CDS: 5.82 Total: 47.58 kcal Atomic # 7 Polarization: -130.59 SS G_CDS: -5.49 Total: -136.09 kcal Atomic # 8 Polarization: -62.98 SS G_CDS: -1.25 Total: -64.23 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -87.52 1.26 -86.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070980912.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.891 kcal (2) G-P(sol) polarization free energy of solvation -87.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds