Wall clock time and date at job start Sat Apr 11 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.41721 * 2 1 4 4 O 1.44426 * 110.36992 * 122.30672 * 2 1 3 5 5 C 1.44425 * 105.27332 * 159.34119 * 4 2 1 6 6 C 1.54477 * 104.80527 * 319.49014 * 5 4 2 7 7 C 1.54480 * 110.37487 * 237.68738 * 2 1 3 8 8 H 1.08998 * 110.62784 * 98.48704 * 7 2 1 9 9 C 1.50706 * 110.50833 * 335.83751 * 7 2 1 10 10 O 1.21279 * 119.99727 * 286.30416 * 9 7 2 11 11 N 1.34778 * 119.99757 * 106.30883 * 9 7 2 12 12 C 1.47740 * 121.65444 * 354.61519 * 11 9 7 13 13 C 1.53008 * 108.79806 * 87.90817 * 12 11 9 14 14 C 1.50708 * 109.44653 * 55.01626 * 13 12 11 15 15 O 1.21275 * 120.24061 * 65.68907 * 14 13 12 16 16 N 1.35511 * 119.51568 * 245.72136 * 14 13 12 17 17 C 1.47114 * 118.10625 * 179.91830 * 16 14 13 18 18 C 1.52984 * 109.17562 * 259.43623 * 17 16 14 19 19 N 1.47770 * 108.82302 * 57.74817 * 18 17 16 20 20 C 1.36932 * 121.64835 * 83.02895 * 19 18 17 21 21 H 1.07998 * 119.99828 * 327.92501 * 20 19 18 22 22 C 1.38814 * 120.00048 * 147.91532 * 20 19 18 23 23 N 1.31616 * 119.99751 * 159.50809 * 22 20 19 24 24 Si 1.86799 * 120.00076 * 339.51210 * 22 20 19 25 25 H 1.48495 * 109.46967 * 85.46991 * 24 22 20 26 26 H 1.48503 * 109.47013 * 205.47105 * 24 22 20 27 27 H 1.48503 * 109.47159 * 325.46986 * 24 22 20 28 28 C 1.47737 * 116.70524 * 263.00761 * 19 18 17 29 29 C 1.47768 * 121.64801 * 174.89297 * 11 9 7 30 30 H 1.08999 * 109.47234 * 188.19490 * 1 2 3 31 31 H 1.08998 * 109.47099 * 308.19701 * 1 2 3 32 32 H 1.09002 * 109.47061 * 68.19384 * 1 2 3 33 33 H 1.08995 * 110.36951 * 200.65359 * 5 4 2 34 34 H 1.09001 * 110.36676 * 78.32483 * 5 4 2 35 35 H 1.08997 * 110.51140 * 265.33264 * 6 5 4 36 36 H 1.09005 * 110.51122 * 142.62124 * 6 5 4 37 37 H 1.09002 * 109.58133 * 207.70613 * 12 11 9 38 38 H 1.09001 * 109.58318 * 328.11308 * 12 11 9 39 39 H 1.08994 * 109.47675 * 295.02337 * 13 12 11 40 40 H 1.09000 * 109.48071 * 175.00594 * 13 12 11 41 41 H 0.96996 * 120.94761 * 359.89508 * 16 14 13 42 42 H 1.08999 * 109.52151 * 139.52348 * 17 16 14 43 43 H 1.09002 * 109.51516 * 19.34323 * 17 16 14 44 44 H 1.09005 * 109.57643 * 297.94507 * 18 17 16 45 45 H 1.08996 * 109.68826 * 177.61516 * 18 17 16 46 46 H 0.97000 * 120.00030 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.58365 * 14.87464 * 28 19 18 48 48 H 1.09000 * 109.69584 * 254.54124 * 28 19 18 49 49 H 1.08997 * 109.58544 * 69.57063 * 29 11 9 50 50 H 1.09005 * 109.58166 * 189.84476 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0327 -0.7236 1.1444 5 6 3.3873 -1.0872 0.7996 6 6 3.3178 -1.5057 -0.6858 7 6 2.0679 -0.7741 -1.2239 8 1 2.3427 -0.0858 -2.0231 9 6 1.0444 -1.7667 -1.7123 10 8 0.8349 -2.7814 -1.0821 11 7 0.3620 -1.5266 -2.8495 12 6 0.5017 -0.2518 -3.5831 13 6 1.6704 -0.3725 -4.5632 14 6 1.4562 -1.5686 -5.4547 15 8 0.5308 -1.5884 -6.2383 16 7 2.3047 -2.6221 -5.3739 17 6 2.0656 -3.7740 -6.2571 18 6 1.3681 -4.8799 -5.4629 19 7 0.1082 -4.3450 -4.9061 20 6 -1.0401 -4.2905 -5.6500 21 1 -0.9853 -4.1320 -6.7169 22 6 -2.2746 -4.4392 -5.0329 23 7 -3.3642 -4.0002 -5.6266 24 14 -2.3894 -5.2623 -3.3600 25 1 -2.1492 -4.2554 -2.2954 26 1 -3.7425 -5.8500 -3.1893 27 1 -1.3679 -6.3360 -3.2654 28 6 0.1485 -3.8724 -3.5069 29 6 -0.5675 -2.5230 -3.4210 30 1 -0.3634 -1.0172 0.1465 31 1 -0.3633 0.6355 0.8076 32 1 -0.3633 0.3818 -0.9542 33 1 3.7240 -1.9222 1.4138 34 1 4.0524 -0.2324 0.9223 35 1 3.1955 -2.5853 -0.7730 36 1 4.2109 -1.1773 -1.2174 37 1 -0.4163 -0.0442 -4.1329 38 1 0.6981 0.5559 -2.8780 39 1 2.5998 -0.4955 -4.0072 40 1 1.7283 0.5292 -5.1728 41 1 3.0488 -2.6166 -4.7516 42 1 3.0172 -4.1442 -6.6386 43 1 1.4322 -3.4689 -7.0901 44 1 2.0156 -5.2100 -4.6504 45 1 1.1488 -5.7215 -6.1200 46 1 -4.2268 -4.1038 -5.1952 47 1 1.1850 -3.7566 -3.1901 48 1 -0.3524 -4.5934 -2.8610 49 1 -1.4442 -2.6147 -2.7799 50 1 -0.8753 -2.2061 -4.4176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071010288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:58 Heat of formation + Delta-G solvation = -61.882839 kcal Electronic energy + Delta-G solvation = -33851.274157 eV Core-core repulsion = 29687.514024 eV Total energy + Delta-G solvation = -4163.760132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.81102 -39.37248 -38.18908 -36.16467 -35.57059 -33.87969 -32.56264 -31.70738 -31.58191 -30.67203 -29.64406 -27.15487 -26.22846 -24.66544 -23.72698 -23.01826 -22.25717 -21.21442 -20.21128 -19.90067 -18.48901 -17.61863 -16.63650 -16.49684 -16.44208 -16.36979 -15.69210 -15.49188 -15.13935 -14.93932 -14.65795 -14.37730 -14.11457 -13.60005 -13.37836 -13.20697 -13.03977 -12.73041 -12.54047 -12.49945 -12.39858 -12.22714 -12.09861 -11.83954 -11.80053 -11.54369 -11.44853 -11.34693 -11.13237 -11.06543 -10.78462 -10.57332 -10.36280 -10.27388 -9.97241 -9.88374 -9.46339 -9.30153 -9.19917 -8.76769 -8.34044 -8.20323 -6.74097 -5.86202 -3.23122 2.77996 3.10994 3.27060 3.46639 3.59043 3.64232 3.71932 3.75184 4.30101 4.43276 4.60859 4.63892 4.80179 4.86297 4.89534 4.99260 5.05469 5.15017 5.17567 5.22375 5.26576 5.40135 5.43494 5.46927 5.58220 5.60343 5.67759 5.78019 5.80265 5.82058 5.90313 5.98493 6.04899 6.07933 6.14733 6.18928 6.45602 6.48360 6.60863 6.66054 6.69831 6.88322 7.04220 7.14019 7.77527 7.99605 8.07812 8.45639 8.47086 8.85798 9.04012 9.81305 10.23901 11.29778 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.005464 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.581157 B = 5123.332266 C = 5955.731721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 H 0.077 0.923 4 O -0.363 6.363 5 C 0.049 3.951 6 C -0.140 4.140 7 C -0.148 4.148 8 H 0.101 0.899 9 C 0.526 3.474 10 O -0.527 6.527 11 N -0.612 5.612 12 C 0.115 3.885 13 C -0.160 4.160 14 C 0.516 3.484 15 O -0.505 6.505 16 N -0.726 5.726 17 C 0.091 3.909 18 C 0.126 3.874 19 N -0.601 5.601 20 C -0.237 4.237 21 H 0.084 0.916 22 C 0.032 3.968 23 N -0.903 5.903 24 Si 0.872 3.128 25 H -0.276 1.276 26 H -0.308 1.308 27 H -0.281 1.281 28 C 0.138 3.862 29 C 0.094 3.906 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.389 0.611 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.039 0.961 45 H 0.060 0.940 46 H 0.260 0.740 47 H 0.052 0.948 48 H 0.023 0.977 49 H 0.057 0.943 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.914 11.298 7.245 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.094 0.906 4 O -0.282 6.282 5 C -0.028 4.028 6 C -0.178 4.178 7 C -0.169 4.169 8 H 0.119 0.881 9 C 0.314 3.686 10 O -0.403 6.403 11 N -0.346 5.346 12 C -0.009 4.009 13 C -0.202 4.202 14 C 0.300 3.700 15 O -0.378 6.378 16 N -0.378 5.378 17 C -0.035 4.035 18 C -0.002 4.002 19 N -0.326 5.326 20 C -0.365 4.365 21 H 0.101 0.899 22 C -0.168 4.168 23 N -0.546 5.546 24 Si 0.704 3.296 25 H -0.204 1.204 26 H -0.236 1.236 27 H -0.208 1.208 28 C 0.013 3.987 29 C -0.027 4.027 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.222 0.778 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.041 0.959 49 H 0.075 0.925 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.771 10.674 7.194 20.357 hybrid contribution 0.371 -0.414 1.124 1.255 sum 16.142 10.260 8.318 20.858 Atomic orbital electron populations 1.21983 0.92874 1.04301 1.02548 1.22814 0.95755 0.94479 0.83618 0.90564 1.89194 1.26991 1.74460 1.37561 1.23350 0.84712 0.99683 0.95027 1.22922 0.96030 1.02680 0.96174 1.22931 0.96041 0.98091 0.99869 0.88085 1.19963 0.81724 0.86935 0.80018 1.90730 1.66067 1.28256 1.55236 1.48987 1.44235 1.17491 1.23904 1.21777 0.99157 0.86119 0.93826 1.22247 1.00060 0.98963 0.98943 1.20290 0.82243 0.83730 0.83697 1.90816 1.28733 1.80404 1.37820 1.46043 1.31213 1.18249 1.42336 1.22226 0.99154 0.87425 0.94718 1.21523 0.88282 0.94071 0.96300 1.44795 1.07064 1.70855 1.09878 1.18620 0.81811 1.42939 0.93119 0.89880 1.25284 0.95352 0.98994 0.97128 1.69857 0.98367 1.46874 1.39463 0.87249 0.75086 0.81341 0.85952 1.20367 1.23639 1.20755 1.21456 0.97861 0.92843 0.86545 1.22833 0.90415 0.88747 1.00748 0.90631 0.91586 0.90931 0.88974 0.92356 0.89277 0.90118 0.88529 0.90118 0.90780 0.87935 0.77819 0.92636 0.89169 0.94225 0.92223 0.92977 0.92969 0.95929 0.92497 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.55 37.16 0.32 -1.66 16 2 C 0.09 1.03 3.83 -25.95 -0.10 0.93 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 4 O -0.36 -4.86 11.34 -35.23 -0.40 -5.25 16 5 C 0.05 0.49 7.63 37.93 0.29 0.78 16 6 C -0.14 -1.40 6.59 -25.17 -0.17 -1.56 16 7 C -0.15 -1.63 2.77 -90.20 -0.25 -1.88 16 8 H 0.10 0.83 5.23 -51.93 -0.27 0.56 16 9 C 0.53 8.31 3.90 -10.98 -0.04 8.27 16 10 O -0.53 -10.72 14.30 5.56 0.08 -10.64 16 11 N -0.61 -9.91 2.43 -171.64 -0.42 -10.32 16 12 C 0.12 1.42 5.09 -3.36 -0.02 1.40 16 13 C -0.16 -1.78 6.03 -27.88 -0.17 -1.95 16 14 C 0.52 8.28 4.75 -10.65 -0.05 8.22 16 15 O -0.50 -10.79 15.08 5.56 0.08 -10.71 16 16 N -0.73 -10.41 4.70 -59.69 -0.28 -10.69 16 17 C 0.09 1.45 6.58 -3.71 -0.02 1.43 16 18 C 0.13 2.36 6.09 -3.35 -0.02 2.34 16 19 N -0.60 -13.96 1.96 -171.22 -0.33 -14.30 16 20 C -0.24 -6.51 8.70 -15.06 -0.13 -6.64 16 21 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16 22 C 0.03 0.92 4.69 -17.43 -0.08 0.84 16 23 N -0.90 -27.78 13.97 55.49 0.78 -27.01 16 24 Si 0.87 23.56 23.66 -169.99 -4.02 19.54 16 25 H -0.28 -7.42 5.34 56.52 0.30 -7.11 16 26 H -0.31 -8.49 7.11 56.52 0.40 -8.09 16 27 H -0.28 -7.71 7.08 56.52 0.40 -7.31 16 28 C 0.14 3.12 3.47 -3.36 -0.01 3.11 16 29 C 0.09 2.03 3.80 -3.35 -0.01 2.02 16 30 H 0.07 1.21 6.96 -51.93 -0.36 0.85 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.82 7.17 -51.93 -0.37 0.44 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 1.11 7.20 -51.93 -0.37 0.73 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 1.35 7.81 -51.93 -0.41 0.94 16 38 H 0.08 0.70 6.15 -51.93 -0.32 0.38 16 39 H 0.07 0.62 6.87 -51.93 -0.36 0.27 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.39 4.43 8.71 -40.82 -0.36 4.08 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.74 7.01 -51.93 -0.36 1.38 16 44 H 0.04 0.68 7.76 -51.93 -0.40 0.28 16 45 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 47 H 0.05 1.09 6.03 -51.93 -0.31 0.78 16 48 H 0.02 0.60 4.03 -51.93 -0.21 0.39 16 49 H 0.06 1.39 6.06 -51.93 -0.31 1.07 16 50 H 0.13 3.10 4.72 -51.93 -0.25 2.85 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -36.49 362.63 -7.23 -43.71 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.71 Total: 4.58 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: -0.47 Total: 15.63 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.26 Total: -62.32 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.24 Total: -26.60 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.02 Total: 19.54 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.49 -7.23 -43.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071010288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.172 kcal (2) G-P(sol) polarization free energy of solvation -36.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds