Wall clock time and date at job start Sat Apr 11 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.51725 * 2 1 4 4 C 1.53283 * 109.51334 * 120.10078 * 2 1 3 5 5 N 1.47172 * 108.55730 * 172.99995 * 4 2 1 6 6 C 1.34776 * 121.07759 * 128.72845 * 5 4 2 7 7 O 1.21284 * 120.00135 * 175.77291 * 6 5 4 8 8 C 1.50701 * 119.99855 * 355.76986 * 6 5 4 9 9 C 1.53007 * 109.47140 * 62.89091 * 8 6 5 10 10 C 1.53003 * 109.46861 * 182.88835 * 8 6 5 11 11 C 1.50702 * 109.47370 * 302.88782 * 8 6 5 12 12 N 1.34775 * 119.99762 * 179.97438 * 11 8 6 13 13 O 1.21279 * 119.99521 * 0.02562 * 11 8 6 14 14 C 1.47329 * 117.84254 * 308.74984 * 5 4 2 15 15 C 1.52361 * 108.42935 * 49.15498 * 14 5 4 16 16 C 1.54371 * 110.38487 * 73.49473 * 15 14 5 17 17 C 1.54468 * 102.95590 * 152.19744 * 16 15 14 18 18 N 1.47082 * 107.28904 * 338.85339 * 17 16 15 19 19 C 1.36937 * 125.63480 * 178.88823 * 18 17 16 20 20 H 1.08001 * 120.00436 * 179.69384 * 19 18 17 21 21 C 1.38812 * 119.99856 * 359.70296 * 19 18 17 22 22 N 1.31623 * 119.99996 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00074 * 180.27353 * 21 19 18 24 24 H 1.48504 * 109.46862 * 179.72222 * 23 21 19 25 25 H 1.48501 * 109.46984 * 299.71694 * 23 21 19 26 26 H 1.48489 * 109.47320 * 59.72100 * 23 21 19 27 27 C 1.47582 * 108.73788 * 358.63109 * 18 17 16 28 28 O 1.41877 * 111.46737 * 310.00238 * 15 14 5 29 29 H 1.08990 * 109.47302 * 299.89799 * 1 2 3 30 30 H 1.09004 * 109.47012 * 59.90038 * 1 2 3 31 31 H 1.09009 * 109.47138 * 179.89599 * 1 2 3 32 32 H 1.08999 * 109.61854 * 53.28066 * 4 2 1 33 33 H 1.08992 * 109.62427 * 292.72339 * 4 2 1 34 34 H 1.08999 * 109.46999 * 65.45275 * 9 8 6 35 35 H 1.08996 * 109.46946 * 185.45250 * 9 8 6 36 36 H 1.09004 * 109.46612 * 305.45730 * 9 8 6 37 37 H 1.08995 * 109.46884 * 55.07872 * 10 8 6 38 38 H 1.09000 * 109.46767 * 175.07438 * 10 8 6 39 39 H 1.08997 * 109.46695 * 295.07280 * 10 8 6 40 40 H 0.97002 * 120.00398 * 359.97438 * 12 11 8 41 41 H 0.97001 * 119.99349 * 180.02562 * 12 11 8 42 42 H 1.09001 * 109.66954 * 289.42317 * 14 5 4 43 43 H 1.08998 * 109.70462 * 168.90951 * 14 5 4 44 44 H 1.09008 * 110.73130 * 270.74929 * 16 15 14 45 45 H 1.09005 * 110.73737 * 34.05264 * 16 15 14 46 46 H 1.09002 * 109.99400 * 219.37362 * 17 16 15 47 47 H 1.08998 * 109.77643 * 98.21447 * 17 16 15 48 48 H 0.96999 * 120.00348 * 179.97438 * 22 21 19 49 49 H 1.08999 * 110.37456 * 142.38212 * 27 18 17 50 50 H 1.08991 * 110.37616 * 264.73230 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 1.2500 5 7 3.5036 -0.8611 1.1464 6 6 4.3117 -0.4716 2.1523 7 8 5.5071 -0.6631 2.0787 8 6 3.7300 0.2018 3.3685 9 6 2.7828 -0.7646 4.0825 10 6 4.8601 0.6036 4.3185 11 6 2.9682 1.4315 2.9457 12 7 2.3578 2.1975 3.8715 13 8 2.9036 1.7311 1.7722 14 6 4.0549 -1.4369 -0.0926 15 6 3.4226 -0.7208 -1.2795 16 6 4.0038 0.7024 -1.4206 17 6 3.8641 0.9851 -2.9328 18 7 3.7518 -0.3147 -3.6119 19 6 3.5905 -0.4996 -4.9591 20 1 3.5230 -1.4991 -5.3628 21 6 3.5139 0.5976 -5.8060 22 7 3.5959 1.8156 -5.3141 23 14 3.2862 0.3455 -7.6428 24 1 3.2285 1.6658 -8.3202 25 1 4.4280 -0.4370 -8.1804 26 1 2.0212 -0.3924 -7.8882 27 6 3.8480 -1.3869 -2.6024 28 8 2.0090 -0.6770 -1.1665 29 1 -0.3633 0.5122 0.8908 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3634 -1.0277 -0.0019 32 1 1.5856 -1.7124 1.3130 33 1 1.7904 -0.1448 2.1380 34 1 3.3514 -1.6085 4.4732 35 1 2.2885 -0.2476 4.9050 36 1 2.0337 -1.1261 3.3780 37 1 5.5815 1.2216 3.7840 38 1 4.4480 1.1675 5.1553 39 1 5.3556 -0.2922 4.6928 40 1 2.4086 1.9572 4.8099 41 1 1.8672 2.9888 3.5992 42 1 3.8210 -2.5005 -0.1386 43 1 5.1358 -1.2977 -0.1133 44 1 3.4225 1.4162 -0.8367 45 1 5.0523 0.7223 -1.1234 46 1 4.7433 1.5178 -3.2951 47 1 2.9677 1.5776 -3.1159 48 1 3.5427 2.5824 -5.9058 49 1 3.1705 -2.2039 -2.8509 50 1 4.8729 -1.7509 -2.5318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071179009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:28 Heat of formation + Delta-G solvation = -66.304457 kcal Electronic energy + Delta-G solvation = -33057.620127 eV Core-core repulsion = 28893.668259 eV Total energy + Delta-G solvation = -4163.951868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48488 -39.58094 -38.44896 -36.23350 -35.17493 -34.55844 -33.47418 -32.80372 -31.19443 -29.24575 -28.46127 -27.79779 -26.38597 -25.84430 -24.38200 -23.45454 -21.86654 -21.35398 -20.06099 -19.22736 -18.93679 -18.19854 -17.11884 -16.86913 -16.48866 -16.34329 -15.81764 -15.15546 -15.00508 -14.65147 -14.53433 -14.24160 -14.10792 -13.80758 -13.55494 -13.32681 -12.97793 -12.82836 -12.71055 -12.59604 -12.42916 -12.16969 -12.13244 -11.99648 -11.82607 -11.70753 -11.46496 -11.37403 -10.83526 -10.76607 -10.73850 -10.27835 -10.12742 -10.04093 -10.02045 -9.98002 -9.88010 -9.67051 -9.49199 -9.29886 -8.45433 -8.20512 -6.68948 -5.57038 -2.90183 2.23043 2.43294 2.89858 3.23670 3.49510 3.52769 3.54559 4.04131 4.04362 4.34562 4.42927 4.59185 4.60834 4.85201 4.96802 5.02979 5.16544 5.20365 5.25039 5.33537 5.36781 5.39389 5.48986 5.60677 5.61701 5.64675 5.72862 5.75374 5.84891 5.93192 5.95012 6.06130 6.20399 6.29871 6.34552 6.46355 6.51576 6.64866 6.69026 6.74918 6.87740 6.89374 7.40774 7.68829 7.80834 7.87457 7.91475 7.98970 8.12009 8.39305 9.35080 9.95270 10.62204 11.54503 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.003450 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.383505 B = 8114.186395 C = 8314.654690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.067 3.933 3 H 0.088 0.912 4 C 0.082 3.918 5 N -0.591 5.591 6 C 0.542 3.458 7 O -0.536 6.536 8 C -0.106 4.106 9 C -0.154 4.154 10 C -0.125 4.125 11 C 0.523 3.477 12 N -0.851 5.851 13 O -0.511 6.511 14 C 0.099 3.901 15 C 0.096 3.904 16 C -0.163 4.163 17 C 0.186 3.814 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.291 1.291 25 H -0.286 1.286 26 H -0.286 1.286 27 C 0.153 3.847 28 O -0.347 6.347 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.400 0.600 41 H 0.406 0.594 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.040 0.960 47 H 0.046 0.954 48 H 0.251 0.749 49 H 0.049 0.951 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 -2.619 26.057 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.008 3.992 3 H 0.105 0.895 4 C -0.041 4.041 5 N -0.322 5.322 6 C 0.328 3.672 7 O -0.412 6.412 8 C -0.113 4.113 9 C -0.212 4.212 10 C -0.183 4.183 11 C 0.306 3.694 12 N -0.416 5.416 13 O -0.385 6.385 14 C -0.024 4.024 15 C 0.055 3.945 16 C -0.201 4.201 17 C 0.062 3.938 18 N -0.325 5.325 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.212 1.212 27 C 0.026 3.974 28 O -0.266 6.266 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.229 0.771 41 H 0.237 0.763 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.068 0.932 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.800 -2.626 24.846 25.441 hybrid contribution -0.241 0.365 -0.299 0.530 sum -5.041 -2.261 24.547 25.161 Atomic orbital electron populations 1.21674 0.93184 1.02445 1.02429 1.22534 0.94587 0.97551 0.84492 0.89478 1.22680 0.80238 1.00749 1.00440 1.47888 1.06659 1.61315 1.16334 1.19616 0.86301 0.78186 0.83077 1.90697 1.14686 1.56260 1.79582 1.21114 0.98356 0.94855 0.96925 1.22199 0.99044 0.99057 1.00876 1.21661 0.96376 1.03056 0.97180 1.20090 0.78846 0.84297 0.86121 1.43788 1.56878 1.30493 1.10462 1.90881 1.59348 1.71305 1.16936 1.22165 1.00474 0.97134 0.82588 1.22325 0.81160 0.96596 0.94459 1.23337 0.99869 0.96028 1.00881 1.21096 1.00544 0.87647 0.84562 1.44426 1.85772 1.00179 1.02156 1.19003 1.42670 0.92819 0.80727 0.90510 1.24785 1.02427 0.95280 0.98016 1.69981 1.56912 0.96879 1.33183 0.86199 0.77940 0.76517 0.85099 1.21714 1.21266 1.21244 1.21325 0.97326 0.92547 0.86223 1.87868 1.20067 1.76728 1.41933 0.91779 0.91168 0.92143 0.91238 0.89483 0.90393 0.90882 0.90353 0.91006 0.91683 0.90489 0.77128 0.76283 0.91047 0.88183 0.90950 0.92253 0.94231 0.93612 0.93875 0.93243 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.57 37.15 0.36 -1.45 16 2 C 0.07 1.06 2.96 -26.59 -0.08 0.99 16 3 H 0.09 1.60 4.30 -51.93 -0.22 1.37 16 4 C 0.08 1.06 3.28 -3.53 -0.01 1.05 16 5 N -0.59 -8.84 2.65 -172.69 -0.46 -9.30 16 6 C 0.54 7.96 6.04 -10.99 -0.07 7.89 16 7 O -0.54 -9.53 15.46 5.55 0.09 -9.44 16 8 C -0.11 -1.04 0.60 -156.81 -0.09 -1.13 16 9 C -0.15 -0.98 8.09 37.16 0.30 -0.68 16 10 C -0.12 -1.03 7.74 37.16 0.29 -0.74 16 11 C 0.52 5.32 5.08 -10.98 -0.06 5.27 16 12 N -0.85 -4.62 8.59 31.22 0.27 -4.35 16 13 O -0.51 -7.55 12.69 5.56 0.07 -7.48 16 14 C 0.10 1.68 5.28 -3.92 -0.02 1.66 16 15 C 0.10 1.92 0.84 -89.65 -0.08 1.85 16 16 C -0.16 -3.60 5.87 -25.24 -0.15 -3.75 16 17 C 0.19 5.01 5.39 -2.95 -0.02 4.99 16 18 N -0.60 -16.48 3.40 -170.31 -0.58 -17.06 16 19 C -0.22 -6.59 10.28 -15.06 -0.15 -6.74 16 20 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -28.56 10.31 55.49 0.57 -27.99 16 23 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 C 0.15 3.44 6.42 -2.87 -0.02 3.42 16 28 O -0.35 -6.94 9.93 -35.22 -0.35 -7.29 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 32 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.09 0.93 3.25 -51.93 -0.17 0.76 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.24 7.41 -51.93 -0.38 -0.14 16 36 H 0.08 0.54 4.91 -51.93 -0.26 0.29 16 37 H 0.07 0.76 8.00 -51.93 -0.42 0.34 16 38 H 0.06 0.31 7.43 -51.93 -0.39 -0.08 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.40 0.91 7.55 -40.82 -0.31 0.60 16 41 H 0.41 1.94 8.93 -40.82 -0.36 1.58 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.10 1.80 6.90 -51.93 -0.36 1.44 16 44 H 0.07 1.61 5.91 -51.92 -0.31 1.30 16 45 H 0.06 1.30 7.82 -51.93 -0.41 0.90 16 46 H 0.04 1.16 7.52 -51.93 -0.39 0.77 16 47 H 0.05 1.37 7.37 -51.93 -0.38 0.98 16 48 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.03 0.74 7.99 -51.93 -0.42 0.33 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -37.55 373.38 -7.37 -44.92 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.69 Total: 2.07 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 0.11 Total: 12.24 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.20 Total: -58.70 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.19 Total: -24.21 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.55 -7.37 -44.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071179009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.386 kcal (2) G-P(sol) polarization free energy of solvation -37.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds