Wall clock time and date at job start Sat Apr 11 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.51725 * 2 1 4 4 C 1.53283 * 109.51334 * 120.10078 * 2 1 3 5 5 N 1.47172 * 108.55730 * 172.99995 * 4 2 1 6 6 C 1.34776 * 121.07759 * 128.72845 * 5 4 2 7 7 O 1.21284 * 120.00135 * 175.77291 * 6 5 4 8 8 C 1.50701 * 119.99855 * 355.76986 * 6 5 4 9 9 C 1.53007 * 109.47140 * 62.89091 * 8 6 5 10 10 C 1.53003 * 109.46861 * 182.88835 * 8 6 5 11 11 C 1.50702 * 109.47370 * 302.88782 * 8 6 5 12 12 N 1.34775 * 119.99762 * 179.97438 * 11 8 6 13 13 O 1.21279 * 119.99521 * 0.02562 * 11 8 6 14 14 C 1.47329 * 117.84254 * 308.74984 * 5 4 2 15 15 C 1.52361 * 108.42935 * 49.15498 * 14 5 4 16 16 C 1.54371 * 110.38487 * 73.49473 * 15 14 5 17 17 C 1.54468 * 102.95590 * 152.19744 * 16 15 14 18 18 N 1.47082 * 107.28904 * 338.85339 * 17 16 15 19 19 C 1.36937 * 125.63480 * 178.88823 * 18 17 16 20 20 H 1.08001 * 120.00436 * 179.69384 * 19 18 17 21 21 C 1.38812 * 119.99856 * 359.70296 * 19 18 17 22 22 N 1.31623 * 119.99996 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00074 * 180.27353 * 21 19 18 24 24 H 1.48504 * 109.46862 * 179.72222 * 23 21 19 25 25 H 1.48501 * 109.46984 * 299.71694 * 23 21 19 26 26 H 1.48489 * 109.47320 * 59.72100 * 23 21 19 27 27 C 1.47582 * 108.73788 * 358.63109 * 18 17 16 28 28 O 1.41877 * 111.46737 * 310.00238 * 15 14 5 29 29 H 1.08990 * 109.47302 * 299.89799 * 1 2 3 30 30 H 1.09004 * 109.47012 * 59.90038 * 1 2 3 31 31 H 1.09009 * 109.47138 * 179.89599 * 1 2 3 32 32 H 1.08999 * 109.61854 * 53.28066 * 4 2 1 33 33 H 1.08992 * 109.62427 * 292.72339 * 4 2 1 34 34 H 1.08999 * 109.46999 * 65.45275 * 9 8 6 35 35 H 1.08996 * 109.46946 * 185.45250 * 9 8 6 36 36 H 1.09004 * 109.46612 * 305.45730 * 9 8 6 37 37 H 1.08995 * 109.46884 * 55.07872 * 10 8 6 38 38 H 1.09000 * 109.46767 * 175.07438 * 10 8 6 39 39 H 1.08997 * 109.46695 * 295.07280 * 10 8 6 40 40 H 0.97002 * 120.00398 * 359.97438 * 12 11 8 41 41 H 0.97001 * 119.99349 * 180.02562 * 12 11 8 42 42 H 1.09001 * 109.66954 * 289.42317 * 14 5 4 43 43 H 1.08998 * 109.70462 * 168.90951 * 14 5 4 44 44 H 1.09008 * 110.73130 * 270.74929 * 16 15 14 45 45 H 1.09005 * 110.73737 * 34.05264 * 16 15 14 46 46 H 1.09002 * 109.99400 * 219.37362 * 17 16 15 47 47 H 1.08998 * 109.77643 * 98.21447 * 17 16 15 48 48 H 0.96999 * 120.00348 * 179.97438 * 22 21 19 49 49 H 1.08999 * 110.37456 * 142.38212 * 27 18 17 50 50 H 1.08991 * 110.37616 * 264.73230 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 1.2500 5 7 3.5036 -0.8611 1.1464 6 6 4.3117 -0.4716 2.1523 7 8 5.5071 -0.6631 2.0787 8 6 3.7300 0.2018 3.3685 9 6 2.7828 -0.7646 4.0825 10 6 4.8601 0.6036 4.3185 11 6 2.9682 1.4315 2.9457 12 7 2.3578 2.1975 3.8715 13 8 2.9036 1.7311 1.7722 14 6 4.0549 -1.4369 -0.0926 15 6 3.4226 -0.7208 -1.2795 16 6 4.0038 0.7024 -1.4206 17 6 3.8641 0.9851 -2.9328 18 7 3.7518 -0.3147 -3.6119 19 6 3.5905 -0.4996 -4.9591 20 1 3.5230 -1.4991 -5.3628 21 6 3.5139 0.5976 -5.8060 22 7 3.5959 1.8156 -5.3141 23 14 3.2862 0.3455 -7.6428 24 1 3.2285 1.6658 -8.3202 25 1 4.4280 -0.4370 -8.1804 26 1 2.0212 -0.3924 -7.8882 27 6 3.8480 -1.3869 -2.6024 28 8 2.0090 -0.6770 -1.1665 29 1 -0.3633 0.5122 0.8908 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3634 -1.0277 -0.0019 32 1 1.5856 -1.7124 1.3130 33 1 1.7904 -0.1448 2.1380 34 1 3.3514 -1.6085 4.4732 35 1 2.2885 -0.2476 4.9050 36 1 2.0337 -1.1261 3.3780 37 1 5.5815 1.2216 3.7840 38 1 4.4480 1.1675 5.1553 39 1 5.3556 -0.2922 4.6928 40 1 2.4086 1.9572 4.8099 41 1 1.8672 2.9888 3.5992 42 1 3.8210 -2.5005 -0.1386 43 1 5.1358 -1.2977 -0.1133 44 1 3.4225 1.4162 -0.8367 45 1 5.0523 0.7223 -1.1234 46 1 4.7433 1.5178 -3.2951 47 1 2.9677 1.5776 -3.1159 48 1 3.5427 2.5824 -5.9058 49 1 3.1705 -2.2039 -2.8509 50 1 4.8729 -1.7509 -2.5318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071179009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:27 Heat of formation + Delta-G solvation = -96.764196 kcal Electronic energy + Delta-G solvation = -33058.940960 eV Core-core repulsion = 28893.668259 eV Total energy + Delta-G solvation = -4165.272702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.50475 -40.89512 -39.58434 -37.96440 -36.01243 -35.83684 -34.80745 -33.97639 -32.89679 -31.11215 -30.10800 -28.56096 -27.49390 -27.37306 -25.89001 -24.71782 -23.17602 -22.50758 -22.03299 -20.49343 -20.07125 -19.10126 -18.95729 -18.06148 -17.66924 -17.44342 -16.85181 -16.75147 -16.32220 -15.97459 -15.89451 -15.67637 -15.35595 -15.11860 -14.99261 -14.89854 -14.07171 -14.04189 -13.86436 -13.60676 -13.50515 -13.41543 -13.18600 -13.15428 -13.05989 -12.99819 -12.87417 -12.77376 -12.72179 -12.23517 -12.20959 -12.07920 -12.03424 -11.85490 -11.66746 -11.50114 -10.96991 -10.89210 -10.72910 -10.71127 -10.57597 -9.50752 -8.93515 -7.84502 -5.21685 1.34729 1.43894 1.49397 1.52216 1.55310 1.81499 2.48922 2.53258 2.63641 3.15396 3.33340 3.47280 3.61016 3.72771 3.77903 3.85922 3.88443 3.92583 3.99332 4.08720 4.23584 4.36703 4.39890 4.45772 4.56742 4.64035 4.65936 4.69186 4.70689 4.75655 4.76083 4.81505 4.88726 4.92611 5.02654 5.15995 5.16661 5.19083 5.25408 5.32839 5.40993 5.55716 5.66869 5.90880 6.15004 6.28519 6.40065 6.41753 6.99887 7.06481 7.31185 7.73538 8.39949 9.26431 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.003450 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.383505 B = 8114.186395 C = 8314.654690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.059 0.941 4 C 0.090 3.910 5 N -0.594 5.594 6 C 0.531 3.469 7 O -0.576 6.576 8 C -0.101 4.101 9 C -0.152 4.152 10 C -0.123 4.123 11 C 0.521 3.479 12 N -0.823 5.823 13 O -0.565 6.565 14 C 0.106 3.894 15 C 0.112 3.888 16 C -0.144 4.144 17 C 0.202 3.798 18 N -0.620 5.620 19 C -0.243 4.243 20 H 0.088 0.912 21 C -0.070 4.070 22 N -0.956 5.956 23 Si 0.986 3.014 24 H -0.295 1.295 25 H -0.274 1.274 26 H -0.275 1.275 27 C 0.147 3.853 28 O -0.372 6.372 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.420 0.580 41 H 0.413 0.587 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.001 0.999 47 H 0.005 0.995 48 H 0.246 0.754 49 H 0.056 0.944 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 -4.094 29.115 30.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.000 4.000 3 H 0.077 0.923 4 C -0.032 4.032 5 N -0.325 5.325 6 C 0.319 3.681 7 O -0.456 6.456 8 C -0.107 4.107 9 C -0.209 4.209 10 C -0.181 4.181 11 C 0.304 3.696 12 N -0.389 5.389 13 O -0.443 6.443 14 C -0.018 4.018 15 C 0.070 3.930 16 C -0.182 4.182 17 C 0.077 3.923 18 N -0.346 5.346 19 C -0.372 4.372 20 H 0.105 0.895 21 C -0.262 4.262 22 N -0.605 5.605 23 Si 0.813 3.187 24 H -0.221 1.221 25 H -0.200 1.200 26 H -0.201 1.201 27 C 0.021 3.979 28 O -0.291 6.291 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.131 0.869 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.252 0.748 41 H 0.245 0.755 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.020 0.980 47 H 0.023 0.977 48 H 0.055 0.945 49 H 0.074 0.926 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.580 -4.122 27.997 29.054 hybrid contribution 0.302 0.877 -1.181 1.502 sum -6.279 -3.245 26.816 27.732 Atomic orbital electron populations 1.21685 0.90785 1.03594 1.03003 1.22793 0.96447 0.96227 0.84550 0.92273 1.22785 0.78793 1.01969 0.99668 1.47981 1.07722 1.61181 1.15598 1.20587 0.85901 0.77397 0.84206 1.90671 1.16505 1.57695 1.80687 1.21150 0.99449 0.95163 0.94941 1.22279 0.98240 0.98795 1.01599 1.21711 0.95512 1.03179 0.97694 1.20209 0.78838 0.84649 0.85895 1.43556 1.54935 1.29546 1.10820 1.90892 1.61543 1.72637 1.19236 1.21895 0.99350 0.97986 0.82529 1.22035 0.81845 0.94417 0.94668 1.23077 0.99879 0.98186 0.97087 1.20707 0.96791 0.87253 0.87577 1.44707 1.85743 1.01465 1.02693 1.19492 1.42267 0.93426 0.81990 0.89465 1.25758 1.02495 0.94938 1.03052 1.70239 1.58037 0.97630 1.34578 0.85046 0.78407 0.76304 0.78920 1.22078 1.19959 1.20061 1.21536 0.98231 0.91687 0.86444 1.87822 1.19508 1.77230 1.44559 0.88312 0.93518 0.90605 0.88857 0.86769 0.89767 0.86871 0.90589 0.94069 0.87438 0.90347 0.74801 0.75477 0.88769 0.89653 0.91165 0.92521 0.98034 0.97679 0.94527 0.92572 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.57 71.98 0.69 -2.54 16 2 C 0.06 1.80 2.96 30.69 0.09 1.89 16 3 H 0.06 2.22 4.30 -2.39 -0.01 2.21 16 4 C 0.09 2.11 3.28 86.35 0.28 2.39 16 5 N -0.59 -17.17 2.65 -818.66 -2.17 -19.34 16 6 C 0.53 15.12 6.04 87.66 0.53 15.65 16 7 O -0.58 -20.71 15.46 -3.04 -0.05 -20.75 16 8 C -0.10 -1.71 0.60 -53.67 -0.03 -1.74 16 9 C -0.15 -1.24 8.09 71.98 0.58 -0.65 16 10 C -0.12 -1.74 7.74 71.98 0.56 -1.18 16 11 C 0.52 9.37 5.08 87.66 0.45 9.82 16 12 N -0.82 -5.86 8.59 -173.53 -1.49 -7.35 16 13 O -0.56 -16.40 12.69 -3.03 -0.04 -16.43 16 14 C 0.11 3.56 5.28 86.01 0.45 4.01 16 15 C 0.11 4.56 0.84 -10.16 -0.01 4.56 16 16 C -0.14 -6.74 5.87 31.56 0.19 -6.55 16 17 C 0.20 11.64 5.39 86.77 0.47 12.11 16 18 N -0.62 -35.51 3.40 -692.74 -2.36 -37.87 16 19 C -0.24 -14.70 10.28 84.03 0.86 -13.84 16 20 H 0.09 4.95 7.83 -2.91 -0.02 4.93 16 21 C -0.07 -4.28 5.49 84.86 0.47 -3.81 16 22 N -0.96 -62.21 10.31 21.65 0.22 -61.98 16 23 Si 0.99 48.51 29.55 68.60 2.03 50.53 16 24 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 25 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 26 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 27 C 0.15 6.73 6.42 86.55 0.56 7.28 16 28 O -0.37 -14.97 9.93 -148.95 -1.48 -16.45 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.09 1.79 8.13 -2.39 -0.02 1.77 16 33 H 0.11 2.05 3.25 -2.39 -0.01 2.04 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.11 0.03 7.41 -2.39 -0.02 0.01 16 36 H 0.08 0.69 4.91 -2.38 -0.01 0.68 16 37 H 0.04 0.84 8.00 -2.39 -0.02 0.82 16 38 H 0.11 0.54 7.43 -2.39 -0.02 0.52 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.42 -0.26 7.55 -92.71 -0.70 -0.96 16 41 H 0.41 2.62 8.93 -92.71 -0.83 1.79 16 42 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.09 3.13 6.90 -2.39 -0.02 3.12 16 44 H 0.07 3.33 5.91 -2.38 -0.01 3.31 16 45 H 0.06 2.64 7.82 -2.38 -0.02 2.62 16 46 H 0.00 0.09 7.52 -2.39 -0.02 0.08 16 47 H 0.00 0.32 7.37 -2.39 -0.02 0.30 16 48 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 49 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 50 H 0.05 2.07 7.99 -2.39 -0.02 2.05 16 Total: -1.00 -89.23 373.38 0.26 -88.98 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -0.54 Total: 13.27 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 6.13 Total: 27.39 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -5.79 Total: -126.54 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -1.56 Total: -53.63 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.53 kcal Total: -89.23 0.26 -88.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071179009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.788 kcal (2) G-P(sol) polarization free energy of solvation -89.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds