Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42891 * 114.00369 * 2 1 4 4 C 1.53000 * 109.47378 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46833 * 64.99862 * 4 3 2 6 6 C 1.46770 * 124.34831 * 90.00481 * 5 4 3 7 7 C 1.54477 * 105.47416 * 162.96164 * 6 5 4 8 8 H 1.09000 * 110.96491 * 267.26096 * 7 6 5 9 9 C 1.50697 * 110.96991 * 143.53407 * 7 6 5 10 10 O 1.21280 * 119.99955 * 3.08754 * 9 7 6 11 11 N 1.34779 * 119.99752 * 183.08744 * 9 7 6 12 12 C 1.46502 * 119.99836 * 179.97438 * 11 9 7 13 13 H 1.09004 * 110.91232 * 37.45080 * 12 11 9 14 14 C 1.54903 * 111.00519 * 273.54755 * 12 11 9 15 15 N 1.47432 * 104.82907 * 204.91512 * 14 12 11 16 16 C 1.36939 * 125.64614 * 204.09177 * 15 14 12 17 17 H 1.07998 * 119.99883 * 164.05117 * 16 15 14 18 18 C 1.38809 * 119.99995 * 344.04804 * 16 15 14 19 19 N 1.31624 * 120.00430 * 156.77579 * 18 16 15 20 20 Si 1.86806 * 120.00117 * 336.77366 * 18 16 15 21 21 H 1.48501 * 109.47085 * 90.00142 * 20 18 16 22 22 H 1.48497 * 109.47205 * 330.00090 * 20 18 16 23 23 H 1.48504 * 109.46923 * 209.99879 * 20 18 16 24 24 C 1.47011 * 108.70381 * 24.35951 * 15 14 12 25 25 C 1.54332 * 107.26886 * 358.58232 * 24 15 14 26 26 H 1.08998 * 110.67195 * 96.52163 * 25 24 15 27 27 C 1.52999 * 110.85499 * 219.67559 * 25 24 15 28 28 C 1.54630 * 101.79972 * 25.39420 * 7 6 5 29 29 C 1.34414 * 124.35347 * 269.97579 * 5 4 3 30 30 O 1.21291 * 124.94076 * 0.44161 * 29 5 4 31 31 H 1.09002 * 109.46740 * 60.00061 * 1 2 3 32 32 H 1.08997 * 109.47646 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46764 * 300.00572 * 1 2 3 34 34 H 1.09000 * 109.47325 * 59.99701 * 3 2 1 35 35 H 1.09006 * 109.47373 * 300.00124 * 3 2 1 36 36 H 1.08998 * 109.46658 * 304.99788 * 4 3 2 37 37 H 1.08997 * 109.46943 * 185.00331 * 4 3 2 38 38 H 1.08997 * 110.24464 * 43.95537 * 6 5 4 39 39 H 1.09003 * 110.24110 * 281.95992 * 6 5 4 40 40 H 0.96999 * 120.00491 * 0.02562 * 11 9 7 41 41 H 1.09003 * 110.36676 * 86.08177 * 14 12 11 42 42 H 1.08999 * 110.37032 * 323.75567 * 14 12 11 43 43 H 0.97001 * 119.99004 * 4.52131 * 19 18 16 44 44 H 1.09000 * 109.88765 * 118.12677 * 24 15 14 45 45 H 1.09008 * 109.88544 * 239.29336 * 24 15 14 46 46 H 1.08992 * 109.47457 * 173.69142 * 27 25 24 47 47 H 1.09005 * 109.47103 * 293.69345 * 27 25 24 48 48 H 1.09004 * 109.46692 * 53.68814 * 27 25 24 49 49 H 1.09000 * 110.48263 * 93.90040 * 28 7 6 50 50 H 1.09001 * 110.48666 * 216.54457 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.3131 1.3076 -2.4706 7 6 5.1186 0.3218 -3.3456 8 1 6.1888 0.4272 -3.1677 9 6 4.7962 0.5092 -4.8057 10 8 4.0366 1.3894 -5.1508 11 7 5.3521 -0.3013 -5.7279 12 6 5.0382 -0.1194 -7.1473 13 1 4.9473 0.9386 -7.3932 14 6 3.7530 -0.8921 -7.5353 15 7 3.8860 -1.1434 -8.9820 16 6 2.8518 -1.3646 -9.8519 17 1 3.0150 -1.2838 -10.9164 18 6 1.5939 -1.6929 -9.3655 19 7 0.5247 -1.4647 -10.0985 20 14 1.4183 -2.4584 -7.6706 21 1 1.2570 -1.3852 -6.6570 22 1 2.6321 -3.2551 -7.3591 23 1 0.2260 -3.3435 -7.6484 24 6 5.3130 -1.1235 -9.3347 25 6 6.0995 -0.8096 -8.0444 26 1 6.4588 -1.7278 -7.5798 27 6 7.2639 0.1398 -8.3337 28 6 4.6050 -1.0451 -2.8365 29 6 4.1259 -0.7600 -1.4295 30 8 3.9085 -1.6038 -0.5857 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.6887 1.8463 0.8899 35 1 1.6887 1.8464 -0.8900 36 1 3.8508 0.5684 0.8427 37 1 3.9785 2.1764 0.0903 38 1 4.9213 2.1783 -2.2257 39 1 3.4041 1.6149 -2.9876 40 1 5.9593 -1.0055 -5.4519 41 1 2.8702 -0.2848 -7.3354 42 1 3.6977 -1.8344 -6.9901 43 1 0.6198 -1.1286 -11.0034 44 1 5.6119 -2.0959 -9.7259 45 1 5.5003 -0.3489 -10.0785 46 1 7.7340 0.4347 -7.3956 47 1 7.9961 -0.3647 -8.9642 48 1 6.8911 1.0259 -8.8476 49 1 3.7805 -1.3976 -3.4561 50 1 5.4137 -1.7758 -2.8241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079795864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -84.273704 kcal Electronic energy + Delta-G solvation = -30875.581741 eV Core-core repulsion = 26710.850668 eV Total energy + Delta-G solvation = -4164.731073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.97541 -39.56083 -38.03461 -37.84669 -36.24094 -34.25511 -33.58024 -32.72444 -31.01583 -29.68806 -28.10868 -27.73200 -26.47313 -26.03968 -24.31254 -23.13223 -22.50146 -20.90422 -20.45901 -19.70420 -19.45016 -17.72901 -17.44242 -17.08322 -16.77647 -16.34210 -16.09038 -15.68151 -15.33408 -15.07810 -14.92522 -14.55505 -14.22986 -13.87640 -13.76514 -13.64824 -13.45661 -13.18304 -13.01711 -12.96771 -12.93312 -12.46836 -12.23199 -12.04836 -11.97073 -11.84525 -11.71648 -11.55119 -11.37807 -11.13987 -11.09144 -10.74375 -10.49272 -10.15889 -10.10507 -9.86960 -9.67659 -9.65335 -9.23400 -8.90579 -8.86820 -8.48289 -7.07441 -6.31131 -3.23133 2.50099 2.56778 2.68538 3.14579 3.45911 3.51697 3.57332 3.67222 4.01664 4.14461 4.50345 4.60761 4.66277 4.73955 4.78751 4.82047 4.91477 4.99129 5.04880 5.06609 5.14220 5.17552 5.19754 5.21912 5.24137 5.34348 5.50211 5.53186 5.54697 5.54834 5.66582 5.70388 5.72126 5.83204 5.94103 6.09367 6.21294 6.29494 6.37223 6.51400 6.59458 6.73652 6.76168 6.91395 6.98664 7.51313 7.73275 8.07954 8.20769 8.35148 9.03368 9.58439 10.24867 11.16196 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011515 B = 0.003469 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.044753 B = 8069.962154 C = 9658.256687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.038 3.962 4 C 0.131 3.869 5 N -0.619 5.619 6 C 0.117 3.883 7 C -0.123 4.123 8 H 0.118 0.882 9 C 0.523 3.477 10 O -0.528 6.528 11 N -0.714 5.714 12 C 0.135 3.865 13 H 0.099 0.901 14 C 0.101 3.899 15 N -0.606 5.606 16 C -0.329 4.329 17 H 0.076 0.924 18 C -0.015 4.015 19 N -0.920 5.920 20 Si 1.061 2.939 21 H -0.293 1.293 22 H -0.287 1.287 23 H -0.298 1.298 24 C 0.140 3.860 25 C -0.110 4.110 26 H 0.078 0.922 27 C -0.138 4.138 28 C -0.148 4.148 29 C 0.526 3.474 30 O -0.516 6.516 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.399 0.601 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.263 0.737 44 H 0.030 0.970 45 H 0.033 0.967 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.111 0.889 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.672 6.848 19.606 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.040 4.040 4 C 0.009 3.991 5 N -0.354 5.354 6 C -0.006 4.006 7 C -0.145 4.145 8 H 0.136 0.864 9 C 0.307 3.693 10 O -0.403 6.403 11 N -0.364 5.364 12 C 0.030 3.970 13 H 0.117 0.883 14 C -0.026 4.026 15 N -0.333 5.333 16 C -0.456 4.456 17 H 0.093 0.907 18 C -0.216 4.216 19 N -0.560 5.560 20 Si 0.893 3.107 21 H -0.220 1.220 22 H -0.214 1.214 23 H -0.226 1.226 24 C 0.014 3.986 25 C -0.130 4.130 26 H 0.097 0.903 27 C -0.195 4.195 28 C -0.189 4.189 29 C 0.313 3.687 30 O -0.390 6.390 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.233 0.767 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.129 0.871 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.905 6.360 20.875 24.396 hybrid contribution 1.139 0.441 -1.133 1.666 sum 12.044 6.801 19.742 24.105 Atomic orbital electron populations 1.22745 0.81164 1.02920 0.99698 1.88049 1.19451 1.26649 1.95295 1.23024 0.94424 0.85920 1.00619 1.21401 0.92328 0.99130 0.86242 1.48176 1.67480 1.07344 1.12437 1.21975 1.00638 0.93902 0.84070 1.22226 1.02599 0.96718 0.92912 0.86415 1.20038 0.80502 0.81807 0.86947 1.90756 1.34910 1.33173 1.81496 1.45916 1.48395 1.35050 1.07074 1.22347 0.95686 1.01015 0.77971 0.88263 1.22314 0.96554 0.96998 0.86705 1.44664 1.01070 1.84083 1.03508 1.20014 0.88877 1.47152 0.89581 0.90661 1.25891 0.90842 0.98819 1.06094 1.70908 1.28773 1.45614 1.10718 0.83878 0.74460 0.76916 0.75453 1.22031 1.21405 1.22563 1.21407 0.85065 0.98548 0.93629 1.22447 0.94888 0.98392 0.97257 0.90339 1.21740 0.97356 0.99289 1.01136 1.22401 1.04081 0.96967 0.95410 1.20611 0.76671 0.82175 0.89226 1.90739 1.50776 1.49007 1.48492 0.94063 0.89591 0.94305 0.92406 0.92852 0.89094 0.88712 0.89770 0.89057 0.76656 0.91833 0.95085 0.92646 0.95162 0.94915 0.92897 0.92512 0.92319 0.87094 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.80 10.22 -35.23 -0.36 -5.16 16 3 C 0.04 0.35 6.28 37.16 0.23 0.59 16 4 C 0.13 1.11 6.33 -4.04 -0.03 1.08 16 5 N -0.62 -6.42 2.90 -172.39 -0.50 -6.92 16 6 C 0.12 1.09 6.69 -3.12 -0.02 1.07 16 7 C -0.12 -1.10 3.54 -90.14 -0.32 -1.42 16 8 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 9 C 0.52 6.77 7.06 -10.99 -0.08 6.69 16 10 O -0.53 -9.13 15.28 5.56 0.08 -9.05 16 11 N -0.71 -8.89 5.22 -51.73 -0.27 -9.16 16 12 C 0.14 2.22 2.77 -65.78 -0.18 2.03 16 13 H 0.10 1.78 7.64 -51.93 -0.40 1.39 16 14 C 0.10 2.21 4.40 -2.53 -0.01 2.20 16 15 N -0.61 -14.82 3.23 -170.07 -0.55 -15.37 16 16 C -0.33 -9.51 10.44 -15.06 -0.16 -9.66 16 17 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 18 C -0.02 -0.46 5.43 -17.43 -0.09 -0.56 16 19 N -0.92 -29.25 13.70 55.49 0.76 -28.49 16 20 Si 1.06 27.56 24.70 -169.99 -4.20 23.36 16 21 H -0.29 -7.43 6.70 56.52 0.38 -7.06 16 22 H -0.29 -6.97 6.25 56.52 0.35 -6.62 16 23 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 24 C 0.14 2.69 6.85 -3.07 -0.02 2.67 16 25 C -0.11 -1.59 3.16 -88.78 -0.28 -1.87 16 26 H 0.08 1.00 7.99 -51.93 -0.42 0.59 16 27 C -0.14 -1.57 9.16 37.16 0.34 -1.23 16 28 C -0.15 -1.51 6.41 -26.71 -0.17 -1.68 16 29 C 0.53 6.74 7.73 -10.83 -0.08 6.66 16 30 O -0.52 -8.58 17.45 5.55 0.10 -8.48 16 31 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.85 7.93 -51.93 -0.41 0.44 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.06 7.01 -51.93 -0.36 0.69 16 40 H 0.40 3.61 8.51 -40.82 -0.35 3.26 16 41 H 0.06 1.59 6.52 -51.93 -0.34 1.26 16 42 H 0.03 0.69 5.45 -51.93 -0.28 0.41 16 43 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.03 0.63 7.77 -51.92 -0.40 0.23 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 49 H 0.11 1.31 7.89 -51.93 -0.41 0.90 16 50 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -38.33 399.28 -7.18 -45.52 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.51 Total: -0.24 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 0.24 Total: 7.98 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.56 Total: -59.94 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.18 Total: -22.69 kcal Atomic # 14 Polarization: 27.56 SS G_CDS: -4.20 Total: 23.36 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.33 -7.18 -45.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079795864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.755 kcal (2) G-P(sol) polarization free energy of solvation -38.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds