Wall clock time and date at job start Sat Apr 11 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99953 * 2 1 4 4 C 1.53000 * 109.46967 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46846 * 65.00346 * 4 3 2 6 6 C 1.46821 * 124.33373 * 270.01235 * 5 4 3 7 7 C 1.54477 * 105.44573 * 163.00372 * 6 5 4 8 8 H 1.09005 * 110.96958 * 267.23116 * 7 6 5 9 9 C 1.50702 * 110.97482 * 143.50649 * 7 6 5 10 10 O 1.21284 * 119.99441 * 3.09171 * 9 7 6 11 11 N 1.34773 * 120.00146 * 183.08786 * 9 7 6 12 12 C 1.46504 * 119.99769 * 179.97438 * 11 9 7 13 13 H 1.09003 * 110.78034 * 328.24330 * 12 11 9 14 14 C 1.55160 * 110.71884 * 91.48118 * 12 11 9 15 15 C 1.54909 * 101.58106 * 153.86675 * 14 12 11 16 16 N 1.47425 * 104.83141 * 322.98671 * 15 14 12 17 17 C 1.36933 * 125.64542 * 204.39474 * 16 15 14 18 18 H 1.08005 * 119.99541 * 179.69129 * 17 16 15 19 19 C 1.38813 * 120.00564 * 359.69503 * 17 16 15 20 20 N 1.31616 * 119.99514 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00305 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47103 * 60.00082 * 21 19 17 23 23 H 1.48502 * 109.47327 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47083 * 299.99999 * 21 19 17 25 25 C 1.47026 * 108.70074 * 24.13120 * 16 15 14 26 26 H 1.08994 * 109.88320 * 239.52037 * 25 16 15 27 27 C 1.53004 * 109.88078 * 118.35859 * 25 16 15 28 28 C 1.54631 * 101.80080 * 25.37142 * 7 6 5 29 29 C 1.34421 * 124.35303 * 89.97421 * 5 4 3 30 30 O 1.21285 * 124.93602 * 0.44645 * 29 5 4 31 31 H 1.09005 * 109.47554 * 59.99832 * 1 2 3 32 32 H 1.08999 * 109.47252 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46889 * 299.99545 * 1 2 3 34 34 H 1.09000 * 109.47103 * 60.00272 * 3 2 1 35 35 H 1.08998 * 109.47133 * 300.00241 * 3 2 1 36 36 H 1.08995 * 109.47415 * 305.00703 * 4 3 2 37 37 H 1.09000 * 109.47325 * 185.00134 * 4 3 2 38 38 H 1.08999 * 110.28375 * 44.00077 * 6 5 4 39 39 H 1.09004 * 110.23858 * 281.97793 * 6 5 4 40 40 H 0.96990 * 120.00428 * 359.97438 * 11 9 7 41 41 H 1.09006 * 111.00068 * 271.93683 * 14 12 11 42 42 H 1.08996 * 111.00195 * 35.78667 * 14 12 11 43 43 H 1.08996 * 110.36158 * 204.14752 * 15 14 12 44 44 H 1.09002 * 110.36956 * 81.83034 * 15 14 12 45 45 H 0.97002 * 119.99999 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.46790 * 61.44844 * 27 25 16 47 47 H 1.08999 * 109.46948 * 181.44879 * 27 25 16 48 48 H 1.08998 * 109.46799 * 301.45203 * 27 25 16 49 49 H 1.08991 * 110.49218 * 93.89830 * 28 7 6 50 50 H 1.09004 * 110.48879 * 216.54845 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9755 0.5645 -1.2528 6 6 4.1375 -0.8816 -1.4485 7 6 4.1797 -1.0874 -2.9789 8 1 3.1851 -1.2993 -3.3716 9 6 5.1471 -2.1819 -3.3495 10 8 5.7221 -2.8027 -2.4807 11 7 5.3732 -2.4708 -4.6464 12 6 6.3142 -3.5344 -5.0066 13 1 7.1160 -3.6066 -4.2717 14 6 5.5781 -4.8926 -5.1513 15 6 6.5052 -5.6451 -6.1383 16 7 6.9729 -4.6112 -7.0795 17 6 7.4084 -4.8346 -8.3584 18 1 7.7272 -4.0055 -8.9727 19 6 7.4401 -6.1265 -8.8652 20 7 7.0520 -7.1368 -8.1163 21 14 8.0336 -6.4310 -10.6100 22 1 9.4346 -5.9578 -10.7460 23 1 7.9715 -7.8846 -10.9074 24 1 7.1670 -5.6927 -11.5635 25 6 6.8882 -3.3000 -6.4198 26 1 6.2266 -2.6430 -6.9843 27 6 8.2821 -2.6775 -6.3186 28 6 4.6867 0.2886 -3.4692 29 6 4.2822 1.2461 -2.3701 30 8 4.2412 2.4532 -2.4805 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.6886 1.8464 0.8900 35 1 1.6885 1.8464 -0.8899 36 1 3.8514 0.5682 0.8408 37 1 3.9785 2.1765 0.0889 38 1 3.2915 -1.4181 -1.0189 39 1 5.0694 -1.2212 -0.9965 40 1 4.9131 -1.9746 -5.3412 41 1 5.5234 -5.4112 -4.1941 42 1 4.5841 -4.7549 -5.5767 43 1 5.9476 -6.4169 -6.6688 44 1 7.3494 -6.0837 -5.6064 45 1 7.0738 -8.0396 -8.4706 46 1 8.6864 -2.5271 -7.3196 47 1 8.2152 -1.7180 -5.8058 48 1 8.9378 -3.3439 -5.7583 49 1 5.7704 0.2768 -3.5851 50 1 4.2046 0.5604 -4.4083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088602078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:23 Heat of formation + Delta-G solvation = -84.570754 kcal Electronic energy + Delta-G solvation = -30258.315140 eV Core-core repulsion = 26093.571186 eV Total energy + Delta-G solvation = -4164.743954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.03113 -39.50581 -38.20229 -37.67610 -36.31769 -34.15876 -33.62002 -32.00540 -30.41542 -29.74367 -28.56465 -27.89600 -26.72458 -25.13039 -24.02947 -23.54676 -22.86074 -20.45349 -20.21616 -19.74692 -19.47910 -17.57930 -17.38997 -16.85444 -16.81852 -16.13279 -16.04710 -15.69200 -15.54146 -14.90580 -14.80250 -14.65917 -14.10478 -13.91553 -13.82713 -13.61139 -13.42149 -13.07972 -12.82634 -12.67489 -12.47345 -12.31287 -12.16332 -12.05271 -11.76420 -11.60960 -11.57687 -11.47149 -11.17318 -10.87256 -10.85205 -10.61117 -10.47193 -10.25169 -10.14542 -10.05148 -9.78986 -9.68792 -9.56706 -8.97972 -8.72550 -8.64920 -6.90345 -5.67870 -3.10768 2.30791 2.59235 2.66142 3.21287 3.36570 3.38586 3.43312 3.44341 4.02348 4.12615 4.45424 4.57879 4.60806 4.62046 4.75862 4.83698 4.96321 4.98242 5.00055 5.11423 5.25588 5.29044 5.30554 5.36131 5.39466 5.39610 5.51321 5.56699 5.59237 5.71889 5.79144 6.09387 6.20591 6.21669 6.27897 6.31353 6.49099 6.56952 6.66429 6.67552 6.84055 6.84741 7.06810 7.48597 7.59637 7.63036 7.82574 7.89214 8.27052 8.33209 9.18157 9.79076 10.42618 11.35445 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023095 B = 0.002188 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.107229 B =12792.555899 C =13307.333318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.042 3.958 4 C 0.129 3.871 5 N -0.612 5.612 6 C 0.121 3.879 7 C -0.124 4.124 8 H 0.117 0.883 9 C 0.525 3.475 10 O -0.537 6.537 11 N -0.710 5.710 12 C 0.134 3.866 13 H 0.095 0.905 14 C -0.153 4.153 15 C 0.152 3.848 16 N -0.595 5.595 17 C -0.221 4.221 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.155 3.845 26 H 0.036 0.964 27 C -0.155 4.155 28 C -0.145 4.145 29 C 0.520 3.480 30 O -0.535 6.535 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.399 0.601 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.015 0.985 45 H 0.253 0.747 46 H 0.054 0.946 47 H 0.038 0.962 48 H 0.051 0.949 49 H 0.111 0.889 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.603 15.180 15.771 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.035 4.035 4 C 0.007 3.993 5 N -0.346 5.346 6 C -0.002 4.002 7 C -0.146 4.146 8 H 0.135 0.865 9 C 0.309 3.691 10 O -0.414 6.414 11 N -0.360 5.360 12 C 0.029 3.971 13 H 0.113 0.887 14 C -0.193 4.193 15 C 0.027 3.973 16 N -0.320 5.320 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.047 3.953 26 H 0.054 0.946 27 C -0.215 4.215 28 C -0.185 4.185 29 C 0.308 3.692 30 O -0.412 6.412 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.234 0.766 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.127 0.873 44 H 0.033 0.967 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.129 0.871 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.069 15.020 16.252 24.744 hybrid contribution -0.162 0.232 -1.238 1.270 sum -11.230 15.253 15.015 24.170 Atomic orbital electron populations 1.22743 0.80921 1.02907 0.99892 1.87891 1.19794 1.27491 1.95419 1.23051 0.94273 0.85310 1.00908 1.21432 0.92086 0.99871 0.85920 1.48235 1.66341 1.08024 1.11983 1.22027 1.04348 0.79898 0.93939 1.22247 1.00825 0.93998 0.97481 0.86495 1.19963 0.82390 0.83708 0.83023 1.90716 1.50150 1.52044 1.48463 1.46039 1.45229 1.37868 1.06847 1.22200 0.91442 0.86376 0.97065 0.88712 1.23404 0.99809 0.95695 1.00359 1.21952 0.94481 0.92190 0.88639 1.44475 1.76102 1.00074 1.11377 1.18970 1.35910 0.92731 0.87324 0.90514 1.24787 1.01791 0.95479 0.98509 1.69781 1.53253 0.98662 1.35242 0.86160 0.78531 0.76929 0.83899 1.21223 1.21594 1.21178 1.20999 0.94420 0.89748 0.90165 0.94644 1.22241 0.99091 0.98733 1.01415 1.22345 1.04443 0.92557 0.99200 1.20812 0.75980 0.88134 0.84253 1.90727 1.54141 1.13584 1.82786 0.94136 0.89466 0.94136 0.92163 0.92793 0.89136 0.88322 0.88856 0.89103 0.76631 0.91981 0.91961 0.87335 0.96741 0.93625 0.92690 0.94345 0.92950 0.87111 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.27 9.89 -35.23 -0.35 -3.61 16 3 C 0.04 0.31 6.28 37.16 0.23 0.54 16 4 C 0.13 0.99 6.32 -4.04 -0.03 0.97 16 5 N -0.61 -5.86 2.88 -172.37 -0.50 -6.36 16 6 C 0.12 1.14 6.62 -3.09 -0.02 1.12 16 7 C -0.12 -1.13 3.54 -90.14 -0.32 -1.45 16 8 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 9 C 0.52 6.63 7.06 -10.99 -0.08 6.56 16 10 O -0.54 -8.78 15.18 5.55 0.08 -8.70 16 11 N -0.71 -9.17 5.16 -52.03 -0.27 -9.44 16 12 C 0.13 2.27 2.84 -66.09 -0.19 2.08 16 13 H 0.09 1.75 7.26 -51.93 -0.38 1.37 16 14 C -0.15 -2.87 6.77 -24.58 -0.17 -3.04 16 15 C 0.15 3.60 5.89 -2.53 -0.01 3.59 16 16 N -0.60 -14.38 3.13 -162.57 -0.51 -14.88 16 17 C -0.22 -5.88 9.88 -15.06 -0.15 -6.03 16 18 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -26.22 10.09 55.49 0.56 -25.66 16 21 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.15 2.96 3.48 -66.95 -0.23 2.73 16 26 H 0.04 0.66 7.72 -51.93 -0.40 0.26 16 27 C -0.16 -2.78 9.14 37.16 0.34 -2.44 16 28 C -0.15 -1.29 6.40 -26.74 -0.17 -1.46 16 29 C 0.52 5.84 8.02 -10.86 -0.09 5.76 16 30 O -0.54 -7.79 17.59 5.55 0.10 -7.69 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.73 7.92 -51.93 -0.41 0.32 16 38 H 0.09 0.86 7.44 -51.93 -0.39 0.47 16 39 H 0.09 0.98 7.01 -51.93 -0.36 0.62 16 40 H 0.40 4.20 8.37 -40.82 -0.34 3.86 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.11 2.89 5.88 -51.93 -0.31 2.58 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.05 1.03 8.03 -51.93 -0.42 0.61 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.11 1.01 7.89 -51.93 -0.41 0.60 16 50 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -33.19 403.03 -8.15 -41.34 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.45 Total: 2.52 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 0.14 Total: 9.84 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.71 Total: -56.34 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.17 Total: -20.00 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.19 -8.15 -41.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088602078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.235 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds