Wall clock time and date at job start Sat Apr 11 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99953 * 2 1 4 4 C 1.53000 * 109.46967 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46846 * 65.00346 * 4 3 2 6 6 C 1.46821 * 124.33373 * 270.01235 * 5 4 3 7 7 C 1.54477 * 105.44573 * 163.00372 * 6 5 4 8 8 H 1.09005 * 110.96958 * 267.23116 * 7 6 5 9 9 C 1.50702 * 110.97482 * 143.50649 * 7 6 5 10 10 O 1.21284 * 119.99441 * 3.09171 * 9 7 6 11 11 N 1.34773 * 120.00146 * 183.08786 * 9 7 6 12 12 C 1.46504 * 119.99769 * 179.97438 * 11 9 7 13 13 H 1.09003 * 110.78034 * 328.24330 * 12 11 9 14 14 C 1.55160 * 110.71884 * 91.48118 * 12 11 9 15 15 C 1.54909 * 101.58106 * 153.86675 * 14 12 11 16 16 N 1.47425 * 104.83141 * 322.98671 * 15 14 12 17 17 C 1.36933 * 125.64542 * 204.39474 * 16 15 14 18 18 H 1.08005 * 119.99541 * 179.69129 * 17 16 15 19 19 C 1.38813 * 120.00564 * 359.69503 * 17 16 15 20 20 N 1.31616 * 119.99514 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00305 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47103 * 60.00082 * 21 19 17 23 23 H 1.48502 * 109.47327 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47083 * 299.99999 * 21 19 17 25 25 C 1.47026 * 108.70074 * 24.13120 * 16 15 14 26 26 H 1.08994 * 109.88320 * 239.52037 * 25 16 15 27 27 C 1.53004 * 109.88078 * 118.35859 * 25 16 15 28 28 C 1.54631 * 101.80080 * 25.37142 * 7 6 5 29 29 C 1.34421 * 124.35303 * 89.97421 * 5 4 3 30 30 O 1.21285 * 124.93602 * 0.44645 * 29 5 4 31 31 H 1.09005 * 109.47554 * 59.99832 * 1 2 3 32 32 H 1.08999 * 109.47252 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46889 * 299.99545 * 1 2 3 34 34 H 1.09000 * 109.47103 * 60.00272 * 3 2 1 35 35 H 1.08998 * 109.47133 * 300.00241 * 3 2 1 36 36 H 1.08995 * 109.47415 * 305.00703 * 4 3 2 37 37 H 1.09000 * 109.47325 * 185.00134 * 4 3 2 38 38 H 1.08999 * 110.28375 * 44.00077 * 6 5 4 39 39 H 1.09004 * 110.23858 * 281.97793 * 6 5 4 40 40 H 0.96990 * 120.00428 * 359.97438 * 11 9 7 41 41 H 1.09006 * 111.00068 * 271.93683 * 14 12 11 42 42 H 1.08996 * 111.00195 * 35.78667 * 14 12 11 43 43 H 1.08996 * 110.36158 * 204.14752 * 15 14 12 44 44 H 1.09002 * 110.36956 * 81.83034 * 15 14 12 45 45 H 0.97002 * 119.99999 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.46790 * 61.44844 * 27 25 16 47 47 H 1.08999 * 109.46948 * 181.44879 * 27 25 16 48 48 H 1.08998 * 109.46799 * 301.45203 * 27 25 16 49 49 H 1.08991 * 110.49218 * 93.89830 * 28 7 6 50 50 H 1.09004 * 110.48879 * 216.54845 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9755 0.5645 -1.2528 6 6 4.1375 -0.8816 -1.4485 7 6 4.1797 -1.0874 -2.9789 8 1 3.1851 -1.2993 -3.3716 9 6 5.1471 -2.1819 -3.3495 10 8 5.7221 -2.8027 -2.4807 11 7 5.3732 -2.4708 -4.6464 12 6 6.3142 -3.5344 -5.0066 13 1 7.1160 -3.6066 -4.2717 14 6 5.5781 -4.8926 -5.1513 15 6 6.5052 -5.6451 -6.1383 16 7 6.9729 -4.6112 -7.0795 17 6 7.4084 -4.8346 -8.3584 18 1 7.7272 -4.0055 -8.9727 19 6 7.4401 -6.1265 -8.8652 20 7 7.0520 -7.1368 -8.1163 21 14 8.0336 -6.4310 -10.6100 22 1 9.4346 -5.9578 -10.7460 23 1 7.9715 -7.8846 -10.9074 24 1 7.1670 -5.6927 -11.5635 25 6 6.8882 -3.3000 -6.4198 26 1 6.2266 -2.6430 -6.9843 27 6 8.2821 -2.6775 -6.3186 28 6 4.6867 0.2886 -3.4692 29 6 4.2822 1.2461 -2.3701 30 8 4.2412 2.4532 -2.4805 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.6886 1.8464 0.8900 35 1 1.6885 1.8464 -0.8899 36 1 3.8514 0.5682 0.8408 37 1 3.9785 2.1765 0.0889 38 1 3.2915 -1.4181 -1.0189 39 1 5.0694 -1.2212 -0.9965 40 1 4.9131 -1.9746 -5.3412 41 1 5.5234 -5.4112 -4.1941 42 1 4.5841 -4.7549 -5.5767 43 1 5.9476 -6.4169 -6.6688 44 1 7.3494 -6.0837 -5.6064 45 1 7.0738 -8.0396 -8.4706 46 1 8.6864 -2.5271 -7.3196 47 1 8.2152 -1.7180 -5.8058 48 1 8.9378 -3.3439 -5.7583 49 1 5.7704 0.2768 -3.5851 50 1 4.2046 0.5604 -4.4083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088602078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:22 Heat of formation + Delta-G solvation = -107.631515 kcal Electronic energy + Delta-G solvation = -30259.315130 eV Core-core repulsion = 26093.571186 eV Total energy + Delta-G solvation = -4165.743944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.90640 -40.63530 -39.17115 -38.77736 -37.23665 -35.58888 -34.47933 -33.65186 -32.01388 -30.75622 -29.99763 -28.70442 -27.27606 -26.56884 -25.81288 -24.39123 -23.70599 -22.03901 -21.51502 -20.95196 -20.44167 -18.72868 -18.45204 -18.14227 -17.44973 -17.41138 -16.77916 -16.69794 -16.50447 -16.19744 -15.86982 -15.69283 -15.57336 -15.28566 -14.85886 -14.72847 -14.30899 -14.12820 -14.07787 -13.92680 -13.63497 -13.31589 -13.20564 -13.09227 -12.90773 -12.86926 -12.71076 -12.59035 -12.46215 -12.37184 -12.20537 -12.08027 -12.03379 -11.98626 -11.54190 -11.39336 -11.16252 -10.75718 -10.69029 -10.62077 -9.98113 -9.74780 -8.86548 -7.72342 -5.16793 1.47196 1.49803 1.52181 1.58238 1.59863 1.86116 2.19502 2.54259 2.84328 3.20955 3.35763 3.38495 3.61458 3.80548 3.88976 3.91624 4.01030 4.04377 4.15144 4.22111 4.28209 4.34608 4.51281 4.53144 4.55052 4.57312 4.61242 4.66688 4.67814 4.73733 4.79830 4.83931 4.85930 4.90902 4.97177 4.99492 5.10332 5.18035 5.40123 5.49006 5.53258 5.64464 5.66737 5.84222 6.01618 6.21316 6.34174 6.59032 7.07194 7.14314 7.26147 7.82522 8.45562 9.29186 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023095 B = 0.002188 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.107229 B =12792.555899 C =13307.333318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.047 3.953 4 C 0.122 3.878 5 N -0.608 5.608 6 C 0.124 3.876 7 C -0.108 4.108 8 H 0.145 0.855 9 C 0.530 3.470 10 O -0.573 6.573 11 N -0.699 5.699 12 C 0.153 3.847 13 H 0.082 0.918 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.614 5.614 17 C -0.225 4.225 18 H 0.084 0.916 19 C -0.070 4.070 20 N -0.951 5.951 21 Si 0.976 3.024 22 H -0.281 1.281 23 H -0.298 1.298 24 H -0.275 1.275 25 C 0.150 3.850 26 H 0.055 0.945 27 C -0.147 4.147 28 C -0.138 4.138 29 C 0.514 3.486 30 O -0.574 6.574 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.416 0.584 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.076 0.924 44 H -0.017 1.017 45 H 0.245 0.755 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.033 0.967 49 H 0.111 0.889 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 17.089 15.933 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.031 4.031 4 C 0.000 4.000 5 N -0.341 5.341 6 C 0.001 3.999 7 C -0.129 4.129 8 H 0.163 0.837 9 C 0.316 3.684 10 O -0.452 6.452 11 N -0.350 5.350 12 C 0.047 3.953 13 H 0.100 0.900 14 C -0.177 4.177 15 C 0.030 3.970 16 N -0.339 5.339 17 C -0.354 4.354 18 H 0.102 0.898 19 C -0.262 4.262 20 N -0.601 5.601 21 Si 0.805 3.195 22 H -0.208 1.208 23 H -0.225 1.225 24 H -0.201 1.201 25 C 0.043 3.957 26 H 0.072 0.928 27 C -0.207 4.207 28 C -0.179 4.179 29 C 0.303 3.697 30 O -0.454 6.454 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.253 0.747 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.001 0.999 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.129 0.871 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.292 16.975 16.429 26.630 hybrid contribution 0.206 -0.334 -1.193 1.256 sum -12.086 16.642 15.236 25.596 Atomic orbital electron populations 1.22869 0.79823 1.03614 1.00545 1.87854 1.21074 1.28006 1.95550 1.23008 0.93721 0.85098 1.01255 1.21624 0.92643 1.00114 0.85589 1.48350 1.65450 1.07997 1.12271 1.21970 1.03927 0.79758 0.94214 1.22170 1.00926 0.92615 0.97235 0.83740 1.20458 0.82020 0.83730 0.82156 1.90720 1.51537 1.53510 1.49440 1.45807 1.44588 1.36938 1.07698 1.21708 0.91480 0.86609 0.95526 0.90026 1.23197 0.99212 0.96213 0.99106 1.21678 0.93862 0.92339 0.89121 1.44718 1.76005 1.02149 1.11072 1.19339 1.34712 0.92898 0.88468 0.89783 1.25585 1.02915 0.95573 1.02102 1.70035 1.54856 0.98548 1.36630 0.85179 0.78191 0.76162 0.79958 1.20762 1.22455 1.20113 1.21225 0.95619 0.87815 0.91054 0.92781 1.22134 0.97669 0.99880 1.00985 1.22364 1.04680 0.91386 0.99422 1.21165 0.75537 0.87885 0.85075 1.90708 1.55993 1.15205 1.83515 0.94018 0.88792 0.92957 0.90149 0.94077 0.87850 0.88259 0.88279 0.90419 0.74697 0.91471 0.90868 0.90592 0.99890 0.94509 0.93643 0.90937 0.94742 0.87057 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.05 9.89 -148.98 -1.47 -7.52 16 3 C 0.05 0.60 6.28 71.98 0.45 1.05 16 4 C 0.12 1.69 6.32 86.38 0.55 2.23 16 5 N -0.61 -10.56 2.88 -817.84 -2.36 -12.92 16 6 C 0.12 2.08 6.62 86.82 0.57 2.66 16 7 C -0.11 -1.62 3.54 -10.48 -0.04 -1.66 16 8 H 0.14 1.50 8.14 -2.38 -0.02 1.48 16 9 C 0.53 11.97 7.06 87.66 0.62 12.59 16 10 O -0.57 -17.80 15.18 -3.04 -0.05 -17.84 16 11 N -0.70 -15.91 5.16 -436.91 -2.26 -18.17 16 12 C 0.15 4.93 2.84 46.18 0.13 5.06 16 13 H 0.08 2.92 7.26 -2.39 -0.02 2.91 16 14 C -0.14 -5.07 6.77 31.99 0.22 -4.85 16 15 C 0.16 7.54 5.89 86.85 0.51 8.05 16 16 N -0.61 -29.69 3.13 -668.26 -2.09 -31.78 16 17 C -0.23 -11.98 9.88 84.03 0.83 -11.15 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 20 N -0.95 -55.82 10.09 21.65 0.22 -55.61 16 21 Si 0.98 44.75 29.55 68.60 2.03 46.78 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 C 0.15 5.47 3.48 45.34 0.16 5.63 16 26 H 0.05 1.82 7.72 -2.39 -0.02 1.80 16 27 C -0.15 -5.04 9.14 71.98 0.66 -4.38 16 28 C -0.14 -2.04 6.40 30.59 0.20 -1.85 16 29 C 0.51 10.61 8.02 87.90 0.71 11.31 16 30 O -0.57 -16.09 17.59 -3.04 -0.05 -16.14 16 31 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.37 7.92 -2.39 -0.02 1.35 16 38 H 0.10 1.60 7.44 -2.39 -0.02 1.58 16 39 H 0.08 1.56 7.01 -2.38 -0.02 1.55 16 40 H 0.42 7.03 8.37 -92.72 -0.78 6.26 16 41 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.08 4.20 5.88 -2.39 -0.01 4.19 16 44 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 45 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.04 1.62 8.03 -2.38 -0.02 1.60 16 47 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.11 1.70 7.89 -2.39 -0.02 1.68 16 50 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -73.66 403.03 1.40 -72.25 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.16 Total: 18.11 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 7.27 Total: 22.84 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -6.48 Total: -118.48 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.57 Total: -41.50 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -73.66 1.40 -72.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088602078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.378 kcal (2) G-P(sol) polarization free energy of solvation -73.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds