Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 119.99670 * 2 1 4 4 N 1.34776 * 120.00237 * 180.02562 * 2 1 3 5 5 C 1.47151 * 120.97989 * 0.02562 * 4 2 1 6 6 C 1.53296 * 108.38443 * 230.51278 * 5 4 2 7 7 O 1.42964 * 109.21989 * 307.69910 * 6 5 4 8 8 C 1.42958 * 114.16958 * 62.58074 * 7 6 5 9 9 H 1.09000 * 109.55767 * 57.36322 * 8 7 6 10 10 C 1.50699 * 109.51615 * 177.49692 * 8 7 6 11 11 O 1.21277 * 119.99887 * 4.73795 * 10 8 7 12 12 N 1.34778 * 120.00021 * 184.75014 * 10 8 7 13 13 C 1.46497 * 119.99685 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47096 * 179.97438 * 13 12 10 15 15 H 1.08997 * 110.92052 * 51.09623 * 14 13 12 16 16 C 1.54909 * 111.00221 * 287.19549 * 14 13 12 17 17 N 1.47426 * 104.83381 * 204.91626 * 16 14 13 18 18 C 1.36939 * 125.64917 * 204.16150 * 17 16 14 19 19 H 1.08001 * 119.99881 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99940 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00066 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00060 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46743 * 59.99931 * 22 20 18 24 24 H 1.48495 * 109.47245 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46854 * 300.00070 * 22 20 18 26 26 C 1.47018 * 108.70104 * 24.12870 * 17 16 14 27 27 C 1.54322 * 107.27336 * 358.94171 * 26 17 16 28 28 H 1.09002 * 110.71963 * 96.17078 * 27 26 17 29 29 C 1.53001 * 110.71941 * 219.26699 * 27 26 17 30 30 C 1.47155 * 120.98147 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.46632 * 239.99575 * 1 2 3 32 32 H 1.08998 * 109.47465 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.47248 * 120.00011 * 1 2 3 34 34 H 1.08998 * 109.68427 * 350.23863 * 5 4 2 35 35 H 1.08999 * 109.68221 * 110.78920 * 5 4 2 36 36 H 1.09005 * 109.51278 * 67.61984 * 6 5 4 37 37 H 1.08995 * 109.51470 * 187.72524 * 6 5 4 38 38 H 0.96998 * 120.00195 * 359.97438 * 12 10 8 39 39 H 1.08999 * 109.47743 * 59.99923 * 13 12 10 40 40 H 1.08996 * 109.47590 * 299.99690 * 13 12 10 41 41 H 1.08998 * 110.36917 * 86.07337 * 16 14 13 42 42 H 1.09009 * 110.46209 * 323.79974 * 16 14 13 43 43 H 0.96994 * 120.00360 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.88222 * 239.52595 * 26 17 16 45 45 H 1.09004 * 109.88300 * 118.35961 * 26 17 16 46 46 H 1.09004 * 109.47208 * 56.16246 * 29 27 26 47 47 H 1.09004 * 109.46995 * 176.15808 * 29 27 26 48 48 H 1.08998 * 109.47298 * 296.15352 * 29 27 26 49 49 H 1.08993 * 109.68041 * 9.76392 * 30 4 2 50 50 H 1.08998 * 109.71045 * 249.22763 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4671 -2.4540 -0.0017 6 6 2.0411 -3.3262 1.1207 7 8 3.4632 -3.3888 0.9876 8 6 4.1198 -2.1261 1.1217 9 1 3.8717 -1.6866 2.0879 10 6 5.6110 -2.3213 1.0255 11 8 6.0640 -3.4176 0.7730 12 7 6.4412 -1.2776 1.2204 13 6 7.8908 -1.4676 1.1274 14 6 8.5975 -0.1358 1.3880 15 1 8.2385 0.3214 2.3100 16 6 8.4264 0.8278 0.1873 17 7 9.5810 1.7409 0.2686 18 6 9.6371 3.0052 -0.2546 19 1 8.7854 3.4100 -0.7810 20 6 10.7887 3.7664 -0.1082 21 7 11.8268 3.2728 0.5328 22 14 10.8650 5.4913 -0.8213 23 1 9.8019 6.3276 -0.2085 24 1 12.1935 6.0882 -0.5318 25 1 10.6604 5.4289 -2.2908 26 6 10.6619 1.0696 1.0051 27 6 10.1376 -0.3207 1.4220 28 1 10.4506 -1.0813 0.7067 29 6 10.6128 -0.6779 2.8318 30 6 3.6523 -1.1923 -0.0011 31 1 -0.3633 -0.5139 0.8900 32 1 -0.3634 1.0276 0.0005 33 1 -0.3634 -0.5138 -0.8900 34 1 0.4045 -2.2845 0.1720 35 1 1.6080 -2.9510 -0.9614 36 1 1.7847 -2.8916 2.0869 37 1 1.6236 -4.3306 1.0509 38 1 6.0789 -0.4008 1.4222 39 1 8.1473 -1.8254 0.1302 40 1 8.2097 -2.1997 1.8692 41 1 7.4944 1.3857 0.2783 42 1 8.4461 0.2741 -0.7515 43 1 12.6313 3.8048 0.6354 44 1 10.9221 1.6486 1.8911 45 1 11.5353 0.9589 0.3623 46 1 10.3007 0.1001 3.5285 47 1 10.1762 -1.6306 3.1318 48 1 11.6998 -0.7580 2.8395 49 1 4.0366 -0.1874 0.1730 50 1 4.0132 -1.5622 -0.9607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093170451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = -85.878057 kcal Electronic energy + Delta-G solvation = -30389.014102 eV Core-core repulsion = 26224.213459 eV Total energy + Delta-G solvation = -4164.800643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.96867 -39.67685 -38.50036 -37.81536 -35.25692 -34.66844 -33.07610 -32.40068 -30.71536 -30.35730 -29.48803 -27.95074 -25.97344 -25.31862 -24.72355 -23.26722 -22.49812 -20.71038 -20.00641 -19.76410 -19.21472 -17.86803 -17.25201 -17.20013 -16.69537 -16.52141 -16.03214 -15.64669 -15.55519 -15.13587 -14.71150 -14.57298 -14.23436 -13.98975 -13.76973 -13.75564 -13.36675 -13.15449 -13.02142 -12.84076 -12.62134 -12.52149 -12.42857 -12.06601 -11.79322 -11.66804 -11.38747 -11.36017 -11.19684 -10.78868 -10.75728 -10.68700 -10.29185 -10.16583 -10.00739 -9.97681 -9.88650 -9.66635 -9.52828 -9.08264 -9.00466 -8.57686 -6.80847 -5.68819 -3.02258 2.17645 2.28410 2.59057 2.60934 3.42823 3.46984 3.48129 3.67178 4.07892 4.16739 4.35395 4.47629 4.51099 4.52242 4.67630 4.70452 4.75009 4.89509 5.05031 5.09093 5.10394 5.20738 5.22511 5.33067 5.38392 5.44083 5.54766 5.57625 5.75897 5.82396 5.86598 6.02887 6.09218 6.19502 6.28772 6.36933 6.49354 6.55378 6.59475 6.63783 6.76883 6.85914 6.95394 7.43392 7.59084 7.66042 7.71177 7.85845 8.12223 8.28482 9.24707 9.84923 10.50895 11.42750 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012137 B = 0.002753 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.401606 B =10167.680775 C =12191.426512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.512 3.488 3 O -0.534 6.534 4 N -0.619 5.619 5 C 0.070 3.930 6 C 0.046 3.954 7 O -0.348 6.348 8 C 0.062 3.938 9 H 0.089 0.911 10 C 0.521 3.479 11 O -0.518 6.518 12 N -0.719 5.719 13 C 0.134 3.866 14 C -0.113 4.113 15 H 0.081 0.919 16 C 0.141 3.859 17 N -0.606 5.606 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.184 3.816 27 C -0.110 4.110 28 H 0.068 0.932 29 C -0.134 4.134 30 C 0.088 3.912 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.403 0.597 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.019 0.981 43 H 0.252 0.748 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.053 0.947 47 H 0.044 0.956 48 H 0.054 0.946 49 H 0.111 0.889 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.073 -13.903 3.325 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.302 3.698 3 O -0.410 6.410 4 N -0.355 5.355 5 C -0.053 4.053 6 C -0.032 4.032 7 O -0.266 6.266 8 C 0.000 4.000 9 H 0.107 0.893 10 C 0.304 3.696 11 O -0.393 6.393 12 N -0.372 5.372 13 C 0.011 3.989 14 C -0.133 4.133 15 H 0.099 0.901 16 C 0.015 3.985 17 N -0.332 5.332 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.059 3.941 27 C -0.130 4.130 28 H 0.086 0.914 29 C -0.192 4.192 30 C -0.036 4.036 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.238 0.762 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.129 0.871 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.144 -14.106 3.082 26.436 hybrid contribution -0.303 1.498 -0.257 1.549 sum -22.447 -12.609 2.825 25.901 Atomic orbital electron populations 1.21945 0.91301 1.05828 1.04136 1.20912 0.90783 0.82735 0.75420 1.90782 1.70620 1.30703 1.48929 1.48186 1.06444 1.06290 1.74601 1.22538 0.97557 0.84248 1.00964 1.23076 0.81405 1.01453 0.97275 1.88124 1.18260 1.27009 1.93176 1.22305 0.91743 0.86287 0.99660 0.89325 1.19799 0.87067 0.84958 0.77776 1.90735 1.77447 1.24629 1.46491 1.46014 1.07563 1.11686 1.71951 1.21451 0.77398 0.97907 1.02152 1.22686 0.96277 0.93965 1.00353 0.90077 1.21596 0.91817 0.91133 0.93993 1.44448 1.10794 1.12992 1.64965 1.19019 0.99151 0.88745 1.28799 0.90527 1.24791 0.96214 0.98649 1.00759 1.69947 1.04225 1.36523 1.46287 0.86206 0.76737 0.84123 0.78748 1.21164 1.21621 1.21189 1.21223 0.90374 0.86418 0.96090 1.22439 0.93087 1.00696 0.96791 0.91399 1.21691 1.00938 1.00174 0.96362 1.22188 0.80319 1.01825 0.99239 0.89299 0.88663 0.89226 0.88270 0.89921 0.92291 0.86838 0.76244 0.91128 0.91397 0.94558 0.96308 0.93732 0.93305 0.94034 0.92749 0.93678 0.92704 0.87112 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 8.69 36.01 0.31 -0.51 16 2 C 0.51 4.87 7.82 -10.99 -0.09 4.79 16 3 O -0.53 -7.69 16.55 5.56 0.09 -7.60 16 4 N -0.62 -5.17 3.02 -172.25 -0.52 -5.69 16 5 C 0.07 0.35 6.54 -3.53 -0.02 0.33 16 6 C 0.05 0.27 6.99 37.31 0.26 0.53 16 7 O -0.35 -3.76 9.92 -55.07 -0.55 -4.31 16 8 C 0.06 0.65 3.19 -27.71 -0.09 0.56 16 9 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 10 C 0.52 6.98 7.18 -10.99 -0.08 6.90 16 11 O -0.52 -9.04 16.51 -14.28 -0.24 -9.28 16 12 N -0.72 -8.98 5.46 -60.30 -0.33 -9.31 16 13 C 0.13 1.91 5.13 -4.04 -0.02 1.89 16 14 C -0.11 -1.86 2.50 -88.47 -0.22 -2.08 16 15 H 0.08 1.31 8.05 -51.93 -0.42 0.90 16 16 C 0.14 2.84 6.65 -2.53 -0.02 2.82 16 17 N -0.61 -15.43 3.39 -170.07 -0.58 -16.01 16 18 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -27.22 10.31 55.49 0.57 -26.64 16 22 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.18 4.41 4.97 -3.07 -0.02 4.39 16 27 C -0.11 -1.99 3.01 -88.79 -0.27 -2.26 16 28 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 29 C -0.13 -2.08 9.15 37.16 0.34 -1.74 16 30 C 0.09 0.89 5.89 -3.51 -0.02 0.86 16 31 H 0.09 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.09 0.26 8.01 -51.93 -0.42 -0.16 16 34 H 0.10 0.19 6.05 -51.93 -0.31 -0.13 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.40 4.37 8.47 -40.82 -0.35 4.03 16 39 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.02 0.39 7.91 -51.92 -0.41 -0.02 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.05 1.29 7.04 -51.93 -0.37 0.93 16 45 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 46 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.11 1.22 7.08 -51.93 -0.37 0.85 16 50 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -36.87 398.96 -9.18 -46.05 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.45 Total: -0.15 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -0.17 Total: 9.57 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.85 Total: -57.65 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.69 Total: -21.18 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.87 -9.18 -46.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093170451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.828 kcal (2) G-P(sol) polarization free energy of solvation -36.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds