Wall clock time and date at job start Sat Apr 11 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.35041 * 2 1 4 4 C 1.54302 * 110.47792 * 237.78218 * 2 1 3 5 5 N 1.47897 * 107.08132 * 242.52987 * 4 2 1 6 6 C 1.46907 * 111.00042 * 214.00310 * 5 4 2 7 7 C 1.50703 * 109.47003 * 307.40156 * 6 5 4 8 8 O 1.21288 * 119.99753 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99574 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99690 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99754 * 359.97438 * 10 9 7 12 12 C 1.38953 * 120.00139 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99857 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00148 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46886 * 89.99850 * 14 12 10 16 16 H 1.48500 * 109.47108 * 209.99977 * 14 12 10 17 17 H 1.48500 * 109.46765 * 330.00063 * 14 12 10 18 18 C 1.48533 * 105.82459 * 334.51982 * 5 4 2 19 19 C 1.54598 * 110.31500 * 122.14300 * 2 1 3 20 20 H 1.08996 * 110.71976 * 22.33670 * 19 2 1 21 21 C 1.52997 * 110.72294 * 259.23558 * 19 2 1 22 22 N 1.46503 * 109.47254 * 177.44737 * 21 19 2 23 23 C 1.34776 * 120.00126 * 179.97438 * 22 21 19 24 24 O 1.21280 * 120.00268 * 0.02562 * 23 22 21 25 25 C 1.50706 * 119.99776 * 179.97438 * 23 22 21 26 26 H 1.09000 * 109.86580 * 56.00652 * 25 23 22 27 27 C 1.54098 * 109.87782 * 295.00103 * 25 23 22 28 28 C 1.54813 * 104.30472 * 238.47971 * 27 25 23 29 29 C 1.55227 * 101.98357 * 339.26359 * 28 27 25 30 30 O 1.43744 * 109.87636 * 177.16928 * 25 23 22 31 31 H 1.09005 * 109.47111 * 297.85589 * 1 2 3 32 32 H 1.08991 * 109.47337 * 57.85599 * 1 2 3 33 33 H 1.09004 * 109.46674 * 177.86234 * 1 2 3 34 34 H 1.09001 * 110.02881 * 123.09857 * 4 2 1 35 35 H 1.08992 * 109.94132 * 1.90994 * 4 2 1 36 36 H 1.09005 * 109.46743 * 67.39694 * 6 5 4 37 37 H 1.08997 * 109.47529 * 187.39728 * 6 5 4 38 38 H 0.96999 * 120.00435 * 359.97438 * 9 7 6 39 39 H 0.97001 * 120.00087 * 179.97438 * 13 12 10 40 40 H 1.09004 * 110.66499 * 280.77226 * 18 5 4 41 41 H 1.08998 * 110.66894 * 157.64347 * 18 5 4 42 42 H 1.08996 * 109.47729 * 57.44826 * 21 19 2 43 43 H 1.09002 * 109.47436 * 297.44737 * 21 19 2 44 44 H 0.96999 * 119.99633 * 359.97438 * 22 21 19 45 45 H 1.09002 * 110.48969 * 357.22307 * 27 25 23 46 46 H 1.09002 * 110.48612 * 119.73973 * 27 25 23 47 47 H 1.08999 * 110.90868 * 97.38351 * 28 27 25 48 48 H 1.09003 * 110.91016 * 220.99202 * 28 27 25 49 49 H 1.09002 * 110.51777 * 278.38206 * 29 28 27 50 50 H 1.09000 * 110.77540 * 155.50397 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0698 -0.7707 -1.2229 5 7 2.8327 -1.9272 -0.7055 6 6 3.9777 -2.2335 -1.5734 7 6 3.5037 -2.3826 -2.9962 8 8 2.3279 -2.2475 -3.2610 9 7 4.3866 -2.6660 -3.9743 10 6 3.9554 -2.8022 -5.2686 11 1 2.9082 -2.6827 -5.5042 12 6 4.8656 -3.0939 -6.2771 13 7 6.1397 -3.2398 -5.9902 14 14 4.2780 -3.2801 -8.0405 15 1 4.3257 -1.9606 -8.7200 16 1 5.1580 -4.2380 -8.7569 17 1 2.8832 -3.7897 -8.0461 18 6 3.2849 -1.5382 0.6548 19 6 2.0667 -0.7714 1.2276 20 1 1.3163 -1.4660 1.6049 21 6 2.5053 0.1982 2.3268 22 7 2.9512 -0.5606 3.4980 23 6 3.3860 0.0886 4.5961 24 8 3.4079 1.3011 4.6150 25 6 3.8442 -0.6921 5.8011 26 1 4.6360 -1.3843 5.5148 27 6 2.6585 -1.4717 6.4020 28 6 2.5606 -0.9561 7.8585 29 6 3.9810 -0.3746 8.0907 30 8 4.3210 0.2087 6.8146 31 1 -0.3633 0.4802 0.9086 32 1 -0.3633 0.5467 -0.8701 33 1 -0.3633 -1.0270 -0.0383 34 1 2.7243 -0.1270 -1.8107 35 1 1.2405 -1.1184 -1.8389 36 1 4.7044 -1.4231 -1.5156 37 1 4.4433 -3.1631 -1.2462 38 1 5.3271 -2.7737 -3.7626 39 1 6.7751 -3.4438 -6.6942 40 1 4.1575 -0.8874 0.5986 41 1 3.5007 -2.4216 1.2558 42 1 1.6662 0.8359 2.6051 43 1 3.3252 0.8160 1.9605 44 1 2.9334 -1.5303 3.4831 45 1 1.7410 -1.2509 5.8566 46 1 2.8605 -2.5428 6.3893 47 1 1.8029 -0.1774 7.9453 48 1 2.3557 -1.7750 8.5481 49 1 4.6815 -1.1689 8.3486 50 1 3.9640 0.3882 8.8692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101698844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:02 Heat of formation + Delta-G solvation = -142.911278 kcal Electronic energy + Delta-G solvation = -29535.165099 eV Core-core repulsion = 25367.891310 eV Total energy + Delta-G solvation = -4167.273789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.43949 -40.85409 -39.66157 -39.07266 -36.27123 -35.77825 -34.29868 -33.27376 -33.10354 -31.66368 -30.32717 -29.02507 -27.07272 -26.68350 -24.97959 -23.92598 -22.67661 -22.05087 -21.65389 -21.17934 -20.62965 -19.81259 -18.60635 -17.78144 -17.57463 -17.27541 -16.88696 -16.58855 -16.44754 -16.24994 -15.91387 -15.74207 -15.43888 -15.28560 -14.87891 -14.65965 -14.56362 -14.49377 -14.33793 -13.74925 -13.59141 -13.47522 -13.39192 -13.04534 -12.89924 -12.75613 -12.64304 -12.47573 -12.41298 -12.22820 -12.17081 -12.08537 -11.88347 -11.72299 -11.67667 -11.54498 -11.46810 -11.13204 -10.50515 -10.22670 -10.14504 -10.01792 -9.32262 -8.47750 -5.96364 1.36780 1.40709 1.53424 1.53622 1.91838 2.03453 2.27684 2.84288 3.04103 3.19111 3.30470 3.49263 3.56788 3.64924 3.74389 3.85769 3.90803 4.05069 4.18691 4.26595 4.29089 4.32340 4.40874 4.44183 4.44410 4.54097 4.60697 4.64191 4.72434 4.74425 4.78772 4.80628 4.90396 4.93300 5.01454 5.06420 5.11363 5.15743 5.23249 5.30528 5.36881 5.40251 5.47158 5.80761 5.86080 5.97794 6.10913 6.52349 6.59184 7.11642 7.20462 7.54445 8.09998 8.69691 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.001867 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.778241 B =14994.389495 C =15677.480216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.078 0.922 4 C 0.057 3.943 5 N -0.508 5.508 6 C 0.047 3.953 7 C 0.438 3.562 8 O -0.614 6.614 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.079 0.921 12 C -0.014 4.014 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.273 1.273 18 C 0.036 3.964 19 C -0.081 4.081 20 H 0.108 0.892 21 C 0.139 3.861 22 N -0.709 5.709 23 C 0.507 3.493 24 O -0.579 6.579 25 C 0.057 3.943 26 H 0.120 0.880 27 C -0.142 4.142 28 C -0.152 4.152 29 C 0.035 3.965 30 O -0.390 6.390 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.013 0.987 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.046 0.954 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.419 0.581 45 H 0.080 0.920 46 H 0.120 0.880 47 H 0.066 0.934 48 H 0.111 0.889 49 H 0.084 0.916 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 0.739 27.884 28.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.071 4.071 5 N -0.232 5.232 6 C -0.084 4.084 7 C 0.225 3.775 8 O -0.500 6.500 9 N -0.211 5.211 10 C -0.462 4.462 11 H 0.097 0.903 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.198 1.198 16 H -0.195 1.195 17 H -0.197 1.197 18 C -0.091 4.091 19 C -0.100 4.100 20 H 0.126 0.874 21 C 0.015 3.985 22 N -0.363 5.363 23 C 0.294 3.706 24 O -0.458 6.458 25 C -0.004 4.004 26 H 0.137 0.863 27 C -0.180 4.180 28 C -0.189 4.189 29 C -0.040 4.040 30 O -0.309 6.309 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.256 0.744 45 H 0.099 0.901 46 H 0.138 0.862 47 H 0.085 0.915 48 H 0.130 0.870 49 H 0.102 0.898 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.646 1.365 27.557 28.163 hybrid contribution 0.972 0.268 -1.395 1.721 sum -4.674 1.633 26.162 26.626 Atomic orbital electron populations 1.21756 0.93209 1.02117 1.02121 1.22070 0.97415 0.98814 0.93026 0.90340 1.22862 0.97999 0.90032 0.96218 1.64586 1.19439 1.36939 1.02227 1.22000 0.93268 1.03278 0.89880 1.20758 0.86366 0.82406 0.87937 1.90479 1.18509 1.56733 1.84293 1.41932 1.09949 1.62508 1.06706 1.19655 0.95115 1.47232 0.84153 0.90272 1.26044 0.95014 0.96332 1.03954 1.69673 1.02254 1.48507 1.35717 0.84927 0.78099 0.78416 0.76894 1.19754 1.19499 1.19733 1.23508 0.96324 0.99956 0.89308 1.22269 0.97652 0.96670 0.93428 0.87432 1.21250 0.99290 0.93770 0.84238 1.45779 1.65566 1.11321 1.13611 1.21097 0.76681 0.88006 0.84813 1.90708 1.55461 1.16424 1.83207 1.22850 0.98932 0.90816 0.87782 0.86260 1.23014 0.96841 1.01977 0.96186 1.23198 0.97125 1.02006 0.96603 1.23928 0.95795 0.98989 0.85333 1.88983 1.79783 1.46154 1.15954 0.90784 0.93163 0.92584 0.96829 0.91334 0.91887 0.86892 0.77076 0.91313 0.93553 0.87514 0.91274 0.92685 0.74391 0.90112 0.86188 0.91498 0.87044 0.89793 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.90 71.98 0.64 -2.16 16 2 C -0.09 -2.16 3.18 -9.81 -0.03 -2.20 16 3 H 0.08 1.76 7.85 -2.39 -0.02 1.74 16 4 C 0.06 1.89 4.75 86.55 0.41 2.30 16 5 N -0.51 -15.73 5.26 -886.94 -4.67 -20.40 16 6 C 0.05 1.63 5.48 85.56 0.47 2.09 16 7 C 0.44 20.80 7.35 87.66 0.64 21.45 16 8 O -0.61 -33.37 13.37 -3.05 -0.04 -33.41 16 9 N -0.57 -29.53 5.29 -306.98 -1.62 -31.16 16 10 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 11 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 12 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 13 N -0.92 -49.80 13.05 21.66 0.28 -49.52 16 14 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 18 C 0.04 0.75 5.81 86.65 0.50 1.25 16 19 C -0.08 -1.44 2.63 -9.59 -0.03 -1.46 16 20 H 0.11 1.65 7.86 -2.39 -0.02 1.63 16 21 C 0.14 2.43 4.99 86.38 0.43 2.87 16 22 N -0.71 -10.14 5.41 -463.05 -2.50 -12.64 16 23 C 0.51 10.40 6.95 87.66 0.61 11.01 16 24 O -0.58 -18.41 16.53 15.69 0.26 -18.15 16 25 C 0.06 0.81 3.84 30.22 0.12 0.92 16 26 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 27 C -0.14 -1.04 6.60 31.58 0.21 -0.83 16 28 C -0.15 -1.15 7.17 31.98 0.23 -0.92 16 29 C 0.04 0.38 7.72 72.75 0.56 0.95 16 30 O -0.39 -7.99 10.74 -130.26 -1.40 -9.39 16 31 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.01 0.50 7.59 -2.39 -0.02 0.48 16 35 H 0.07 2.77 6.29 -2.39 -0.02 2.75 16 36 H 0.06 2.00 7.89 -2.38 -0.02 1.98 16 37 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 39 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 40 H 0.05 0.98 7.69 -2.38 -0.02 0.96 16 41 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 1.17 8.05 -2.39 -0.02 1.15 16 44 H 0.42 3.19 8.41 -92.71 -0.78 2.41 16 45 H 0.08 0.65 7.69 -2.39 -0.02 0.63 16 46 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -78.95 401.47 -2.18 -81.13 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.56 Total: 31.52 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 6.05 Total: 16.94 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -8.51 Total: -113.71 kcal Atomic # 8 Polarization: -59.77 SS G_CDS: -1.18 Total: -60.95 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -78.95 -2.18 -81.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101698844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.781 kcal (2) G-P(sol) polarization free energy of solvation -78.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds