Wall clock time and date at job start Sat Apr 11 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.34780 * 125.65071 * 204.16323 * 5 4 2 7 7 O 1.21276 * 120.00253 * 179.97438 * 6 5 4 8 8 C 1.50704 * 119.99459 * 359.95684 * 6 5 4 9 9 H 1.08990 * 109.87163 * 303.98905 * 8 6 5 10 10 C 1.54096 * 109.87878 * 65.00308 * 8 6 5 11 11 C 1.54812 * 104.19149 * 121.44844 * 10 8 6 12 12 C 1.55002 * 102.08895 * 20.88019 * 11 10 8 13 13 H 1.08993 * 110.61854 * 81.47975 * 12 11 10 14 14 C 1.50705 * 110.61590 * 204.47567 * 12 11 10 15 15 N 1.34772 * 120.00111 * 295.00215 * 14 12 11 16 16 O 1.21279 * 119.99684 * 114.99770 * 14 12 11 17 17 O 1.43744 * 109.87334 * 182.82775 * 8 6 5 18 18 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 19 19 C 1.54322 * 107.27336 * 358.94171 * 18 5 4 20 20 H 1.09002 * 110.71963 * 96.17078 * 19 18 5 21 21 C 1.53001 * 110.71941 * 219.26699 * 19 18 5 22 22 C 1.52996 * 109.47434 * 291.15521 * 21 19 18 23 23 N 1.46497 * 109.47458 * 179.97438 * 22 21 19 24 24 C 1.36934 * 120.00422 * 179.97438 * 23 22 21 25 25 H 1.08007 * 119.99592 * 0.02562 * 24 23 22 26 26 C 1.38804 * 120.00415 * 180.02562 * 24 23 22 27 27 N 1.31621 * 119.99886 * 359.97438 * 26 24 23 28 28 Si 1.86808 * 120.00232 * 180.02562 * 26 24 23 29 29 H 1.48501 * 109.46691 * 359.97438 * 28 26 24 30 30 H 1.48500 * 109.46883 * 119.99640 * 28 26 24 31 31 H 1.48499 * 109.46749 * 239.99993 * 28 26 24 32 32 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 33 33 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 34 34 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 35 35 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 36 36 H 1.09003 * 110.36973 * 323.75054 * 4 2 1 37 37 H 1.09003 * 110.48897 * 240.12383 * 10 8 6 38 38 H 1.09006 * 110.49025 * 2.77249 * 10 8 6 39 39 H 1.09000 * 110.91015 * 139.07303 * 11 10 8 40 40 H 1.09001 * 110.90730 * 262.64729 * 11 10 8 41 41 H 0.97001 * 119.99786 * 359.97438 * 15 14 12 42 42 H 0.97000 * 120.00211 * 180.02562 * 15 14 12 43 43 H 1.08998 * 109.88222 * 239.52595 * 18 5 4 44 44 H 1.09005 * 110.01447 * 118.43174 * 18 5 4 45 45 H 1.08999 * 109.47061 * 51.15825 * 21 19 18 46 46 H 1.09006 * 109.46767 * 171.15478 * 21 19 18 47 47 H 1.08999 * 109.47244 * 300.00191 * 22 21 19 48 48 H 1.09005 * 109.46729 * 59.99925 * 22 21 19 49 49 H 0.96998 * 119.99716 * 0.02562 * 23 22 21 50 50 H 0.97002 * 120.00207 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4481 -1.5604 -1.5942 7 8 5.5134 -1.9080 -1.1305 8 6 4.2656 -1.4834 -3.0881 9 1 3.4200 -2.1011 -3.3904 10 6 4.0248 -0.0216 -3.5120 11 6 5.1702 0.2779 -4.5095 12 6 5.5926 -1.1451 -4.9556 13 1 4.9239 -1.5187 -5.7310 14 6 7.0205 -1.1481 -5.4376 15 7 7.3599 -0.4563 -6.5433 16 8 7.8641 -1.7730 -4.8304 17 8 5.4613 -1.9287 -3.7500 18 6 3.4675 -1.2742 0.6959 19 6 2.0862 -0.8080 1.2022 20 1 1.4468 -1.6633 1.4209 21 6 2.2349 0.0839 2.4364 22 6 2.7263 -0.7564 3.6167 23 7 2.8692 0.0978 4.7983 24 6 3.2986 -0.4384 5.9829 25 1 3.5323 -1.4910 6.0460 26 6 3.4335 0.3708 7.1026 27 7 3.1492 1.6536 7.0256 28 14 4.0200 -0.3606 8.7184 29 1 4.2714 -1.8135 8.5417 30 1 5.2753 0.3119 9.1394 31 1 2.9789 -0.1617 9.7585 32 1 -0.3633 0.4520 0.9229 33 1 -0.3633 0.5732 -0.8529 34 1 -0.3634 -1.0253 -0.0699 35 1 2.1559 -0.1720 -2.0837 36 1 1.4519 -1.6704 -1.4025 37 1 3.0562 0.0790 -4.0019 38 1 4.0875 0.6412 -2.6489 39 1 4.8061 0.8590 -5.3568 40 1 5.9938 0.7912 -4.0133 41 1 6.6851 0.0432 -7.0291 42 1 8.2789 -0.4585 -6.8538 43 1 4.2426 -0.5998 1.0598 44 1 3.6662 -2.2885 1.0422 45 1 2.9555 0.8748 2.2284 46 1 1.2699 0.5271 2.6827 47 1 2.0056 -1.5473 3.8247 48 1 3.6912 -1.1996 3.3703 49 1 2.6590 1.0430 4.7417 50 1 3.2438 2.2192 7.8080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104673505.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:29 Heat of formation + Delta-G solvation = -109.240866 kcal Electronic energy + Delta-G solvation = -29837.161961 eV Core-core repulsion = 25671.348230 eV Total energy + Delta-G solvation = -4165.813731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.09955 -40.02490 -38.77321 -37.60810 -35.16579 -34.26047 -33.49898 -32.49752 -32.07761 -30.82743 -29.90868 -27.23183 -26.62284 -25.16666 -23.87855 -22.77979 -22.20135 -21.02408 -20.73799 -20.14541 -19.65510 -18.20331 -17.79517 -17.10545 -16.96660 -16.73375 -16.48395 -15.67423 -15.13054 -15.02400 -14.80212 -14.67362 -14.41210 -14.30212 -13.98763 -13.82424 -13.29555 -13.20742 -13.08331 -12.92049 -12.79774 -12.55403 -12.31059 -12.26465 -11.99507 -11.78478 -11.54047 -11.43877 -11.15410 -11.03539 -10.83644 -10.72611 -10.61689 -10.44764 -10.26742 -10.17148 -10.15504 -9.92718 -9.66196 -9.63024 -8.83953 -8.74299 -6.88331 -5.73357 -3.01664 2.15810 2.34364 2.48462 2.89812 3.46526 3.52324 3.54610 3.57180 3.82065 4.09687 4.21969 4.27603 4.29068 4.43612 4.49536 4.60074 4.65569 4.68339 4.80012 4.96745 5.04681 5.08867 5.18598 5.21846 5.28086 5.30324 5.41819 5.47142 5.52684 5.60583 5.69990 5.78345 5.86772 5.97509 5.99290 6.00908 6.12311 6.19503 6.29851 6.35045 6.39642 6.40339 6.82419 6.86616 6.90902 7.35767 7.74635 7.82047 8.06286 8.45967 9.57024 10.15254 10.49627 11.49767 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.002090 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.170873 B =13393.405413 C =14499.763155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.096 3.904 5 N -0.617 5.617 6 C 0.523 3.477 7 O -0.510 6.510 8 C 0.063 3.937 9 H 0.099 0.901 10 C -0.146 4.146 11 C -0.142 4.142 12 C 0.055 3.945 13 H 0.102 0.898 14 C 0.521 3.479 15 N -0.853 5.853 16 O -0.511 6.511 17 O -0.316 6.316 18 C 0.112 3.888 19 C -0.089 4.089 20 H 0.087 0.913 21 C -0.114 4.114 22 C 0.151 3.849 23 N -0.734 5.734 24 C -0.237 4.237 25 H 0.071 0.929 26 C -0.016 4.016 27 N -0.935 5.935 28 Si 0.907 3.093 29 H -0.280 1.280 30 H -0.291 1.291 31 H -0.292 1.292 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.401 0.599 42 H 0.406 0.594 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.018 0.982 48 H 0.019 0.981 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 -0.250 -33.972 34.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.027 4.027 5 N -0.354 5.354 6 C 0.310 3.690 7 O -0.383 6.383 8 C 0.002 3.998 9 H 0.116 0.884 10 C -0.184 4.184 11 C -0.180 4.180 12 C -0.007 4.007 13 H 0.119 0.881 14 C 0.304 3.696 15 N -0.420 5.420 16 O -0.384 6.384 17 O -0.232 6.232 18 C -0.009 4.009 19 C -0.108 4.108 20 H 0.105 0.895 21 C -0.153 4.153 22 C 0.023 3.977 23 N -0.378 5.378 24 C -0.368 4.368 25 H 0.089 0.911 26 C -0.212 4.212 27 N -0.584 5.584 28 Si 0.738 3.262 29 H -0.205 1.205 30 H -0.219 1.219 31 H -0.219 1.219 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.229 0.771 42 H 0.238 0.762 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.961 -1.268 -33.022 33.283 hybrid contribution 0.077 0.357 0.473 0.598 sum -3.884 -0.911 -32.549 32.793 Atomic orbital electron populations 1.21700 0.93526 1.02136 1.02451 1.22422 0.96335 0.99544 0.93718 0.89420 1.22586 0.83380 0.98473 0.98228 1.48430 1.12036 1.67493 1.07407 1.19971 0.83309 0.78085 0.87666 1.90795 1.25496 1.45183 1.76860 1.22640 0.89613 0.96396 0.91173 0.88356 1.22993 0.99807 0.95021 1.00545 1.23140 0.99285 0.95658 0.99957 1.23051 0.94638 0.92495 0.90501 0.88051 1.20133 0.90012 0.78968 0.80521 1.43711 1.14767 1.53983 1.29501 1.90844 1.51177 1.41223 1.55112 1.89175 1.42571 1.57398 1.34101 1.22134 0.98374 1.02336 0.78100 1.22290 0.94966 0.98850 0.94703 0.89494 1.21727 1.01980 0.98080 0.93473 1.20688 0.97178 0.93248 0.86578 1.42365 1.80763 1.08477 1.06206 1.19295 1.36189 0.93761 0.87555 0.91127 1.24747 1.02593 0.95677 0.98190 1.69671 1.55441 1.03950 1.29317 0.86110 0.77983 0.78133 0.83967 1.20529 1.21855 1.21898 0.91500 0.92527 0.92349 0.90563 0.91062 0.88828 0.89133 0.88700 0.89446 0.77092 0.76211 0.90664 0.91119 0.91692 0.91281 0.96422 0.96274 0.78355 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.31 37.16 0.35 -0.65 16 2 C -0.10 -0.87 3.09 -88.47 -0.27 -1.14 16 3 H 0.09 0.78 8.05 -51.93 -0.42 0.37 16 4 C 0.10 0.73 6.07 -2.53 -0.02 0.72 16 5 N -0.62 -7.24 3.33 -170.52 -0.57 -7.81 16 6 C 0.52 7.30 7.01 -10.98 -0.08 7.22 16 7 O -0.51 -10.01 16.85 -14.02 -0.24 -10.24 16 8 C 0.06 0.61 3.27 -27.31 -0.09 0.52 16 9 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 10 C -0.15 -0.84 4.84 -25.20 -0.12 -0.97 16 11 C -0.14 -0.74 6.57 -24.72 -0.16 -0.90 16 12 C 0.05 0.42 3.76 -26.82 -0.10 0.31 16 13 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 14 C 0.52 4.94 7.48 -10.99 -0.08 4.86 16 15 N -0.85 -3.49 8.86 31.22 0.28 -3.22 16 16 O -0.51 -8.05 17.40 -13.51 -0.24 -8.28 16 17 O -0.32 -4.06 10.01 -64.30 -0.64 -4.70 16 18 C 0.11 1.52 5.73 -3.07 -0.02 1.51 16 19 C -0.09 -1.04 2.42 -88.79 -0.21 -1.25 16 20 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 21 C -0.11 -1.73 4.73 -26.73 -0.13 -1.86 16 22 C 0.15 3.03 6.13 -4.05 -0.02 3.01 16 23 N -0.73 -19.01 5.60 -59.91 -0.34 -19.35 16 24 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 25 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 26 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 27 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 28 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16 29 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 31 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 35 H 0.08 0.40 5.60 -51.93 -0.29 0.10 16 36 H 0.07 0.46 7.98 -51.93 -0.41 0.05 16 37 H 0.09 0.23 7.83 -51.93 -0.41 -0.18 16 38 H 0.09 0.63 7.45 -51.93 -0.39 0.24 16 39 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 40 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 41 H 0.40 0.13 8.83 -40.82 -0.36 -0.23 16 42 H 0.41 1.43 8.93 -40.82 -0.36 1.07 16 43 H 0.08 1.18 7.73 -51.93 -0.40 0.78 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.03 8.00 -51.93 -0.42 0.61 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.02 0.40 7.58 -51.93 -0.39 0.01 16 49 H 0.38 10.32 7.67 -40.82 -0.31 10.01 16 50 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 402.98 15.07 6.07 6.07 Total: -1.00 -41.33 402.98 -9.52 -50.86 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.35 Total: 2.95 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.21 Total: 3.81 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.10 Total: -58.44 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -1.12 Total: -23.23 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -41.33 -9.52 -50.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104673505.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.384 kcal (2) G-P(sol) polarization free energy of solvation -41.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds