Wall clock time and date at job start Sat Apr 11 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.34780 * 125.65071 * 204.16323 * 5 4 2 7 7 O 1.21276 * 120.00253 * 179.97438 * 6 5 4 8 8 C 1.50704 * 119.99459 * 359.95684 * 6 5 4 9 9 H 1.08990 * 109.87163 * 303.98905 * 8 6 5 10 10 C 1.54096 * 109.87878 * 65.00308 * 8 6 5 11 11 C 1.54812 * 104.19149 * 121.44844 * 10 8 6 12 12 C 1.55002 * 102.08895 * 20.88019 * 11 10 8 13 13 H 1.08993 * 110.61854 * 81.47975 * 12 11 10 14 14 C 1.50705 * 110.61590 * 204.47567 * 12 11 10 15 15 N 1.34772 * 120.00111 * 295.00215 * 14 12 11 16 16 O 1.21279 * 119.99684 * 114.99770 * 14 12 11 17 17 O 1.43744 * 109.87334 * 182.82775 * 8 6 5 18 18 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 19 19 C 1.54322 * 107.27336 * 358.94171 * 18 5 4 20 20 H 1.09002 * 110.71963 * 96.17078 * 19 18 5 21 21 C 1.53001 * 110.71941 * 219.26699 * 19 18 5 22 22 C 1.52996 * 109.47434 * 291.15521 * 21 19 18 23 23 N 1.46497 * 109.47458 * 179.97438 * 22 21 19 24 24 C 1.36934 * 120.00422 * 179.97438 * 23 22 21 25 25 H 1.08007 * 119.99592 * 0.02562 * 24 23 22 26 26 C 1.38804 * 120.00415 * 180.02562 * 24 23 22 27 27 N 1.31621 * 119.99886 * 359.97438 * 26 24 23 28 28 Si 1.86808 * 120.00232 * 180.02562 * 26 24 23 29 29 H 1.48501 * 109.46691 * 359.97438 * 28 26 24 30 30 H 1.48500 * 109.46883 * 119.99640 * 28 26 24 31 31 H 1.48499 * 109.46749 * 239.99993 * 28 26 24 32 32 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 33 33 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 34 34 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 35 35 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 36 36 H 1.09003 * 110.36973 * 323.75054 * 4 2 1 37 37 H 1.09003 * 110.48897 * 240.12383 * 10 8 6 38 38 H 1.09006 * 110.49025 * 2.77249 * 10 8 6 39 39 H 1.09000 * 110.91015 * 139.07303 * 11 10 8 40 40 H 1.09001 * 110.90730 * 262.64729 * 11 10 8 41 41 H 0.97001 * 119.99786 * 359.97438 * 15 14 12 42 42 H 0.97000 * 120.00211 * 180.02562 * 15 14 12 43 43 H 1.08998 * 109.88222 * 239.52595 * 18 5 4 44 44 H 1.09005 * 110.01447 * 118.43174 * 18 5 4 45 45 H 1.08999 * 109.47061 * 51.15825 * 21 19 18 46 46 H 1.09006 * 109.46767 * 171.15478 * 21 19 18 47 47 H 1.08999 * 109.47244 * 300.00191 * 22 21 19 48 48 H 1.09005 * 109.46729 * 59.99925 * 22 21 19 49 49 H 0.96998 * 119.99716 * 0.02562 * 23 22 21 50 50 H 0.97002 * 120.00207 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4481 -1.5604 -1.5942 7 8 5.5134 -1.9080 -1.1305 8 6 4.2656 -1.4834 -3.0881 9 1 3.4200 -2.1011 -3.3904 10 6 4.0248 -0.0216 -3.5120 11 6 5.1702 0.2779 -4.5095 12 6 5.5926 -1.1451 -4.9556 13 1 4.9239 -1.5187 -5.7310 14 6 7.0205 -1.1481 -5.4376 15 7 7.3599 -0.4563 -6.5433 16 8 7.8641 -1.7730 -4.8304 17 8 5.4613 -1.9287 -3.7500 18 6 3.4675 -1.2742 0.6959 19 6 2.0862 -0.8080 1.2022 20 1 1.4468 -1.6633 1.4209 21 6 2.2349 0.0839 2.4364 22 6 2.7263 -0.7564 3.6167 23 7 2.8692 0.0978 4.7983 24 6 3.2986 -0.4384 5.9829 25 1 3.5323 -1.4910 6.0460 26 6 3.4335 0.3708 7.1026 27 7 3.1492 1.6536 7.0256 28 14 4.0200 -0.3606 8.7184 29 1 4.2714 -1.8135 8.5417 30 1 5.2753 0.3119 9.1394 31 1 2.9789 -0.1617 9.7585 32 1 -0.3633 0.4520 0.9229 33 1 -0.3633 0.5732 -0.8529 34 1 -0.3634 -1.0253 -0.0699 35 1 2.1559 -0.1720 -2.0837 36 1 1.4519 -1.6704 -1.4025 37 1 3.0562 0.0790 -4.0019 38 1 4.0875 0.6412 -2.6489 39 1 4.8061 0.8590 -5.3568 40 1 5.9938 0.7912 -4.0133 41 1 6.6851 0.0432 -7.0291 42 1 8.2789 -0.4585 -6.8538 43 1 4.2426 -0.5998 1.0598 44 1 3.6662 -2.2885 1.0422 45 1 2.9555 0.8748 2.2284 46 1 1.2699 0.5271 2.6827 47 1 2.0056 -1.5473 3.8247 48 1 3.6912 -1.1996 3.3703 49 1 2.6590 1.0430 4.7417 50 1 3.2438 2.2192 7.8080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104673505.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:28 Heat of formation + Delta-G solvation = -142.710078 kcal Electronic energy + Delta-G solvation = -29838.613295 eV Core-core repulsion = 25671.348230 eV Total energy + Delta-G solvation = -4167.265064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.87393 -40.86013 -39.60688 -38.62995 -36.90594 -34.90832 -34.78998 -33.53045 -33.08521 -31.94467 -31.06722 -28.55062 -27.33583 -26.30356 -25.23019 -23.97195 -23.05996 -21.93983 -21.61656 -21.06540 -20.58146 -19.18431 -18.83287 -18.39915 -17.75448 -17.49763 -17.37083 -16.71503 -16.47679 -16.03214 -15.72183 -15.69873 -15.50099 -15.43124 -15.14926 -14.93641 -14.57122 -14.41544 -14.27312 -13.87715 -13.63336 -13.52131 -13.14824 -13.00276 -12.93559 -12.81048 -12.63315 -12.62822 -12.46381 -12.26265 -12.08819 -11.99520 -11.92042 -11.66107 -11.54118 -11.45206 -11.18044 -10.96778 -10.95015 -10.73997 -10.57242 -9.74993 -9.03672 -7.99245 -5.28197 1.44035 1.44617 1.45500 1.50990 1.55636 1.61058 2.24707 2.52739 2.99040 3.23639 3.34121 3.47927 3.52211 3.62993 3.70712 3.74663 3.85103 4.02929 4.09547 4.13339 4.21504 4.32853 4.34104 4.42628 4.50336 4.55897 4.61257 4.67085 4.71569 4.77715 4.81708 4.89683 4.90201 4.94238 5.02666 5.04640 5.17042 5.21766 5.29730 5.34431 5.43919 5.46871 5.58311 5.59800 5.86337 6.24148 6.42530 6.45030 7.05946 7.29857 7.30677 8.05797 8.29465 9.24456 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.002090 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.170873 B =13393.405413 C =14499.763155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.086 0.914 4 C 0.095 3.905 5 N -0.612 5.612 6 C 0.510 3.490 7 O -0.588 6.588 8 C 0.065 3.935 9 H 0.136 0.864 10 C -0.140 4.140 11 C -0.135 4.135 12 C 0.049 3.951 13 H 0.149 0.851 14 C 0.512 3.488 15 N -0.823 5.823 16 O -0.592 6.592 17 O -0.371 6.371 18 C 0.111 3.889 19 C -0.079 4.079 20 H 0.098 0.902 21 C -0.099 4.099 22 C 0.148 3.852 23 N -0.747 5.747 24 C -0.249 4.249 25 H 0.071 0.929 26 C -0.076 4.076 27 N -0.968 5.968 28 Si 0.974 3.026 29 H -0.269 1.269 30 H -0.293 1.293 31 H -0.287 1.287 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.075 0.925 39 H 0.148 0.852 40 H 0.057 0.943 41 H 0.424 0.576 42 H 0.410 0.590 43 H 0.042 0.958 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.023 0.977 48 H 0.007 0.993 49 H 0.375 0.625 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 0.485 -37.353 38.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.104 0.896 4 C -0.026 4.026 5 N -0.346 5.346 6 C 0.299 3.701 7 O -0.468 6.468 8 C 0.004 3.996 9 H 0.153 0.847 10 C -0.177 4.177 11 C -0.173 4.173 12 C -0.011 4.011 13 H 0.166 0.834 14 C 0.297 3.703 15 N -0.390 5.390 16 O -0.471 6.471 17 O -0.289 6.289 18 C -0.013 4.013 19 C -0.098 4.098 20 H 0.116 0.884 21 C -0.137 4.137 22 C 0.022 3.978 23 N -0.390 5.390 24 C -0.380 4.380 25 H 0.089 0.911 26 C -0.269 4.269 27 N -0.619 5.619 28 Si 0.803 3.197 29 H -0.194 1.194 30 H -0.220 1.220 31 H -0.214 1.214 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.166 0.834 38 H 0.094 0.906 39 H 0.166 0.834 40 H 0.076 0.924 41 H 0.256 0.744 42 H 0.242 0.758 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.041 0.959 48 H 0.025 0.975 49 H 0.207 0.793 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.267 -0.496 -36.501 37.221 hybrid contribution 1.102 0.134 1.459 1.833 sum -6.165 -0.362 -35.042 35.582 Atomic orbital electron populations 1.21688 0.91590 1.03129 1.02973 1.22412 0.97716 0.98966 0.92042 0.89578 1.22940 0.80885 0.99892 0.98872 1.48518 1.13497 1.66334 1.06231 1.21115 0.82381 0.76507 0.90053 1.90749 1.28637 1.48866 1.78506 1.22896 0.89650 0.99819 0.87204 0.84688 1.23124 1.02541 0.91584 1.00475 1.23205 0.98288 0.94385 1.01398 1.23462 0.93869 0.93685 0.90058 0.83397 1.20769 0.90584 0.78190 0.80805 1.43501 1.15738 1.52073 1.27683 1.90810 1.53386 1.45013 1.57883 1.89138 1.44285 1.59138 1.36372 1.21971 0.98765 1.00363 0.80156 1.22186 0.94017 0.99108 0.94495 0.88426 1.21559 1.01623 0.97584 0.92966 1.20869 0.96784 0.93525 0.86658 1.42591 1.80608 1.08678 1.07132 1.19667 1.35595 0.93945 0.88839 0.91058 1.25594 1.03414 0.96191 1.01663 1.69814 1.56803 1.05134 1.30106 0.85062 0.77174 0.77830 0.79633 1.19357 1.21969 1.21424 0.92811 0.89930 0.91437 0.86779 0.88608 0.83437 0.90577 0.83403 0.92398 0.74376 0.75761 0.93957 0.93208 0.92757 0.90440 0.95903 0.97519 0.79325 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.31 71.98 0.67 -0.71 16 2 C -0.09 -1.32 3.09 -9.40 -0.03 -1.35 16 3 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 4 C 0.09 1.07 6.07 86.85 0.53 1.60 16 5 N -0.61 -14.04 3.33 -811.79 -2.70 -16.74 16 6 C 0.51 14.57 7.01 87.66 0.61 15.19 16 7 O -0.59 -25.23 16.85 15.70 0.26 -24.97 16 8 C 0.07 1.12 3.27 30.22 0.10 1.22 16 9 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 10 C -0.14 -1.02 4.84 31.58 0.15 -0.87 16 11 C -0.14 -0.92 6.57 31.90 0.21 -0.71 16 12 C 0.05 0.64 3.76 30.53 0.11 0.75 16 13 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 14 C 0.51 9.57 7.48 87.66 0.66 10.22 16 15 N -0.82 -5.24 8.86 -173.53 -1.54 -6.78 16 16 O -0.59 -20.05 17.40 15.21 0.26 -19.79 16 17 O -0.37 -9.52 10.01 -121.18 -1.21 -10.73 16 18 C 0.11 3.17 5.73 86.73 0.50 3.66 16 19 C -0.08 -1.79 2.42 -9.61 -0.02 -1.81 16 20 H 0.10 2.06 8.04 -2.39 -0.02 2.04 16 21 C -0.10 -3.05 4.73 30.59 0.14 -2.90 16 22 C 0.15 6.16 6.13 86.38 0.53 6.69 16 23 N -0.75 -39.85 5.60 -343.46 -1.92 -41.77 16 24 C -0.25 -14.63 9.99 84.03 0.84 -13.79 16 25 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 26 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 27 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 28 Si 0.97 47.91 29.55 68.60 2.03 49.93 16 29 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 30 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 31 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 0.59 8.07 -2.38 -0.02 0.57 16 35 H 0.11 0.50 5.60 -2.39 -0.01 0.48 16 36 H 0.10 0.73 7.98 -2.39 -0.02 0.71 16 37 H 0.15 -0.46 7.83 -2.39 -0.02 -0.47 16 38 H 0.08 0.83 7.45 -2.38 -0.02 0.81 16 39 H 0.15 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.06 0.75 8.05 -2.39 -0.02 0.73 16 41 H 0.42 -1.28 8.83 -92.71 -0.82 -2.10 16 42 H 0.41 2.43 8.93 -92.71 -0.83 1.61 16 43 H 0.04 1.47 7.73 -2.39 -0.02 1.45 16 44 H 0.05 1.59 8.14 -2.38 -0.02 1.58 16 45 H 0.05 1.78 8.00 -2.39 -0.02 1.76 16 46 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 47 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.01 0.30 7.58 -2.38 -0.02 0.28 16 49 H 0.37 20.85 7.67 -92.71 -0.71 20.14 16 50 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -101.54 402.98 -0.46 -101.99 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -1.39 Total: 16.16 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 5.47 Total: 13.11 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -5.88 Total: -125.71 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -0.68 Total: -55.49 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.93 kcal Total: -101.54 -0.46 -101.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104673505.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.717 kcal (2) G-P(sol) polarization free energy of solvation -101.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds