Wall clock time and date at job start Sat Apr 11 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00233 * 2 1 4 4 O 1.42896 * 109.47340 * 135.00307 * 3 2 1 5 5 C 1.42901 * 113.99813 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46651 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99481 * 179.97438 * 6 5 4 9 9 C 1.47027 * 125.64406 * 179.97438 * 8 6 5 10 10 C 1.54321 * 107.26617 * 178.90815 * 9 8 6 11 11 H 1.09005 * 110.72064 * 96.35188 * 10 9 8 12 12 C 1.53006 * 110.71843 * 219.44610 * 10 9 8 13 13 N 1.46901 * 109.47014 * 293.54624 * 12 10 9 14 14 C 1.46902 * 110.99983 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46978 * 180.02562 * 14 13 12 16 16 O 1.21295 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00244 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99708 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 359.71836 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72210 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72333 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72143 * 22 20 18 26 26 C 1.55151 * 102.94663 * 337.80988 * 10 9 8 27 27 H 1.09005 * 111.00606 * 277.42945 * 26 10 9 28 28 C 1.53003 * 111.00683 * 153.57675 * 26 10 9 29 29 C 1.47421 * 125.64984 * 359.96412 * 8 6 5 30 30 H 1.07998 * 119.99596 * 0.02562 * 1 2 3 31 31 H 1.07995 * 119.99929 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.00038 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.46904 * 14.99752 * 3 2 1 34 34 H 1.09003 * 109.46792 * 255.00264 * 3 2 1 35 35 H 1.08994 * 109.47353 * 59.99791 * 5 4 3 36 36 H 1.08998 * 109.46550 * 299.98987 * 5 4 3 37 37 H 1.09002 * 109.87786 * 59.49172 * 9 8 6 38 38 H 1.08992 * 109.88437 * 298.32885 * 9 8 6 39 39 H 1.09002 * 109.47001 * 173.54915 * 12 10 9 40 40 H 1.08992 * 109.47083 * 53.54606 * 12 10 9 41 41 H 1.00903 * 110.99970 * 303.95843 * 13 12 10 42 42 H 1.08999 * 109.46697 * 60.00741 * 14 13 12 43 43 H 1.08993 * 109.47253 * 300.00391 * 14 13 12 44 44 H 0.97004 * 119.99652 * 359.97438 * 17 15 14 45 45 H 0.97000 * 120.00371 * 0.28325 * 21 20 18 46 46 H 1.08998 * 109.46842 * 59.99987 * 28 26 10 47 47 H 1.09002 * 109.46908 * 180.02562 * 28 26 10 48 48 H 1.08998 * 109.46552 * 300.00190 * 28 26 10 49 49 H 1.08998 * 110.36629 * 322.99596 * 29 8 6 50 50 H 1.08997 * 110.36491 * 85.21098 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9078 2.4353 1.0327 6 6 4.9934 2.2571 2.0627 7 8 5.0892 1.2106 2.6680 8 7 5.8586 3.2605 2.3102 9 6 6.9594 3.2220 3.2842 10 6 7.6923 4.5776 3.2009 11 1 7.3313 5.2591 3.9712 12 6 9.2053 4.3830 3.3188 13 7 9.5329 3.8966 4.6657 14 6 10.9806 3.6973 4.8157 15 6 11.2775 3.1987 6.2065 16 8 10.3723 3.0268 6.9953 17 7 12.5490 2.9448 6.5742 18 6 12.8191 2.4907 7.8394 19 1 12.0130 2.3368 8.5414 20 6 14.1299 2.2284 8.2183 21 7 15.1102 2.4103 7.3622 22 14 14.4981 1.6103 9.9422 23 1 15.9608 1.4024 10.0918 24 1 14.0362 2.6123 10.9364 25 1 13.7897 0.3251 10.1690 26 6 7.3134 5.0912 1.7867 27 1 7.9570 4.6502 1.0254 28 6 7.3641 6.6192 1.7264 29 6 5.8580 4.5782 1.6492 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3856 2.1161 0.2659 34 1 2.4755 1.4867 -0.9927 35 1 3.2679 3.2694 1.3203 36 1 4.3581 2.6406 0.0615 37 1 7.6464 2.4132 3.0352 38 1 6.5610 3.0770 4.2883 39 1 9.7086 5.3338 3.1434 40 1 9.5367 3.6545 2.5789 41 1 9.1786 4.5235 5.3726 42 1 11.4966 4.6432 4.6507 43 1 11.3239 2.9639 4.0862 44 1 13.2730 3.0827 5.9435 45 1 14.9192 2.7317 6.4671 46 1 8.3725 6.9589 1.9631 47 1 7.0939 6.9524 0.7243 48 1 6.6618 7.0348 2.4489 49 1 5.5899 4.4751 0.5978 50 1 5.1664 5.2544 2.1518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105942980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:48 Heat of formation + Delta-G solvation = -91.986103 kcal Electronic energy + Delta-G solvation = -28614.786091 eV Core-core repulsion = 24449.720583 eV Total energy + Delta-G solvation = -4165.065508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.49191 -38.87846 -38.34513 -37.64181 -35.50570 -34.26215 -34.18505 -33.15112 -31.17364 -30.77194 -28.98502 -26.93853 -26.75352 -25.85576 -24.60958 -23.49725 -21.78841 -20.64691 -20.48800 -19.61461 -19.54071 -17.88904 -17.68261 -17.01974 -16.79877 -16.62860 -16.16605 -15.65134 -15.42030 -15.31178 -14.92746 -14.38026 -14.31233 -14.07390 -13.93167 -13.80238 -13.59791 -13.32512 -13.18009 -12.96035 -12.71613 -12.69434 -12.53789 -12.25557 -12.06577 -11.79508 -11.67054 -11.42848 -11.20086 -11.12575 -10.95094 -10.91725 -10.84393 -10.42495 -10.18576 -9.96720 -9.84504 -9.76736 -9.52510 -8.85619 -8.51357 -8.13389 -8.00951 -6.73465 -3.86472 1.67407 2.40505 2.46100 3.33206 3.37089 3.52766 3.57330 3.85430 3.90485 4.08350 4.15132 4.31808 4.43355 4.54392 4.60052 4.62733 4.68111 4.74061 4.87548 4.91607 4.96835 4.99129 5.00487 5.03465 5.11914 5.19993 5.26583 5.29774 5.41721 5.46562 5.53246 5.61944 5.67436 5.73027 5.82614 5.86125 5.96608 5.99748 6.04038 6.12275 6.12781 6.18255 6.63394 7.08415 7.25177 7.56263 7.82962 7.97544 8.10257 8.62122 8.82049 9.49635 9.89903 10.70036 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.001736 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.655257 B =16124.718832 C =17586.782146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.087 3.913 4 O -0.359 6.359 5 C 0.050 3.950 6 C 0.526 3.474 7 O -0.512 6.512 8 N -0.622 5.622 9 C 0.124 3.876 10 C -0.091 4.091 11 H 0.087 0.913 12 C 0.070 3.930 13 N -0.668 5.668 14 C 0.052 3.948 15 C 0.443 3.557 16 O -0.575 6.575 17 N -0.576 5.576 18 C -0.382 4.382 19 H 0.099 0.901 20 C -0.009 4.009 21 N -0.902 5.902 22 Si 1.091 2.909 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.100 4.100 27 H 0.089 0.911 28 C -0.142 4.142 29 C 0.101 3.899 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.350 0.650 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.375 0.625 45 H 0.261 0.739 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.476 8.565 -21.207 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.011 3.989 4 O -0.277 6.277 5 C -0.029 4.029 6 C 0.313 3.687 7 O -0.386 6.386 8 N -0.359 5.359 9 C 0.002 3.998 10 C -0.110 4.110 11 H 0.106 0.894 12 C -0.060 4.060 13 N -0.301 5.301 14 C -0.081 4.081 15 C 0.229 3.771 16 O -0.459 6.459 17 N -0.214 5.214 18 C -0.511 4.511 19 H 0.117 0.883 20 C -0.212 4.212 21 N -0.541 5.541 22 Si 0.917 3.083 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.120 4.120 27 H 0.107 0.893 28 C -0.199 4.199 29 C -0.022 4.022 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.169 0.831 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.208 0.792 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.955 6.471 -19.336 29.963 hybrid contribution -0.536 1.797 -1.676 2.515 sum -22.490 8.269 -21.012 31.870 Atomic orbital electron populations 1.23846 0.95474 1.02367 0.99917 1.22720 0.95636 0.98194 1.00298 1.21622 0.88697 0.96327 0.92281 1.88062 1.44326 1.34850 1.60509 1.22162 0.93075 0.89210 0.98503 1.19826 0.81979 0.83024 0.83921 1.90783 1.71741 1.26266 1.49797 1.48477 1.31822 1.14183 1.41382 1.21936 0.87510 0.97749 0.92571 1.22305 0.95521 0.96356 0.96863 0.89426 1.21957 0.93420 0.98447 0.92198 1.60046 1.12815 1.53904 1.03335 1.21655 0.88842 1.00027 0.97573 1.19734 0.83511 0.85012 0.88892 1.90536 1.44737 1.56972 1.53618 1.41936 1.06150 1.59324 1.14017 1.20543 0.96513 1.44269 0.89823 0.88326 1.26504 0.90808 0.96860 1.06989 1.70903 1.33357 1.43481 1.06347 0.83132 0.76275 0.76562 0.72297 1.20427 1.21043 1.20976 1.22395 0.95405 0.96633 0.97534 0.89302 1.21718 1.02691 0.93468 1.02040 1.22466 0.97755 0.84320 0.97668 0.88422 0.87625 0.86313 0.92546 0.92077 0.90331 0.90329 0.90455 0.90703 0.94861 0.90796 0.83059 0.93952 0.89665 0.79174 0.92808 0.91805 0.92239 0.92179 0.90705 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 14.31 29.01 0.42 -0.65 16 2 C -0.15 -1.13 9.89 -36.03 -0.36 -1.49 16 3 C 0.09 0.64 6.35 36.01 0.23 0.86 16 4 O -0.36 -4.05 9.86 -55.14 -0.54 -4.59 16 5 C 0.05 0.44 5.42 36.01 0.20 0.63 16 6 C 0.53 6.75 7.93 -10.98 -0.09 6.66 16 7 O -0.51 -9.35 16.83 -14.35 -0.24 -9.59 16 8 N -0.62 -6.60 3.33 -170.51 -0.57 -7.17 16 9 C 0.12 1.52 6.28 -3.06 -0.02 1.50 16 10 C -0.09 -0.85 2.60 -88.79 -0.23 -1.08 16 11 H 0.09 0.80 8.04 -51.93 -0.42 0.38 16 12 C 0.07 0.76 5.00 -3.82 -0.02 0.74 16 13 N -0.67 -10.34 5.93 -115.06 -0.68 -11.02 16 14 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 15 C 0.44 10.55 7.82 -10.99 -0.09 10.47 16 16 O -0.58 -15.95 15.78 5.54 0.09 -15.86 16 17 N -0.58 -14.66 5.28 -10.96 -0.06 -14.72 16 18 C -0.38 -10.91 9.68 -14.93 -0.14 -11.06 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C -0.01 -0.26 5.50 -17.47 -0.10 -0.35 16 21 N -0.90 -25.48 13.68 55.50 0.76 -24.72 16 22 Si 1.09 24.62 29.92 -169.99 -5.09 19.54 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.10 -0.65 3.09 -88.46 -0.27 -0.92 16 27 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 28 C -0.14 -0.70 9.31 37.16 0.35 -0.36 16 29 C 0.10 0.64 6.16 -2.52 -0.02 0.63 16 30 H 0.10 0.46 7.90 -52.49 -0.41 0.04 16 31 H 0.11 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 33 H 0.06 0.32 7.86 -51.93 -0.41 -0.09 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.46 7.84 -51.93 -0.41 0.06 16 37 H 0.08 1.11 7.77 -51.93 -0.40 0.71 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 41 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.38 8.78 6.73 -40.82 -0.27 8.51 16 45 H 0.26 7.07 6.78 -40.82 -0.28 6.79 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 48 H 0.06 0.29 8.07 -51.93 -0.42 -0.13 16 49 H 0.07 0.32 7.47 -51.93 -0.39 -0.07 16 50 H 0.07 0.39 7.99 -51.93 -0.41 -0.03 16 LS Contribution 416.86 15.07 6.28 6.28 Total: -1.00 -37.56 416.86 -8.62 -46.17 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -8.39 Total: 9.22 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.17 Total: 6.45 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.55 Total: -57.62 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.70 Total: -30.05 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.09 Total: 19.54 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -37.56 -8.62 -46.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105942980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.812 kcal (2) G-P(sol) polarization free energy of solvation -37.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds