Wall clock time and date at job start Sat Apr 11 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99791 * 2 1 4 4 N 1.34775 * 120.00007 * 180.02562 * 2 1 3 5 5 C 1.47172 * 120.98957 * 359.91282 * 4 2 1 6 6 C 1.53297 * 108.41287 * 230.54663 * 5 4 2 7 7 O 1.42958 * 109.22576 * 307.72406 * 6 5 4 8 8 C 1.42963 * 114.16829 * 62.57569 * 7 6 5 9 9 H 1.09006 * 109.54944 * 57.37407 * 8 7 6 10 10 C 1.50701 * 109.51325 * 177.49580 * 8 7 6 11 11 O 1.21279 * 119.99646 * 9.96108 * 10 8 7 12 12 N 1.34771 * 120.00020 * 189.96102 * 10 8 7 13 13 C 1.47490 * 127.03157 * 185.28775 * 12 10 8 14 14 C 1.54009 * 107.07971 * 154.52098 * 13 12 10 15 15 H 1.08992 * 110.32818 * 120.30382 * 14 13 12 16 16 C 1.53001 * 110.32438 * 242.41496 * 14 13 12 17 17 N 1.46503 * 109.47105 * 293.54792 * 16 14 13 18 18 C 1.36939 * 120.00079 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99770 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99933 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00253 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46839 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46988 * 119.99949 * 22 20 18 25 25 H 1.48501 * 109.47167 * 240.00146 * 22 20 18 26 26 C 1.54618 * 105.04500 * 1.30400 * 14 13 12 27 27 H 1.09003 * 110.73821 * 263.51369 * 26 14 13 28 28 C 1.53003 * 110.73607 * 140.36982 * 26 14 13 29 29 C 1.48114 * 127.03460 * 4.97619 * 12 10 8 30 30 C 1.47146 * 120.98216 * 179.97438 * 4 2 1 31 31 H 1.09008 * 109.46680 * 269.99083 * 1 2 3 32 32 H 1.08992 * 109.47390 * 29.99087 * 1 2 3 33 33 H 1.08994 * 109.47111 * 149.99497 * 1 2 3 34 34 H 1.09003 * 109.64643 * 110.82821 * 5 4 2 35 35 H 1.08995 * 109.71332 * 350.31171 * 5 4 2 36 36 H 1.08999 * 109.50882 * 187.79601 * 6 5 4 37 37 H 1.09001 * 109.51123 * 67.64733 * 6 5 4 38 38 H 1.08997 * 109.91095 * 273.87895 * 13 12 10 39 39 H 1.08994 * 109.91339 * 34.97013 * 13 12 10 40 40 H 1.09003 * 109.47048 * 53.54360 * 16 14 13 41 41 H 1.08995 * 109.47611 * 173.54592 * 16 14 13 42 42 H 0.97004 * 119.99786 * 0.02562 * 17 16 14 43 43 H 0.96992 * 120.00037 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.46894 * 59.99844 * 28 26 14 45 45 H 1.08995 * 109.46943 * 180.02562 * 28 26 14 46 46 H 1.08996 * 109.46757 * 300.00286 * 28 26 14 47 47 H 1.08998 * 110.66361 * 337.77006 * 29 12 10 48 48 H 1.09005 * 110.66235 * 100.88828 * 29 12 10 49 49 H 1.09000 * 109.68514 * 9.70819 * 30 4 2 50 50 H 1.09000 * 109.67963 * 249.18910 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4672 -2.4543 0.0008 6 6 2.0421 -3.3256 1.1234 7 8 3.4640 -3.3882 0.9894 8 6 4.1206 -2.1252 1.1220 9 1 3.8732 -1.6851 2.0881 10 6 5.6118 -2.3204 1.0250 11 8 6.0618 -3.3927 0.6806 12 7 6.4452 -1.3035 1.3210 13 6 7.9129 -1.2872 1.1766 14 6 8.3343 0.1843 1.0058 15 1 9.0166 0.4778 1.8035 16 6 8.9927 0.3935 -0.3593 17 7 10.2605 -0.3392 -0.4075 18 6 11.0312 -0.3004 -1.5387 19 1 10.7043 0.2700 -2.3955 20 6 12.2327 -0.9942 -1.5841 21 7 12.6308 -1.6898 -0.5400 22 14 13.2837 -0.9419 -3.1274 23 1 12.6181 -0.0968 -4.1511 24 1 14.6139 -0.3679 -2.8012 25 1 13.4550 -2.3188 -3.6567 26 6 7.0188 0.9916 1.0970 27 1 6.6295 1.2089 0.1023 28 6 7.2301 2.2841 1.8881 29 6 6.0740 0.0285 1.8517 30 6 3.6521 -1.1924 -0.0011 31 1 -0.3633 -0.0002 1.0278 32 1 -0.3634 0.8900 -0.5136 33 1 -0.3633 -0.8899 -0.5139 34 1 1.6074 -2.9521 -0.9587 35 1 0.4046 -2.2852 0.1748 36 1 1.6252 -4.3303 1.0541 37 1 1.7863 -2.8903 2.0894 38 1 8.3784 -1.7054 2.0691 39 1 8.2062 -1.8645 0.2999 40 1 8.3302 0.0250 -1.1425 41 1 9.1811 1.4560 -0.5129 42 1 10.5535 -0.8525 0.3618 43 1 13.4701 -2.1749 -0.5719 44 1 7.9842 2.8948 1.3917 45 1 6.2916 2.8359 1.9400 46 1 7.5651 2.0420 2.8967 47 1 5.0325 0.2564 1.6249 48 1 6.2547 0.0787 2.9255 49 1 4.0367 -0.1873 0.1720 50 1 4.0125 -1.5631 -0.9607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106935144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:55 Heat of formation + Delta-G solvation = -86.586336 kcal Electronic energy + Delta-G solvation = -30948.137478 eV Core-core repulsion = 26783.306122 eV Total energy + Delta-G solvation = -4164.831356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.03828 -39.91063 -38.71734 -37.57473 -35.21894 -34.64840 -33.09810 -32.28841 -31.36690 -30.35016 -29.24249 -28.02852 -26.44587 -25.60065 -24.72165 -23.38180 -22.75542 -21.15121 -19.93142 -19.79352 -19.29008 -17.73177 -17.51271 -17.06613 -16.89284 -16.41551 -16.03361 -15.79723 -15.45978 -15.19738 -14.72102 -14.52859 -14.29531 -14.08330 -13.85367 -13.62283 -13.47204 -13.34120 -13.11905 -12.84295 -12.73814 -12.57905 -12.55100 -12.20044 -12.09380 -11.89737 -11.73403 -11.41131 -11.29620 -11.05693 -10.86051 -10.69468 -10.58554 -10.45915 -10.29082 -10.26776 -9.93756 -9.73949 -9.63042 -9.06229 -8.85212 -8.60369 -6.88962 -5.72689 -3.01519 2.14517 2.27355 2.52883 2.65390 3.46856 3.52306 3.54656 3.58256 4.03633 4.18231 4.29737 4.38887 4.49527 4.52439 4.59004 4.63359 4.68839 4.74599 4.82826 4.90019 4.94719 5.04690 5.10055 5.20537 5.33530 5.35648 5.36713 5.48190 5.50938 5.55600 5.62244 5.74167 5.79027 5.82652 5.99855 6.11037 6.17375 6.20831 6.25681 6.42717 6.47691 6.62610 6.75137 6.84565 6.88977 7.53691 7.67521 7.74404 8.15073 8.45908 9.57275 10.14019 10.48618 11.50233 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.002703 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.667735 B =10354.570546 C =10874.055123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.514 3.486 3 O -0.539 6.539 4 N -0.618 5.618 5 C 0.067 3.933 6 C 0.046 3.954 7 O -0.348 6.348 8 C 0.068 3.932 9 H 0.085 0.915 10 C 0.538 3.462 11 O -0.509 6.509 12 N -0.616 5.616 13 C 0.115 3.885 14 C -0.102 4.102 15 H 0.088 0.912 16 C 0.163 3.837 17 N -0.733 5.733 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.099 4.099 27 H 0.085 0.915 28 C -0.139 4.139 29 C 0.097 3.903 30 C 0.087 3.913 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.019 0.981 41 H 0.023 0.977 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.112 0.888 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.182 2.668 7.610 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.303 3.697 3 O -0.415 6.415 4 N -0.353 5.353 5 C -0.056 4.056 6 C -0.032 4.032 7 O -0.265 6.265 8 C 0.006 3.994 9 H 0.103 0.897 10 C 0.323 3.677 11 O -0.383 6.383 12 N -0.352 5.352 13 C -0.007 4.007 14 C -0.122 4.122 15 H 0.106 0.894 16 C 0.035 3.965 17 N -0.377 5.377 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.119 4.119 27 H 0.104 0.896 28 C -0.197 4.197 29 C -0.026 4.026 30 C -0.036 4.036 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.037 0.963 41 H 0.041 0.959 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.130 0.870 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -28.532 2.415 7.182 29.521 hybrid contribution 0.531 -0.061 -0.509 0.738 sum -28.001 2.354 6.673 28.881 Atomic orbital electron populations 1.21964 0.91334 1.05155 1.04929 1.20891 0.90753 0.82729 0.75317 1.90750 1.70603 1.30744 1.49437 1.48223 1.06476 1.06343 1.74281 1.22609 0.97624 0.84214 1.01128 1.23079 0.81412 1.01504 0.97171 1.88139 1.18260 1.26963 1.93166 1.22212 0.91567 0.86213 0.99392 0.89721 1.19360 0.86498 0.83508 0.78286 1.90777 1.77275 1.24583 1.45669 1.48729 1.08465 1.13797 1.64214 1.22213 0.77519 0.97731 1.03233 1.22403 0.95988 0.93066 1.00707 0.89359 1.20700 0.88274 0.95424 0.92105 1.42377 1.19728 1.58786 1.16805 1.19251 0.99878 1.24962 0.92877 0.91184 1.24739 0.98310 1.00255 0.97658 1.69664 1.23184 1.36134 1.29123 0.86125 0.80347 0.77205 0.82573 1.20579 1.21898 1.21861 1.22214 0.95099 0.94590 0.99979 0.89639 1.21725 1.01839 0.96251 0.99902 1.22734 0.99484 0.81894 0.98515 1.22230 0.80119 1.01909 0.99376 0.88637 0.88580 0.89825 0.89823 0.88058 0.86757 0.92326 0.91530 0.88987 0.96278 0.95942 0.78243 0.93561 0.91651 0.92571 0.92422 0.90417 0.90526 0.87027 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 9.44 36.01 0.34 -0.43 16 2 C 0.51 4.68 7.82 -10.98 -0.09 4.59 16 3 O -0.54 -7.22 16.57 5.56 0.09 -7.13 16 4 N -0.62 -5.30 3.02 -172.24 -0.52 -5.82 16 5 C 0.07 0.36 6.38 -3.52 -0.02 0.34 16 6 C 0.05 0.30 6.99 37.31 0.26 0.56 16 7 O -0.35 -4.18 9.94 -54.91 -0.55 -4.73 16 8 C 0.07 0.81 2.42 -27.71 -0.07 0.74 16 9 H 0.09 0.84 7.91 -51.93 -0.41 0.43 16 10 C 0.54 8.48 7.20 -10.99 -0.08 8.41 16 11 O -0.51 -10.44 16.91 -14.12 -0.24 -10.68 16 12 N -0.62 -8.94 3.29 -169.98 -0.56 -9.50 16 13 C 0.11 1.93 6.29 -2.97 -0.02 1.91 16 14 C -0.10 -1.60 2.65 -89.24 -0.24 -1.84 16 15 H 0.09 1.37 7.85 -51.93 -0.41 0.96 16 16 C 0.16 3.26 5.34 -4.04 -0.02 3.24 16 17 N -0.73 -18.68 5.33 -59.91 -0.32 -19.00 16 18 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 22 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 C -0.10 -1.21 3.18 -88.93 -0.28 -1.49 16 27 H 0.09 1.10 7.86 -51.93 -0.41 0.69 16 28 C -0.14 -1.43 9.17 37.16 0.34 -1.09 16 29 C 0.10 1.07 6.15 -2.32 -0.01 1.05 16 30 C 0.09 0.95 5.72 -3.52 -0.02 0.93 16 31 H 0.10 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.18 6.28 -51.93 -0.33 -0.14 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.21 5.69 -51.93 -0.30 -0.09 16 36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.91 7.54 -51.93 -0.39 1.51 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.38 10.24 7.51 -40.82 -0.31 9.94 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 47 H 0.08 0.76 5.39 -51.93 -0.28 0.48 16 48 H 0.08 0.74 8.02 -51.93 -0.42 0.33 16 49 H 0.11 1.29 5.06 -51.93 -0.26 1.03 16 50 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -37.68 396.18 -8.70 -46.38 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.12 Total: 5.10 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -0.15 Total: 9.49 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.68 Total: -62.32 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.69 Total: -22.54 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.68 -8.70 -46.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106935144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.209 kcal (2) G-P(sol) polarization free energy of solvation -37.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds